Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Reverse (-)

4702708 .. 4705325

Gene Structure 2618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG058100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCCTTCGTCCACTCCTTCACCTTCCCCATCACCGCCAAACCTTTTCGCGCCTTCCCCAACCCCCGAACGCCGTCGTTTCCCACACGCTCCACCCTCCCTTTTCACAACCTCCTCACTCGCCGCCACTCCGATGTCTTCTTCACCTGGGACGACGTCGTCCGGATATCCCAACCGGAATCCCACCCCGACGACGACCCTTCCGATCTCAAATGCTACTCCGACAAGATCAAATTCTGCAACCGCGGCCACGAAATGCAATCGGAGTTCCGTTCCTTCGTAATTGAGGACCAAATCGTTGGGTACATTCACAACGGAGTTGCCGAGAATTTACGGAGTTACCAGGACGTTTTTACTTTTCCACCAGGCCAGGTAACCCTGCATTCTTCGCTGAGCTCACCCGAGGATAGGACAAGAGCTGTGGGGGATGTGGTTAAGAGCTTAGGGGAAGAATTGATTCCAGGTATAAGAAATGAGTTTTACCCGGTGAGGTCGGCTTTTGGGGCTCCAATATATTTCTCTCTTGAACGTGCAGCCGCTCCTTACTTTGGAATAAAGGTTTATGGAGTGCATATGTGTGGCTATGTTGAGAAAGATGGGAAGGAATTTCTATGGATAGGGAAGAGAAGTCAACAGAAACAGACCTATCCAGGGATGCTTGATCATCTTGTTGCTGGTGGCCTGCCTCATGGGGTAGCTTGTGGGGACAATGTTGTGAAGGAATGTGAAGAGGAAGCCGGAATACCAAGCTCCATTTCCAAGGGTGCTGTACCAGTTGGTGCTGTTTCGTATATGGACATTGATGGGTATAGTTACAAAAGGGATGTCTTGTTTTGCTATGATTTAAAACTCCCTGAGAGCTTCATGCCTACGAATCAAGATGGAGAGGTGGAGAGTTTCAAGTTGATCCCTGTGACGCATGTTGCAAACATCATCCGGAGGACACCATTTTTCAAGCCAAATTGTTCACTTGTCATCATTGATTTCCTGTTTCGACATGGGTACATTAGTCCCGAATGCTTCGGATACCTGGATCTATTACAAAGTTTGAGAAGCGGTAGTTGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

356

Amino Acids

40.08

Weight (kDa)

6.06

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4743	PF15916	75 - 186	2.2e-34	Domain of unknown function (DUF4743)
NUDIX	PF00293	196 - 308	2.4e-06	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AatII	GACGTC	1 cut(s)	159
AccBSI	CCGCTC	1 cut(s)	539
AccII	CGCG	2 cut(s)	51, 246
AccIII	TCCGGA	2 cut(s)	162, 936
AciI	CCGC	6 cut(s)	36, 124, 244, 246, 537, 1056
AclWI	GGATC	2 cut(s)	901, 1041
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	3 cut(s)	233, 328, 605
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	3 cut(s)	305, 771, 1004
AfiI	CCNNNNNNNGG	3 cut(s)	408, 548, 651
AgsI	TTSAA	3 cut(s)	527, 901, 955
AjnI	CCWGG	7 cut(s)	146, 342, 364, 369, 460, 649, 1029
AjuI	GAANNNNNNNTTGG	2 cut(s)	739, 771
AluBI	AGCT	6 cut(s)	396, 419, 441, 698, 750, 861
AluI	AGCT	6 cut(s)	396, 419, 441, 698, 750, 861
Alw21I	GWGCWC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	901, 1041
Ama87I	CYCGRG	1 cut(s)	401
Aor13HI	TCCGGA	2 cut(s)	162, 936
AoxI	GGCC	4 cut(s)	3, 247, 367, 679
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	3 cut(s)	233, 328, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	810, 842
Asp700I	GAANNNNTTC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	5 cut(s)	13, 25, 136, 390, 499
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	289
BaeI	ACNNNNGTAYC	2 cut(s)	994, 1027
BanII	GRGCYC	2 cut(s)	398, 508
BarI	GAAGNNNNNNTAC	2 cut(s)	726, 758
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	4 cut(s)	38, 590, 797, 875
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	7 cut(s)	148, 344, 366, 371, 462, 651, 1031
BciVI	GTATCC	1 cut(s)	1019
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	1019
BisI	GCNGC	4 cut(s)	124, 247, 534, 537
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	4 cut(s)	125, 248, 535, 538
Bme1390I	CCNGG	8 cut(s)	148, 344, 366, 371, 462, 485, 651, 1031
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	8 cut(s)	148, 344, 366, 371, 462, 485, 651, 1031
BmsI	GCATC	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	442
Bpu1102I	GCTNAGC	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	5 cut(s)	147, 244, 402, 650, 759
BsaWI	WCCGGW	3 cut(s)	162, 175, 936
Bsc4I	CCNNNNNNNGG	3 cut(s)	408, 548, 651
Bse1I	ACTGG	1 cut(s)	773
BseAI	TCCGGA	2 cut(s)	162, 936
BseBI	CCWGG	7 cut(s)	148, 344, 366, 371, 462, 651, 1031
BseDI	CCNNGG	5 cut(s)	147, 244, 402, 650, 759
BseGI	GGATG	4 cut(s)	433, 660, 829, 933
BseLI	CCNNNNNNNGG	3 cut(s)	408, 548, 651
BseMII	CTCAG	2 cut(s)	383, 846
BseNI	ACTGG	1 cut(s)	773
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	2 cut(s)	51, 246
BshFI	GGCC	4 cut(s)	5, 249, 369, 681
BsiHKAI	GWGCWC	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	5 cut(s)	163, 176, 485, 738, 937
BslFI	GGGAC	3 cut(s)	164, 719, 996
BslI	CCNNNNNNNGG	3 cut(s)	408, 548, 651
BsmFI	GGGAC	3 cut(s)	164, 719, 996
BsmI	GAATGC	2 cut(s)	382, 1022
BsnI	GGCC	4 cut(s)	5, 249, 369, 681
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	398, 508
Bsp13I	TCCGGA	2 cut(s)	162, 936
Bsp143I	GATC	5 cut(s)	205, 228, 661, 906, 1033
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	6 cut(s)	36, 124, 244, 246, 537, 1056
BspANI	GGCC	4 cut(s)	5, 249, 369, 681
BspCNI	CTCAG	2 cut(s)	384, 847
BspEI	TCCGGA	2 cut(s)	162, 936
BspFNI	CGCG	2 cut(s)	51, 246
BspLI	GGNNCC	1 cut(s)	507
BspPI	GGATC	2 cut(s)	901, 1041
BsrBI	CCGCTC	1 cut(s)	539
BsrI	ACTGG	1 cut(s)	773
BssECI	CCNNGG	5 cut(s)	147, 244, 402, 650, 759
BssMI	GATC	5 cut(s)	205, 228, 661, 906, 1033
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	7 cut(s)	148, 344, 366, 371, 462, 651, 1031
Bst6I	CTCTTC	2 cut(s)	617, 723
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	3 cut(s)	392, 442, 855
BstDSI	CCRYGG	1 cut(s)	244
BstEII	GGTNACC	1 cut(s)	373
BstF5I	GGATG	4 cut(s)	433, 660, 829, 933
BstFNI	CGCG	2 cut(s)	51, 246
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	5 cut(s)	208, 231, 664, 909, 1036
BstMBI	GATC	5 cut(s)	205, 228, 661, 906, 1033
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 388, 503
BstNI	CCWGG	7 cut(s)	148, 344, 366, 371, 462, 651, 1031
BstNSI	RCATGY	1 cut(s)	923
BstPI	GGTNACC	1 cut(s)	373
BstSCI	CCNGG	8 cut(s)	146, 342, 364, 369, 460, 483, 649, 1029
BstUI	CGCG	2 cut(s)	51, 246
BstV1I	GCAGC	1 cut(s)	545
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	1033
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	1033
BsuI	GTATCC	1 cut(s)	1019
BsuRI	GGCC	4 cut(s)	5, 249, 369, 681
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	4 cut(s)	433, 660, 829, 933
Cac8I	GCNNGC	1 cut(s)	683
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	289
Cfr42I	CCGCGG	1 cut(s)	247
CseI	GACGC	1 cut(s)	925
Csp6I	GTAC	3 cut(s)	304, 770, 1003
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	4 cut(s)	689, 865, 920, 998
CviQI	GTAC	3 cut(s)	304, 770, 1003
DdeI	CTNAG	3 cut(s)	392, 442, 855
DpnI	GATC	5 cut(s)	207, 230, 663, 908, 1035
DpnII	GATC	5 cut(s)	205, 228, 661, 906, 1033
DraI	TTTAAA	1 cut(s)	846
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	617, 723
EarI	CTCTTC	2 cut(s)	617, 723
Ecl136II	GAGCTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	759
Eco24I	GRGCYC	2 cut(s)	398, 508
Eco32I	GATATC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	401
Eco91I	GGTNACC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	396
EcoO65I	GGTNACC	1 cut(s)	373
EcoRII	CCWGG	7 cut(s)	146, 342, 364, 369, 460, 649, 1029
EcoRV	GATATC	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	759
EcoT38I	GRGCYC	2 cut(s)	398, 508
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	4 cut(s)	692, 868, 923, 1001
FaqI	GGGAC	3 cut(s)	164, 719, 996
FatI	CATG	4 cut(s)	688, 864, 919, 997
FauNDI	CATATG	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	661
Fnu4HI	GCNGC	4 cut(s)	124, 247, 534, 537
FokI	GGATG	4 cut(s)	440, 667, 836, 920
FriOI	GRGCYC	2 cut(s)	398, 508
Fsp4HI	GCNGC	4 cut(s)	124, 247, 534, 537
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	4 cut(s)	124, 247, 534, 537
HaeIII	GGCC	4 cut(s)	5, 249, 369, 681
HapII	CCGG	5 cut(s)	163, 176, 485, 738, 937
HgaI	GACGC	1 cut(s)	925
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	4 cut(s)	692, 868, 923, 1001
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	632
HindII	GTYRAC	1 cut(s)	632
HinfI	GANTC	3 cut(s)	179, 457, 874
HpaII	CCGG	5 cut(s)	163, 176, 485, 738, 937
HphI	GGTGA	5 cut(s)	13, 25, 136, 390, 499
Hpy166II	GTNNAC	3 cut(s)	13, 632, 968
Hpy188I	TCNGA	5 cut(s)	133, 205, 223, 265, 1025
Hpy188III	TCNNGA	5 cut(s)	163, 524, 878, 937, 1013
Hpy8I	GTNNAC	3 cut(s)	13, 632, 968
Hpy99I	CGWCG	5 cut(s)	79, 158, 161, 194, 197
HpyAV	CCTTC	8 cut(s)	16, 28, 34, 64, 210, 286, 595, 712
HpyCH4IV	ACGT	3 cut(s)	156, 348, 529
HpyCH4V	TGCA	6 cut(s)	240, 259, 382, 533, 571, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 388, 503
HpyF3I	CTNAG	3 cut(s)	392, 442, 855
HpySE526I	ACGT	3 cut(s)	156, 348, 529
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	4 cut(s)	692, 868, 923, 1001
HspAI	GCGC	1 cut(s)	51
Kpn2I	TCCGGA	2 cut(s)	162, 936
Ksp22I	TGATCA	1 cut(s)	661
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	205, 228, 661, 906, 1033
LmnI	GCTCC	4 cut(s)	95, 511, 544, 755
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	1 cut(s)	645
MaeII	ACGT	3 cut(s)	156, 348, 529
MaeIII	GTNAC	4 cut(s)	338, 373, 812, 913
MalI	GATC	5 cut(s)	207, 230, 663, 908, 1035
MbiI	CCGCTC	1 cut(s)	539
MboI	GATC	5 cut(s)	205, 228, 661, 906, 1033
MboII	GAAGA	6 cut(s)	130, 133, 378, 461, 634, 740
MflI	RGATCY	1 cut(s)	1033
MhlI	GDGCHC	2 cut(s)	398, 508
MluCI	AATT	6 cut(s)	233, 282, 328, 452, 605, 961
MmeI	TCCRAC	1 cut(s)	246
MroI	TCCGGA	2 cut(s)	162, 936
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	2 cut(s)	435, 845
MslI	CAYNNNNRTG	2 cut(s)	132, 576
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	5 cut(s)	163, 176, 485, 738, 937
MspR9I	CCNGG	8 cut(s)	148, 344, 366, 371, 462, 485, 651, 1031
Mva1269I	GAATGC	2 cut(s)	382, 1022
MvaI	CCWGG	7 cut(s)	148, 344, 366, 371, 462, 651, 1031
MvnI	CGCG	2 cut(s)	51, 246
MwoI	GCNNNNNNNGC	3 cut(s)	246, 388, 503
NciI	CCSGG	1 cut(s)	485
NdeI	CATATG	1 cut(s)	573
NdeII	GATC	5 cut(s)	205, 228, 661, 906, 1033
NlaIII	CATG	4 cut(s)	692, 868, 923, 1001
NlaIV	GGNNCC	1 cut(s)	507
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	913
NspI	RCATGY	1 cut(s)	923
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 321
PctI	GAATGC	2 cut(s)	382, 1022
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	3 cut(s)	179, 457, 874
PflFI	GACNNNGTC	2 cut(s)	155, 158
PkrI	GCNGC	4 cut(s)	125, 248, 535, 538
Psp124BI	GAGCTC	1 cut(s)	398
Psp6I	CCWGG	7 cut(s)	146, 342, 364, 369, 460, 649, 1029
PspEI	GGTNACC	1 cut(s)	373
PspGI	CCWGG	7 cut(s)	146, 342, 364, 369, 460, 649, 1029
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	1033
PsyI	GACNNNGTC	2 cut(s)	155, 158
RsaI	GTAC	3 cut(s)	305, 771, 1004
RsaNI	GTAC	3 cut(s)	304, 770, 1003
RseI	CAYNNNNRTG	2 cut(s)	132, 576
SacI	GAGCTC	1 cut(s)	398
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	435, 845
SatI	GCNGC	4 cut(s)	124, 247, 534, 537
Sau3AI	GATC	5 cut(s)	205, 228, 661, 906, 1033
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	8 cut(s)	148, 344, 366, 371, 462, 485, 651, 1031
SduI	GDGCHC	2 cut(s)	398, 508
SfaNI	GCATC	1 cut(s)	645
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	2 cut(s)	132, 576
Sse9I	AATT	6 cut(s)	233, 282, 328, 452, 605, 961
SsiI	CCGC	6 cut(s)	36, 124, 244, 246, 537, 1056
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	8 cut(s)	146, 342, 364, 369, 460, 483, 649, 1029
StyI	CCWWGG	1 cut(s)	759
TaiI	ACGT	3 cut(s)	159, 351, 532
TaqI	TCGA	1 cut(s)	994
TasI	AATT	6 cut(s)	233, 282, 328, 452, 605, 961
TauI	GCSGC	3 cut(s)	126, 249, 539
TfiI	GAWTC	3 cut(s)	179, 457, 874
Tru1I	TTAA	2 cut(s)	435, 845
Tru9I	TTAA	2 cut(s)	435, 845
TseFI	GTSAC	1 cut(s)	913
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	1 cut(s)	853
TspGWI	ACGGA	3 cut(s)	260, 330, 349
Tth111I	GACNNNGTC	2 cut(s)	155, 158
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	3 cut(s)	233, 328, 605
XceI	RCATGY	1 cut(s)	923
XmnI	GAANNNNTTC	1 cut(s)	456
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.