Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Forward (+)

11947174 .. 11947911

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCGTATCGGTCTCTGCAGCCTTCGATGTCTTCACTTGGGACGAGGTCGTCCGAATCTCCAAACCGGATGCCCTTCAGATCTCAAATGCTACTCCGACAAGATCAAAATCTGTAATCGCAGGCTGGAATCTCAATCGGAGTTCATGCCGTTTGTGATTGAGGATCAAATTGTTGGTTACATTCATCATGATTTTGCTGAGAATTTACGTAGTTTCAAGGAGGTGTTTGTTTTCCTGCCAGAAAGTGCAAATTCTCACGGTGGCGCCGGCTCAATGACCCTGCATTCTTCACTGCGCACGGCAGAGGATAGGATGCGAGCAGTGGGAGATGTAATCAAAAGCTTAGGGGAAGAAGAACTGATTCCAGGTATAAGAAATGAGGTAATGATTTTGCTTGAAAAGACTGAAATGTGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

140

Amino Acids

15.68

Weight (kDa)

6.2

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	418
AasI	GACNNNNNNGTC	1 cut(s)	48
Acc16I	TGCGCA	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	2 cut(s)	202, 250
AcuI	CTGAAG	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	217, 398
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	1 cut(s)	342
AluI	AGCT	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	2 cut(s)	202, 250
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	2 cut(s)	266, 297
BanI	GGYRCC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	30
BceAI	ACGGC	2 cut(s)	133, 315
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	16
BfoI	RGCGCY	1 cut(s)	267
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	59, 303
BpiI	GAAGAC	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	343
BsaAI	YACGTR	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	74, 318
BseJI	GATNNNNATC	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	66, 267
BslFI	GGGAC	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	17
Bsp143I	GATC	3 cut(s)	79, 102, 163
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	20
BspPI	GGATC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssMI	GATC	3 cut(s)	79, 102, 163
BssNI	GRCGYC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	122, 268, 318
BstDEI	CTNAG	2 cut(s)	198, 343
BstF5I	GGATG	2 cut(s)	74, 318
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	2 cut(s)	266, 297
BstKTI	GATC	3 cut(s)	82, 105, 166
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	3 cut(s)	79, 102, 163
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	16
BstSNI	TACGTA	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	74, 318
BtsI	GCAGTG	2 cut(s)	290, 327
BtsIMutI	CAGTG	2 cut(s)	290, 327
Cac8I	GCNNGC	3 cut(s)	122, 268, 318
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	2 cut(s)	266, 297
Cfr10I	RCCGGY	1 cut(s)	266
CviAII	CATG	2 cut(s)	145, 188
CviJI	RGCY	4 cut(s)	21, 124, 270, 342
CviKI_1	RGCY	4 cut(s)	21, 124, 270, 342
DdeI	CTNAG	2 cut(s)	198, 343
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	3 cut(s)	81, 104, 165
DpnII	GATC	3 cut(s)	79, 102, 163
DrdI	GACNNNNNNGTC	1 cut(s)	48
DseDI	GACNNNNNNGTC	1 cut(s)	48
Eco105I	TACGTA	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	364
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
FaeI	CATG	2 cut(s)	148, 191
FaiI	YATR	4 cut(s)	146, 189, 371, 418
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	2 cut(s)	144, 187
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	2 cut(s)	81, 325
Fsp4HI	GCNGC	1 cut(s)	19
FspI	TGCGCA	1 cut(s)	296
GlaI	GCGC	2 cut(s)	265, 296
GluI	GCNGC	1 cut(s)	19
HaeII	RGCGCY	1 cut(s)	267
HapII	CCGG	2 cut(s)	66, 267
HhaI	GCGC	2 cut(s)	266, 297
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	148, 191
Hin6I	GCGC	2 cut(s)	264, 295
HinP1I	GCGC	2 cut(s)	264, 295
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	3 cut(s)	55, 128, 361
HpaII	CCGG	2 cut(s)	66, 267
Hpy188I	TCNGA	4 cut(s)	54, 79, 97, 139
Hpy188III	TCNNGA	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	32, 84
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	3 cut(s)	18, 248, 283
HpyF3I	CTNAG	2 cut(s)	198, 343
HpySE526I	ACGT	1 cut(s)	208
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	148, 191
HspAI	GCGC	2 cut(s)	264, 295
KasI	GGCGCC	1 cut(s)	263
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	79, 102, 163
LpnPI	CCDG	9 cut(s)	79, 106, 110, 248, 252, 280, 293, 351, 378
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	2 cut(s)	59, 303
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	3 cut(s)	81, 104, 165
MboI	GATC	3 cut(s)	79, 102, 163
MboII	GAAGA	4 cut(s)	23, 279, 362, 365
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	3 cut(s)	168, 202, 250
Mly113I	GGCGCC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	38, 154, 214, 298, 373
MroNI	GCCGGC	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	360
MspI	CCGG	2 cut(s)	66, 267
MspR9I	CCNGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	366
NaeI	GCCGGC	1 cut(s)	268
NarI	GGCGCC	1 cut(s)	264
NdeII	GATC	3 cut(s)	79, 102, 163
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	148, 191
NlaIV	GGNNCC	1 cut(s)	265
NsbI	TGCGCA	1 cut(s)	296
PagI	TCATGA	1 cut(s)	187
PctI	GAATGC	1 cut(s)	283
PdiI	GCCGGC	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	55, 128, 361
PflFI	GACNNNGTC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	20
PluTI	GGCGCC	1 cut(s)	267
Ppu21I	YACGTR	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	45
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	3 cut(s)	79, 102, 163
ScrFI	CCNGG	1 cut(s)	366
SetI	ASST	6 cut(s)	49, 211, 225, 344, 370, 384
SfaNI	GCATC	2 cut(s)	59, 303
SfcI	CTRYAG	1 cut(s)	16
SfoI	GGCGCC	1 cut(s)	265
SnaBI	TACGTA	1 cut(s)	209
Sse9I	AATT	3 cut(s)	168, 202, 250
SspDI	GGCGCC	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	25
TasI	AATT	3 cut(s)	168, 202, 250
TfiI	GAWTC	3 cut(s)	55, 128, 361
TscAI	CASTG	2 cut(s)	297, 327
TseI	GCWGC	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	133, 173
TspRI	CASTG	2 cut(s)	297, 327
Tth111I	GACNNNGTC	1 cut(s)	45
XapI	RAATTY	2 cut(s)	202, 250
XmnI	GAANNNNTTC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.