Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Reverse (-)

4419843 .. 4422479

Gene Structure 2637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016170

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCCTTCGTCCACTCCTTCTCCTTCTCCTTCTCCTTCCCTATCACCGCCAAACCTTTTCGCGCCTTCCCGAACCCCCAAACGCCGTCGTTTCCCTCACGCTCCACCCTCCCTTTTCACAACCTCCTCACTCGCCGCCACTCCGATGTCTTCTTCACCTGGGACGACGTCGTCCGGATATCCCAACCGGATGCCCTCCCCGACGACGACCCTTCCGATCTCAAATGCTACTCCGATAAGATCAAATTCTGCAACCGCGGCCACGAAATGCAATCGGAGTTCCGTTCCTTCGTAATTGAGGACCAAATCGTTGGGTACATTCACAACGGATTTGCCGAGAATTTACGGAGTTACCAGGACGTTTTTACTTTTCCACCAGGCCAAGTAACCCTGCATTCTTCGCTGAGCTCACCTGAGGATAGGACTAGAGCTGTTGGGGATGTGGTTAAGAGCTTAGGGGAAGAATTGATTCCAGGTATAAGAAATGAGTTTTACCCGGTGACGTCGGCTTTTGGGGCTCCAATATATTTCTCTCTTGAACGTGCAGCCGCTCCTTACTTTGGAATAAAGGTTTATGGAGTGCATATGTGTGGCTATGTTGAGAAAGATGGGAAGGAATTTCTATGGATAGGGAAGAGAAGTCAACAGAAACAGACCTATCCAGGGATGCTTGATCATCTTGTTGCTGGTGGACTGCCTCATGGGGTAGCTTGTGGGGACAATGTTGTGAAGGAATGTGAAGAGGAAGCCGGAATACCAAGCTCCATTTCCAAGGGTGCTGTACCAGTTGGTGCTGTTTCATATATGGACATTGATGGGTATAGTTACAAAAGGGATGTCTTGTTTTGCTATGATTTAAAACTCCCTGAGAGCTTCATGCCTACGAATCAAGATGGAGAGGTGGAGAGTTTCAAGTTGATCCCTGTGACGCATGTTGCGAACATCATCCGGAGGACACCATTTTTCAAGCCAAATTGTTCACTTGTCATCATTGATTTCCTGTTTCGACATGGGTACATTAGTCCCGAATGCTTCGGATACCTGGATCTATTACAAAGTTTGAGAAGCGGTAGTTGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

361

Amino Acids

40.43

Weight (kDa)

5.78

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4743	PF15916	79 - 190	2.7e-34	Domain of unknown function (DUF4743)
NUDIX	PF00293	200 - 312	2.4e-06	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	2 cut(s)	171, 506
AccBSI	CCGCTC	1 cut(s)	551
AccII	CGCG	2 cut(s)	63, 258
AccIII	TCCGGA	2 cut(s)	174, 948
AciI	CCGC	6 cut(s)	48, 136, 256, 258, 549, 1068
AclWI	GGATC	2 cut(s)	913, 1053
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	3 cut(s)	245, 340, 617
AcyI	GRCGYC	2 cut(s)	168, 503
AfaI	GTAC	3 cut(s)	317, 783, 1016
AfiI	CCNNNNNNNGG	2 cut(s)	560, 663
AgsI	TTSAA	3 cut(s)	539, 913, 967
AjnI	CCWGG	6 cut(s)	158, 354, 376, 472, 661, 1041
AjuI	GAANNNNNNNTTGG	2 cut(s)	751, 783
AluBI	AGCT	6 cut(s)	408, 431, 453, 710, 762, 873
AluI	AGCT	6 cut(s)	408, 431, 453, 710, 762, 873
Alw21I	GWGCWC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	913, 1053
Aor13HI	TCCGGA	2 cut(s)	174, 948
AoxI	GGCC	3 cut(s)	3, 259, 379
ApeKI	GCWGC	1 cut(s)	545
ApoI	RAATTY	3 cut(s)	245, 340, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	822, 854
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	4 cut(s)	37, 148, 402, 511
AvaII	GGWCC	1 cut(s)	301
AxyI	CCTNAGG	1 cut(s)	414
BaeI	ACNNNNGTAYC	2 cut(s)	1006, 1039
BanII	GRGCYC	2 cut(s)	410, 520
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	557
BccI	CCATC	3 cut(s)	602, 809, 887
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	6 cut(s)	160, 356, 378, 474, 663, 1043
BciVI	GTATCC	1 cut(s)	1031
BclI	TGATCA	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	497
BfaI	CTAG	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	1031
BisI	GCNGC	4 cut(s)	136, 259, 546, 549
BlpI	GCTNAGC	1 cut(s)	404
BlsI	GCNGC	4 cut(s)	137, 260, 547, 550
Bme1390I	CCNGG	7 cut(s)	160, 356, 378, 474, 497, 663, 1043
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	7 cut(s)	160, 356, 378, 474, 497, 663, 1043
BmsI	GCATC	2 cut(s)	181, 657
BpiI	GAAGAC	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	454
Bpu1102I	GCTNAGC	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	497
BsaHI	GRCGYC	2 cut(s)	168, 503
BsaJI	CCNNGG	4 cut(s)	159, 256, 662, 771
BsaWI	WCCGGW	3 cut(s)	174, 187, 948
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	560, 663
Bse1I	ACTGG	1 cut(s)	785
Bse21I	CCTNAGG	1 cut(s)	414
BseAI	TCCGGA	2 cut(s)	174, 948
BseBI	CCWGG	6 cut(s)	160, 356, 378, 474, 663, 1043
BseDI	CCNNGG	4 cut(s)	159, 256, 662, 771
BseGI	GGATG	5 cut(s)	196, 445, 672, 841, 945
BseLI	CCNNNNNNNGG	2 cut(s)	560, 663
BseMII	CTCAG	3 cut(s)	395, 405, 858
BseNI	ACTGG	1 cut(s)	785
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	557
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	2 cut(s)	63, 258
BshFI	GGCC	3 cut(s)	5, 261, 381
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	5 cut(s)	175, 188, 497, 750, 949
BslFI	GGGAC	3 cut(s)	176, 731, 1008
BslI	CCNNNNNNNGG	2 cut(s)	560, 663
BsmFI	GGGAC	3 cut(s)	176, 731, 1008
BsmI	GAATGC	2 cut(s)	394, 1034
BsnI	GGCC	3 cut(s)	5, 261, 381
Bsp1286I	GDGCHC	2 cut(s)	410, 520
Bsp13I	TCCGGA	2 cut(s)	174, 948
Bsp143I	GATC	5 cut(s)	217, 240, 673, 918, 1045
Bsp1720I	GCTNAGC	1 cut(s)	404
BspACI	CCGC	6 cut(s)	48, 136, 256, 258, 549, 1068
BspANI	GGCC	3 cut(s)	5, 261, 381
BspCNI	CTCAG	3 cut(s)	396, 406, 859
BspEI	TCCGGA	2 cut(s)	174, 948
BspFNI	CGCG	2 cut(s)	63, 258
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	2 cut(s)	913, 1053
BsrBI	CCGCTC	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	4 cut(s)	159, 256, 662, 771
BssMI	GATC	5 cut(s)	217, 240, 673, 918, 1045
BssNI	GRCGYC	2 cut(s)	168, 503
BssT1I	CCWWGG	1 cut(s)	771
Bst2UI	CCWGG	6 cut(s)	160, 356, 378, 474, 663, 1043
Bst6I	CTCTTC	2 cut(s)	629, 735
BstACI	GRCGYC	2 cut(s)	168, 503
BstDEI	CTNAG	4 cut(s)	404, 414, 454, 867
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	5 cut(s)	196, 445, 672, 841, 945
BstFNI	CGCG	2 cut(s)	63, 258
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	5 cut(s)	220, 243, 676, 921, 1048
BstMBI	GATC	5 cut(s)	217, 240, 673, 918, 1045
BstMWI	GCNNNNNNNGC	3 cut(s)	258, 400, 515
BstNI	CCWGG	6 cut(s)	160, 356, 378, 474, 663, 1043
BstNSI	RCATGY	1 cut(s)	935
BstSCI	CCNGG	7 cut(s)	158, 354, 376, 472, 495, 661, 1041
BstUI	CGCG	2 cut(s)	63, 258
BstV1I	GCAGC	1 cut(s)	557
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	1045
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	1045
Bsu36I	CCTNAGG	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	1031
BsuRI	GGCC	3 cut(s)	5, 261, 381
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	5 cut(s)	196, 445, 672, 841, 945
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	301
Cfr42I	CCGCGG	1 cut(s)	259
CseI	GACGC	1 cut(s)	937
Csp6I	GTAC	3 cut(s)	316, 782, 1015
CviAII	CATG	4 cut(s)	701, 877, 932, 1010
CviQI	GTAC	3 cut(s)	316, 782, 1015
DdeI	CTNAG	4 cut(s)	404, 414, 454, 867
DpnI	GATC	5 cut(s)	219, 242, 675, 920, 1047
DpnII	GATC	5 cut(s)	217, 240, 673, 918, 1045
DraI	TTTAAA	1 cut(s)	858
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	629, 735
EarI	CTCTTC	2 cut(s)	629, 735
Ecl136II	GAGCTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	771
Eco24I	GRGCYC	2 cut(s)	410, 520
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	408
EcoRII	CCWGG	6 cut(s)	158, 354, 376, 472, 661, 1041
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	771
EcoT38I	GRGCYC	2 cut(s)	410, 520
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	4 cut(s)	704, 880, 935, 1013
FaqI	GGGAC	3 cut(s)	176, 731, 1008
FatI	CATG	4 cut(s)	700, 876, 931, 1009
FauNDI	CATATG	1 cut(s)	585
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	4 cut(s)	136, 259, 546, 549
FokI	GGATG	5 cut(s)	203, 452, 679, 848, 932
FriOI	GRGCYC	2 cut(s)	410, 520
Fsp4HI	GCNGC	4 cut(s)	136, 259, 546, 549
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	4 cut(s)	136, 259, 546, 549
HaeIII	GGCC	3 cut(s)	5, 261, 381
HapII	CCGG	5 cut(s)	175, 188, 497, 750, 949
HgaI	GACGC	1 cut(s)	937
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	2 cut(s)	168, 503
Hin1II	CATG	4 cut(s)	704, 880, 935, 1013
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	644
HindII	GTYRAC	1 cut(s)	644
HinfI	GANTC	2 cut(s)	469, 886
HpaII	CCGG	5 cut(s)	175, 188, 497, 750, 949
HphI	GGTGA	4 cut(s)	37, 148, 402, 511
Hpy166II	GTNNAC	4 cut(s)	13, 644, 692, 980
Hpy188I	TCNGA	5 cut(s)	145, 217, 235, 277, 1037
Hpy188III	TCNNGA	6 cut(s)	70, 175, 536, 890, 949, 1025
Hpy8I	GTNNAC	4 cut(s)	13, 644, 692, 980
Hpy99I	CGWCG	6 cut(s)	91, 170, 173, 206, 209, 508
HpyCH4IV	ACGT	4 cut(s)	168, 360, 503, 541
HpyCH4V	TGCA	5 cut(s)	252, 271, 394, 545, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	258, 400, 515
HpyF3I	CTNAG	4 cut(s)	404, 414, 454, 867
HpySE526I	ACGT	4 cut(s)	168, 360, 503, 541
Hsp92I	GRCGYC	2 cut(s)	168, 503
Hsp92II	CATG	4 cut(s)	704, 880, 935, 1013
HspAI	GCGC	1 cut(s)	63
Kpn2I	TCCGGA	2 cut(s)	174, 948
Ksp22I	TGATCA	1 cut(s)	673
KspI	CCGCGG	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	217, 240, 673, 918, 1045
LmnI	GCTCC	4 cut(s)	107, 523, 556, 767
Lsp1109I	GCAGC	1 cut(s)	557
LweI	GCATC	2 cut(s)	181, 657
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	4 cut(s)	168, 360, 503, 541
MaeIII	GTNAC	5 cut(s)	350, 385, 499, 824, 925
MalI	GATC	5 cut(s)	219, 242, 675, 920, 1047
MbiI	CCGCTC	1 cut(s)	551
MboI	GATC	5 cut(s)	217, 240, 673, 918, 1045
MboII	GAAGA	6 cut(s)	142, 145, 390, 473, 646, 752
MflI	RGATCY	1 cut(s)	1045
MhlI	GDGCHC	2 cut(s)	410, 520
MluCI	AATT	6 cut(s)	245, 294, 340, 464, 617, 973
MroI	TCCGGA	2 cut(s)	174, 948
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	2 cut(s)	447, 857
MslI	CAYNNNNRTG	2 cut(s)	144, 588
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	5 cut(s)	175, 188, 497, 750, 949
MspR9I	CCNGG	7 cut(s)	160, 356, 378, 474, 497, 663, 1043
Mva1269I	GAATGC	2 cut(s)	394, 1034
MvaI	CCWGG	6 cut(s)	160, 356, 378, 474, 663, 1043
MvnI	CGCG	2 cut(s)	63, 258
MwoI	GCNNNNNNNGC	3 cut(s)	258, 400, 515
NciI	CCSGG	1 cut(s)	497
NdeI	CATATG	1 cut(s)	585
NdeII	GATC	5 cut(s)	217, 240, 673, 918, 1045
NlaIII	CATG	4 cut(s)	704, 880, 935, 1013
NlaIV	GGNNCC	1 cut(s)	519
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	2 cut(s)	499, 925
NspI	RCATGY	1 cut(s)	935
PcsI	WCGNNNNNNNCGW	3 cut(s)	213, 333, 935
PctI	GAATGC	2 cut(s)	394, 1034
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	469, 886
PflFI	GACNNNGTC	2 cut(s)	167, 170
PkrI	GCNGC	4 cut(s)	137, 260, 547, 550
Psp124BI	GAGCTC	1 cut(s)	410
Psp6I	CCWGG	6 cut(s)	158, 354, 376, 472, 661, 1041
PspGI	CCWGG	6 cut(s)	158, 354, 376, 472, 661, 1041
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	1045
PsyI	GACNNNGTC	2 cut(s)	167, 170
RsaI	GTAC	3 cut(s)	317, 783, 1016
RsaNI	GTAC	3 cut(s)	316, 782, 1015
RseI	CAYNNNNRTG	2 cut(s)	144, 588
SacI	GAGCTC	1 cut(s)	410
SacII	CCGCGG	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	447, 857
SatI	GCNGC	4 cut(s)	136, 259, 546, 549
Sau3AI	GATC	5 cut(s)	217, 240, 673, 918, 1045
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	7 cut(s)	160, 356, 378, 474, 497, 663, 1043
SduI	GDGCHC	2 cut(s)	410, 520
SfaNI	GCATC	2 cut(s)	181, 657
Sfr303I	CCGCGG	1 cut(s)	259
SgrBI	CCGCGG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	2 cut(s)	144, 588
Sse9I	AATT	6 cut(s)	245, 294, 340, 464, 617, 973
SsiI	CCGC	6 cut(s)	48, 136, 256, 258, 549, 1068
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	410
StyD4I	CCNGG	7 cut(s)	158, 354, 376, 472, 495, 661, 1041
StyI	CCWWGG	1 cut(s)	771
TaiI	ACGT	4 cut(s)	171, 363, 506, 544
TaqI	TCGA	1 cut(s)	1006
TasI	AATT	6 cut(s)	245, 294, 340, 464, 617, 973
TauI	GCSGC	3 cut(s)	138, 261, 551
TfiI	GAWTC	2 cut(s)	469, 886
Tru1I	TTAA	2 cut(s)	447, 857
Tru9I	TTAA	2 cut(s)	447, 857
TseFI	GTSAC	2 cut(s)	499, 925
TseI	GCWGC	1 cut(s)	545
Tsp45I	GTSAC	2 cut(s)	499, 925
TspDTI	ATGAA	2 cut(s)	789, 865
TspGWI	ACGGA	3 cut(s)	272, 342, 361
Tth111I	GACNNNGTC	2 cut(s)	167, 170
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	3 cut(s)	245, 340, 617
XceI	RCATGY	1 cut(s)	935
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	1 cut(s)	426
ZraI	GACGTC	2 cut(s)	169, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.