pycom15g17000

Nudix hydrolase 20

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
11932106 .. 11934758
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17000.7

Sequence Viewer

Length: 1137 bp
ATGGCCTGCATCAGCGGCGGCAGTCTTCTCGTCGACTCTTTGGTCTCACGTTTCACTGCCAAAGCTTTTCGCGCCTTCCCCAACTCCCTCACGACGTCGCGTCCACTTCGATCCGCCCCCAAAGCTATTCACGAAATCCTCACTTCTCGCAGCGTATCGGTCTCTGCAGCCTCCGATGTCTTCACTTGGGACGACGTCGTCCGAATCTCCAAACCGGAAGCCCTTCAGGACGACCCTTCAGATCTCAAAGGCTACTCTGACAAGATCAAAATCTGCAATCGCAAACTGGAATCTCAATCGGAGTTCATGCCGTTTGTGATTGAGGATCAAATTGTTGGTTACATTCACAATGGTTTTGCTGAGAAGTTACATAGTTTCAAGGACGTGTTTGTTTTCCCTCCAGAAAATTCAAATTCTGATGATGGCGGCGGCTCAATGACTTTGCATTCTTCACTGCGCACGGCGGAGGATAGGACGCGAGCGGTGGGAGATGTAATCAAAAGCTTAGGGGAAGAAGAACTGATTCCAGGTATAAGAAATGAGCTATACCCGGTGGCATCATCCTTTGGGGCACCCATATGTTTCTCTCTAGAACGTGCTGCTGCGCCTTATTTTGGAATAAAGGCTTATGGAGTGCAAATGAATGGCTATGTTGAAAAGGATGGCCAGAAGTTTCTATGGATAGGGAAGAGGAGCCAACAGAAATCCACTTATCCAGGGATGCTTGATCAGCTCGTTGCTGGGGGACTGCCTTACGGGGTTGCATGCGGGGAAAATGTTGTAAAGGAATGTGAAGAGGAAGCTGGAATACCCAGACCCATTTCTAGCGTAGCTGTACCAGTTGGAGCTGTTTCTTATATGGACATTGATGGGTATAGATACAAAAGGGATGTTTTGTTTTGCTATGATTTAAAGCTTCCCGAGAGTTTCATGCCAAAGAATCAAGATGGAGAGGTGGAGAGCTTCAAGTTGATTCCAGTGACGCATGTTGCAAACATCATACGGAGGACGCAATTTTTCAAGCCAAATTGCTCTCTTGTGATCATTGACTTCCTTTTTCGACACGGGTACATTAGGCCCGAATCCTTCGGATACCTGGATCTGCTACAAAGTTTGAGGAGCGGCGATTGTTCTTAA

Protein Analysis

379

Amino Acids

41.84

Weight (kDa)

5.79

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 41, 197
AatII GACGTC 2 cut(s) 98, 198
Acc16I TGCGCA 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 571
AccBSI CCGCTC 2 cut(s) 482, 1122
AccI GTMKAC 1 cut(s) 33
AccII CGCG 3 cut(s) 72, 100, 478
AciI CCGC 9 cut(s) 15, 18, 114, 426, 429, 464, 482, 768, 1122
AclWI GGATC 3 cut(s) 105, 333, 1107
AcoI YGGCCR 1 cut(s) 664
AcsI RAATTY 2 cut(s) 406, 412
AcuI CTGAAG 2 cut(s) 209, 222
AcyI GRCGYC 2 cut(s) 95, 195
AfaI GTAC 2 cut(s) 837, 1070
AfiI CCNNNNNNNGG 1 cut(s) 614
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 5 cut(s) 379, 411, 656, 967, 1021
AhdI GACNNNNNGTC 1 cut(s) 99
AjiI CACGTC 1 cut(s) 385
AjnI CCWGG 3 cut(s) 526, 715, 1095
Alw26I GTCTC 2 cut(s) 49, 166
AlwI GGATC 3 cut(s) 105, 333, 1107
Ama87I CYCGRG 1 cut(s) 920
AoxI GGCC 3 cut(s) 3, 664, 1076
ApeKI GCWGC 4 cut(s) 150, 167, 599, 602
ApoI RAATTY 2 cut(s) 406, 412
Asp700I GAANNNNTTC 2 cut(s) 222, 522
AspLEI GCGC 3 cut(s) 74, 459, 607
AspS9I GGNCC 1 cut(s) 1077
AsuC2I CCSGG 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 920
BaeGI GKGCMC 1 cut(s) 574
BalI TGGCCA 1 cut(s) 666
BanI GGYRCC 1 cut(s) 571
BarI GAAGNNNNNNTAC 2 cut(s) 792, 824
BbsI GAAGAC 2 cut(s) 17, 172
BbvI GCAGC 4 cut(s) 162, 179, 586, 589
BccI CCATC 4 cut(s) 416, 656, 863, 941
BceAI ACGGC 2 cut(s) 295, 477
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 3 cut(s) 528, 717, 1097
BciVI GTATCC 1 cut(s) 1085
BclI TGATCA 2 cut(s) 727, 1041
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 2 cut(s) 49, 166
BfaI CTAG 2 cut(s) 590, 825
BfmI CTRYAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 1085
BglII AGATCT 1 cut(s) 241
BisI GCNGC 9 cut(s) 16, 19, 151, 168, 427, 430, 600, 603, 1123
BlsI GCNGC 9 cut(s) 17, 20, 152, 169, 428, 431, 601, 604, 1124
Bme1390I CCNGG 4 cut(s) 528, 551, 717, 1097
BmeRI GACNNNNNGTC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 920
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 1077
BmiI GGNNCC 2 cut(s) 573, 695
BmrFI CCNGG 4 cut(s) 528, 551, 717, 1097
BmsI GCATC 3 cut(s) 18, 566, 711
BpiI GAAGAC 2 cut(s) 17, 172
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 505
BpuMI CCSGG 1 cut(s) 551
BsaBI GATNNNNATC 1 cut(s) 269
BsaHI GRCGYC 2 cut(s) 95, 195
BsaI GGTCTC 2 cut(s) 49, 166
BsaJI CCNNGG 1 cut(s) 716
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse1I ACTGG 3 cut(s) 291, 839, 977
Bse8I GATNNNNATC 1 cut(s) 269
BseBI CCWGG 3 cut(s) 528, 717, 1097
BseDI CCNNGG 1 cut(s) 716
BseGI GGATG 4 cut(s) 560, 667, 726, 895
BseJI GATNNNNATC 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 3 cut(s) 291, 839, 977
BseRI GAGGAG 2 cut(s) 706, 1132
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 4 cut(s) 162, 179, 586, 589
BseYI CCCAGC 1 cut(s) 740
Bsh1236I CGCG 3 cut(s) 72, 100, 478
BshFI GGCC 3 cut(s) 5, 666, 1078
BshNI GGYRCC 1 cut(s) 571
BsiHKCI CYCGRG 1 cut(s) 920
BsiSI CCGG 2 cut(s) 215, 551
BslFI GGGAC 2 cut(s) 203, 759
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 2 cut(s) 49, 166
BsmFI GGGAC 2 cut(s) 203, 759
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 3 cut(s) 5, 666, 1078
Bso31I GGTCTC 2 cut(s) 49, 166
BsoBI CYCGRG 1 cut(s) 920
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 7 cut(s) 110, 241, 264, 325, 727, 1041, 1099
BspACI CCGC 9 cut(s) 15, 18, 114, 426, 429, 464, 482, 768, 1122
BspANI GGCC 3 cut(s) 5, 666, 1078
BspCNI CTCAG 1 cut(s) 352
BspFNI CGCG 3 cut(s) 72, 100, 478
BspLI GGNNCC 2 cut(s) 573, 695
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 3 cut(s) 105, 333, 1107
BspT107I GGYRCC 1 cut(s) 571
BspTNI GGTCTC 2 cut(s) 49, 166
BsrBI CCGCTC 2 cut(s) 482, 1122
BsrI ACTGG 3 cut(s) 291, 839, 977
BssECI CCNNGG 1 cut(s) 716
BssMI GATC 7 cut(s) 110, 241, 264, 325, 727, 1041, 1099
BssNI GRCGYC 2 cut(s) 95, 195
Bst2UI CCWGG 3 cut(s) 528, 717, 1097
Bst6I CTCTTC 2 cut(s) 683, 789
BstACI GRCGYC 2 cut(s) 95, 195
BstC8I GCNNGC 3 cut(s) 7, 480, 766
BstDEI CTNAG 2 cut(s) 360, 505
BstF5I GGATG 4 cut(s) 560, 667, 726, 895
BstFNI CGCG 3 cut(s) 72, 100, 478
BstHHI GCGC 3 cut(s) 74, 459, 607
BstKTI GATC 7 cut(s) 113, 244, 267, 328, 730, 1044, 1102
BstMAI GTCTC 2 cut(s) 49, 166
BstMBI GATC 7 cut(s) 110, 241, 264, 325, 727, 1041, 1099
BstMWI GCNNNNNNNGC 4 cut(s) 15, 71, 122, 730
BstNI CCWGG 3 cut(s) 528, 717, 1097
BstNSI RCATGY 2 cut(s) 768, 989
BstSCI CCNGG 4 cut(s) 526, 549, 715, 1095
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 574
BstUI CGCG 3 cut(s) 72, 100, 478
BstV1I GCAGC 4 cut(s) 162, 179, 586, 589
BstV2I GAAGAC 2 cut(s) 17, 172
BstX2I RGATCY 2 cut(s) 241, 1099
BstYI RGATCY 2 cut(s) 241, 1099
BsuI GTATCC 1 cut(s) 1085
BsuRI GGCC 3 cut(s) 5, 666, 1078
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 4 cut(s) 560, 667, 726, 895
BtsI GCAGTG 2 cut(s) 54, 452
BtsIMutI CAGTG 3 cut(s) 54, 452, 984
Cac8I GCNNGC 3 cut(s) 7, 480, 766
CfoI GCGC 3 cut(s) 74, 459, 607
Cfr13I GGNCC 1 cut(s) 1077
CseI GACGC 4 cut(s) 89, 484, 991, 1018
Csp6I GTAC 2 cut(s) 836, 1069
CviAII CATG 4 cut(s) 307, 765, 931, 986
CviQI GTAC 2 cut(s) 836, 1069
DdeI CTNAG 2 cut(s) 360, 505
DpnI GATC 7 cut(s) 112, 243, 266, 327, 729, 1043, 1101
DpnII GATC 7 cut(s) 110, 241, 264, 325, 727, 1041, 1099
DraI TTTAAA 1 cut(s) 912
DrdI GACNNNNNNGTC 2 cut(s) 41, 197
DriI GACNNNNNGTC 1 cut(s) 99
DseDI GACNNNNNNGTC 2 cut(s) 41, 197
EaeI YGGCCR 1 cut(s) 664
Eam1104I CTCTTC 2 cut(s) 683, 789
Eam1105I GACNNNNNGTC 1 cut(s) 99
EarI CTCTTC 2 cut(s) 683, 789
EciI GGCGGA 2 cut(s) 103, 479
Eco31I GGTCTC 2 cut(s) 49, 166
Eco57I CTGAAG 2 cut(s) 209, 222
Eco88I CYCGRG 1 cut(s) 920
EcoRII CCWGG 3 cut(s) 526, 715, 1095
FaeI CATG 4 cut(s) 310, 768, 934, 989
FaqI GGGAC 2 cut(s) 203, 759
FatI CATG 4 cut(s) 306, 764, 930, 985
FauI CCCGC 1 cut(s) 761
FauNDI CATATG 1 cut(s) 578
FbaI TGATCA 2 cut(s) 727, 1041
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 9 cut(s) 16, 19, 151, 168, 427, 430, 600, 603, 1123
FokI GGATG 4 cut(s) 547, 674, 733, 902
Fsp4HI GCNGC 9 cut(s) 16, 19, 151, 168, 427, 430, 600, 603, 1123
FspBI CTAG 2 cut(s) 590, 825
FspI TGCGCA 1 cut(s) 458
GlaI GCGC 3 cut(s) 73, 458, 606
GluI GCNGC 9 cut(s) 16, 19, 151, 168, 427, 430, 600, 603, 1123
GsaI CCCAGC 1 cut(s) 744
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 3 cut(s) 5, 666, 1078
HapII CCGG 2 cut(s) 215, 551
HgaI GACGC 4 cut(s) 89, 484, 991, 1018
HhaI GCGC 3 cut(s) 74, 459, 607
Hin1I GRCGYC 2 cut(s) 95, 195
Hin1II CATG 4 cut(s) 310, 768, 934, 989
Hin6I GCGC 3 cut(s) 72, 457, 605
HinP1I GCGC 3 cut(s) 72, 457, 605
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 3 cut(s) 63, 502, 914
HinfI GANTC 7 cut(s) 35, 204, 290, 523, 940, 973, 1082
HpaII CCGG 2 cut(s) 215, 551
Hpy166II GTNNAC 2 cut(s) 34, 104
Hpy188I TCNGA 7 cut(s) 175, 203, 241, 259, 301, 418, 1091
Hpy188III TCNNGA 7 cut(s) 91, 131, 227, 401, 590, 920, 944
Hpy8I GTNNAC 2 cut(s) 34, 104
Hpy99I CGWCG 5 cut(s) 35, 97, 100, 197, 200
HpyAV CCTTC 4 cut(s) 85, 233, 246, 1096
HpyCH4IV ACGT 5 cut(s) 49, 95, 195, 384, 595
HpyCH4V TGCA 7 cut(s) 9, 167, 276, 445, 637, 764, 992
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 71, 122, 730
HpyF3I CTNAG 2 cut(s) 360, 505
HpySE526I ACGT 5 cut(s) 49, 95, 195, 384, 595
Hsp92I GRCGYC 2 cut(s) 95, 195
Hsp92II CATG 4 cut(s) 310, 768, 934, 989
HspAI GCGC 3 cut(s) 72, 457, 605
Ksp22I TGATCA 2 cut(s) 727, 1041
Kzo9I GATC 7 cut(s) 110, 241, 264, 325, 727, 1041, 1099
LmnI GCTCC 3 cut(s) 693, 845, 1119
Lsp1109I GCAGC 4 cut(s) 162, 179, 586, 589
LweI GCATC 3 cut(s) 18, 566, 711
MaeI CTAG 2 cut(s) 590, 825
MaeII ACGT 5 cut(s) 49, 95, 195, 384, 595
MaeIII GTNAC 3 cut(s) 338, 366, 979
MalI GATC 7 cut(s) 112, 243, 266, 327, 729, 1043, 1101
MbiI CCGCTC 2 cut(s) 482, 1122
MboI GATC 7 cut(s) 110, 241, 264, 325, 727, 1041, 1099
MboII GAAGA 7 cut(s) 17, 172, 441, 524, 527, 700, 806
MflI RGATCY 2 cut(s) 241, 1099
MhlI GDGCHC 1 cut(s) 574
MlsI TGGCCA 1 cut(s) 666
MluCI AATT 5 cut(s) 330, 406, 412, 1013, 1027
MluNI TGGCCA 1 cut(s) 666
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 823
Mox20I TGGCCA 1 cut(s) 666
MroXI GAANNNNTTC 2 cut(s) 222, 522
MscI TGGCCA 1 cut(s) 666
MseI TTAA 2 cut(s) 911, 1135
MslI CAYNNNNRTG 1 cut(s) 577
Msp20I TGGCCA 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 2 cut(s) 215, 551
MspR9I CCNGG 4 cut(s) 528, 551, 717, 1097
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 3 cut(s) 528, 717, 1097
MvnI CGCG 3 cut(s) 72, 100, 478
MwoI GCNNNNNNNGC 4 cut(s) 15, 71, 122, 730
NciI CCSGG 1 cut(s) 551
NdeI CATATG 1 cut(s) 578
NdeII GATC 7 cut(s) 110, 241, 264, 325, 727, 1041, 1099
NlaIII CATG 4 cut(s) 310, 768, 934, 989
NlaIV GGNNCC 2 cut(s) 573, 695
NmuCI GTSAC 1 cut(s) 979
NsbI TGCGCA 1 cut(s) 458
NspI RCATGY 2 cut(s) 768, 989
PaeI GCATGC 1 cut(s) 768
PctI GAATGC 1 cut(s) 445
PdmI GAANNNNTTC 2 cut(s) 222, 522
PfeI GAWTC 6 cut(s) 204, 290, 523, 940, 973, 1082
PflFI GACNNNGTC 2 cut(s) 194, 197
PkrI GCNGC 9 cut(s) 17, 20, 152, 169, 428, 431, 601, 604, 1124
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 3 cut(s) 526, 715, 1095
PspFI CCCAGC 1 cut(s) 740
PspGI CCWGG 3 cut(s) 526, 715, 1095
PspN4I GGNNCC 2 cut(s) 573, 695
PspPI GGNCC 1 cut(s) 1077
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 2 cut(s) 241, 1099
PsyI GACNNNGTC 2 cut(s) 194, 197
RsaI GTAC 2 cut(s) 837, 1070
RsaNI GTAC 2 cut(s) 836, 1069
RseI CAYNNNNRTG 1 cut(s) 577
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 911, 1135
SatI GCNGC 9 cut(s) 16, 19, 151, 168, 427, 430, 600, 603, 1123
Sau3AI GATC 7 cut(s) 110, 241, 264, 325, 727, 1041, 1099
Sau96I GGNCC 1 cut(s) 1077
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 4 cut(s) 528, 551, 717, 1097
SduI GDGCHC 1 cut(s) 574
SfaNI GCATC 3 cut(s) 18, 566, 711
SfcI CTRYAG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 577
SphI GCATGC 1 cut(s) 768
Sse9I AATT 5 cut(s) 330, 406, 412, 1013, 1027
SsiI CCGC 9 cut(s) 15, 18, 114, 426, 429, 464, 482, 768, 1122
SspMI CTAG 2 cut(s) 590, 825
StyD4I CCNGG 4 cut(s) 526, 549, 715, 1095
TaiI ACGT 5 cut(s) 52, 98, 198, 387, 598
TaqI TCGA 3 cut(s) 33, 109, 1060
TaqII GACCGA 1 cut(s) 148
TasI AATT 5 cut(s) 330, 406, 412, 1013, 1027
TauI GCSGC 5 cut(s) 18, 21, 429, 432, 1125
TfiI GAWTC 6 cut(s) 204, 290, 523, 940, 973, 1082
Tru1I TTAA 2 cut(s) 911, 1135
Tru9I TTAA 2 cut(s) 911, 1135
TscAI CASTG 3 cut(s) 61, 459, 984
TseFI GTSAC 1 cut(s) 979
TseI GCWGC 4 cut(s) 150, 167, 599, 602
Tsp45I GTSAC 1 cut(s) 979
TspDTI ATGAA 3 cut(s) 295, 656, 919
TspGWI ACGGA 1 cut(s) 1018
TspRI CASTG 3 cut(s) 61, 459, 984
Tth111I GACNNNGTC 2 cut(s) 194, 197
XapI RAATTY 2 cut(s) 406, 412
XbaI TCTAGA 1 cut(s) 589
XceI RCATGY 2 cut(s) 768, 989
XmiI GTMKAC 1 cut(s) 33
XmnI GAANNNNTTC 2 cut(s) 222, 522
XspI CTAG 2 cut(s) 590, 825
ZraI GACGTC 2 cut(s) 96, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.