Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Forward (+)

4787473 .. 4790084

Gene Structure 2612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G005110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCCTTCGTCCACTCCTTCACCTTCCCCATCACCGCCAAACCTTTTCGCGCCTTCCCCAACCCCCGAACGCCGTCGTTTCCCACACGCTCCACCCTCCCTTTTCACAACCTCCTCACTCGCCGCCACTCCGATGTCTTTTTCACCTGGGACGACGTCGTCCGGATATCCCAACCGGAATCCCACCCCGACGACGACCCTTCCGATCTCAAATGCTACTCCGACAAGATCAAATTCTGCAACCGCGGCCACGAAATGCAATCGGAGTTCCGTTCCTTCGTAATTGAGGACCAAATCGTTGGGTACATTCACAACGGGATAGGAACAAGAGCTGTTGGGGATGTGGTCAAGAGCTTAGGGGAAGAATTGATTCCAGGTATAAGAAATGAGTTTTACCCGGTGACGTCGGCTTTTGGGGCTCCAATATATTTCTCTCTTGAACGTGCAGCCGCTCCTTACTTTGGAATAAAGGTTTATGGAGTGCATATGTGTGGCTATGTTGAGAAAGATGGGAAGGAATTTCTATGGATAGGGAAGAGAAGTCAACAGAAACAGACCTATCCAGGGATGCTTGATCATCTTGTTGCTGGTGGACTGCCTCATGGGGTAGCTTGTGGGGACAATGTTGTGAAGGAATGTGAAGAGGAAGCCGGAATACCAAGCTCCATTTCCAAGGGTGCTGTACCAGTTGGTGCTGTTTCGTATATGGACATTGATGGGTATAGTTACAAAAGGGATGTCTTGTTTTGCTATGATTTAAAACTCCCTGAGAGCTTCATGCCTAAGAATCAAGATGGAGAGGTGGAGAGTTTCAAGTTGATCCCTGTGACGCATGTTGCGAACATCATCCGGAGGACACCATTTTTCAAGCCAAATTGTTCACTTGTCATCATTGATTTCCTGTTTCGACATGGGTACATTAGTCCCGAATGCTTCGGATACCTGGATCTATTACAAAGTTTGAGAAGCGGTAGTTGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

327

Amino Acids

36.77

Weight (kDa)

6.26

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4743	PF15916	109 - 157	3.8e-12	Domain of unknown function (DUF4743)
NUDIX	PF00293	167 - 279	3e-06	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AatII	GACGTC	2 cut(s)	159, 407
AccBSI	CCGCTC	1 cut(s)	452
AccII	CGCG	2 cut(s)	51, 246
AccIII	TCCGGA	2 cut(s)	162, 849
AciI	CCGC	6 cut(s)	36, 124, 244, 246, 450, 969
AclWI	GGATC	2 cut(s)	814, 954
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	233, 518
AcyI	GRCGYC	2 cut(s)	156, 404
AfaI	GTAC	3 cut(s)	305, 684, 917
AfiI	CCNNNNNNNGG	2 cut(s)	461, 564
AgsI	TTSAA	3 cut(s)	440, 814, 868
AjnI	CCWGG	4 cut(s)	146, 373, 562, 942
AjuI	GAANNNNNNNTTGG	2 cut(s)	652, 684
AluBI	AGCT	5 cut(s)	332, 354, 611, 663, 774
AluI	AGCT	5 cut(s)	332, 354, 611, 663, 774
AlwI	GGATC	2 cut(s)	814, 954
Aor13HI	TCCGGA	2 cut(s)	162, 849
AoxI	GGCC	2 cut(s)	3, 247
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	2 cut(s)	233, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	723, 755
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	4 cut(s)	13, 25, 136, 412
AvaII	GGWCC	1 cut(s)	289
BaeI	ACNNNNGTAYC	2 cut(s)	907, 940
BanII	GRGCYC	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	639, 671
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	4 cut(s)	38, 503, 710, 788
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	4 cut(s)	148, 375, 564, 944
BciVI	GTATCC	1 cut(s)	932
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	398
BfuI	GTATCC	1 cut(s)	932
BisI	GCNGC	4 cut(s)	124, 247, 447, 450
BlsI	GCNGC	4 cut(s)	125, 248, 448, 451
Bme1390I	CCNGG	5 cut(s)	148, 375, 398, 564, 944
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	5 cut(s)	148, 375, 398, 564, 944
BmsI	GCATC	1 cut(s)	558
Bpu10I	CCTNAGC	1 cut(s)	355
BpuMI	CCSGG	1 cut(s)	398
BsaHI	GRCGYC	2 cut(s)	156, 404
BsaJI	CCNNGG	4 cut(s)	147, 244, 563, 672
BsaWI	WCCGGW	3 cut(s)	162, 175, 849
Bsc4I	CCNNNNNNNGG	2 cut(s)	461, 564
Bse1I	ACTGG	1 cut(s)	686
BseAI	TCCGGA	2 cut(s)	162, 849
BseBI	CCWGG	4 cut(s)	148, 375, 564, 944
BseDI	CCNNGG	4 cut(s)	147, 244, 563, 672
BseGI	GGATG	4 cut(s)	346, 573, 742, 846
BseLI	CCNNNNNNNGG	2 cut(s)	461, 564
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	1 cut(s)	686
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	2 cut(s)	51, 246
BshFI	GGCC	2 cut(s)	5, 249
BsiSI	CCGG	5 cut(s)	163, 176, 398, 651, 850
BslFI	GGGAC	3 cut(s)	164, 632, 909
BslI	CCNNNNNNNGG	2 cut(s)	461, 564
BsmFI	GGGAC	3 cut(s)	164, 632, 909
BsmI	GAATGC	1 cut(s)	935
BsnI	GGCC	2 cut(s)	5, 249
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp13I	TCCGGA	2 cut(s)	162, 849
Bsp143I	GATC	5 cut(s)	205, 228, 574, 819, 946
BspACI	CCGC	6 cut(s)	36, 124, 244, 246, 450, 969
BspANI	GGCC	2 cut(s)	5, 249
BspCNI	CTCAG	1 cut(s)	760
BspEI	TCCGGA	2 cut(s)	162, 849
BspFNI	CGCG	2 cut(s)	51, 246
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	2 cut(s)	814, 954
BsrBI	CCGCTC	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	686
BssECI	CCNNGG	4 cut(s)	147, 244, 563, 672
BssMI	GATC	5 cut(s)	205, 228, 574, 819, 946
BssNI	GRCGYC	2 cut(s)	156, 404
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	4 cut(s)	148, 375, 564, 944
Bst6I	CTCTTC	2 cut(s)	530, 636
BstACI	GRCGYC	2 cut(s)	156, 404
BstDEI	CTNAG	3 cut(s)	355, 768, 783
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	4 cut(s)	346, 573, 742, 846
BstFNI	CGCG	2 cut(s)	51, 246
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	5 cut(s)	208, 231, 577, 822, 949
BstMBI	GATC	5 cut(s)	205, 228, 574, 819, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 416
BstNI	CCWGG	4 cut(s)	148, 375, 564, 944
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	5 cut(s)	146, 373, 396, 562, 942
BstUI	CGCG	2 cut(s)	51, 246
BstV1I	GCAGC	1 cut(s)	458
BstX2I	RGATCY	1 cut(s)	946
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	946
BsuI	GTATCC	1 cut(s)	932
BsuRI	GGCC	2 cut(s)	5, 249
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	4 cut(s)	346, 573, 742, 846
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	289
Cfr42I	CCGCGG	1 cut(s)	247
CseI	GACGC	1 cut(s)	838
Csp6I	GTAC	3 cut(s)	304, 683, 916
CviAII	CATG	4 cut(s)	602, 778, 833, 911
CviQI	GTAC	3 cut(s)	304, 683, 916
DdeI	CTNAG	3 cut(s)	355, 768, 783
DpnI	GATC	5 cut(s)	207, 230, 576, 821, 948
DpnII	GATC	5 cut(s)	205, 228, 574, 819, 946
DraI	TTTAAA	1 cut(s)	759
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	530, 636
EarI	CTCTTC	2 cut(s)	530, 636
Eco130I	CCWWGG	1 cut(s)	672
Eco24I	GRGCYC	1 cut(s)	421
Eco32I	GATATC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	289
EcoRII	CCWGG	4 cut(s)	146, 373, 562, 942
EcoRV	GATATC	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	672
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	4 cut(s)	605, 781, 836, 914
FaqI	GGGAC	3 cut(s)	164, 632, 909
FatI	CATG	4 cut(s)	601, 777, 832, 910
FauNDI	CATATG	1 cut(s)	486
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	4 cut(s)	124, 247, 447, 450
FokI	GGATG	4 cut(s)	353, 580, 749, 833
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	4 cut(s)	124, 247, 447, 450
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	4 cut(s)	124, 247, 447, 450
HaeIII	GGCC	2 cut(s)	5, 249
HapII	CCGG	5 cut(s)	163, 176, 398, 651, 850
HgaI	GACGC	1 cut(s)	838
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	2 cut(s)	156, 404
Hin1II	CATG	4 cut(s)	605, 781, 836, 914
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	545
HindII	GTYRAC	1 cut(s)	545
HinfI	GANTC	3 cut(s)	179, 370, 787
HpaII	CCGG	5 cut(s)	163, 176, 398, 651, 850
HphI	GGTGA	4 cut(s)	13, 25, 136, 412
Hpy166II	GTNNAC	4 cut(s)	13, 545, 593, 881
Hpy188I	TCNGA	5 cut(s)	133, 205, 223, 265, 938
Hpy188III	TCNNGA	6 cut(s)	163, 349, 437, 791, 850, 926
Hpy8I	GTNNAC	4 cut(s)	13, 545, 593, 881
Hpy99I	CGWCG	6 cut(s)	79, 158, 161, 194, 197, 409
HpyAV	CCTTC	8 cut(s)	16, 28, 34, 64, 210, 286, 508, 625
HpyCH4IV	ACGT	3 cut(s)	156, 404, 442
HpyCH4V	TGCA	4 cut(s)	240, 259, 446, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 416
HpyF3I	CTNAG	3 cut(s)	355, 768, 783
HpySE526I	ACGT	3 cut(s)	156, 404, 442
Hsp92I	GRCGYC	2 cut(s)	156, 404
Hsp92II	CATG	4 cut(s)	605, 781, 836, 914
HspAI	GCGC	1 cut(s)	51
Kpn2I	TCCGGA	2 cut(s)	162, 849
Ksp22I	TGATCA	1 cut(s)	574
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	205, 228, 574, 819, 946
LmnI	GCTCC	4 cut(s)	95, 424, 457, 668
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	1 cut(s)	558
MaeII	ACGT	3 cut(s)	156, 404, 442
MaeIII	GTNAC	3 cut(s)	400, 725, 826
MalI	GATC	5 cut(s)	207, 230, 576, 821, 948
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	5 cut(s)	205, 228, 574, 819, 946
MboII	GAAGA	3 cut(s)	374, 547, 653
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	5 cut(s)	233, 282, 365, 518, 874
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	8 cut(s)	107, 122, 125, 280, 609, 637, 793, 846
MroI	TCCGGA	2 cut(s)	162, 849
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	1 cut(s)	758
MslI	CAYNNNNRTG	2 cut(s)	132, 489
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	5 cut(s)	163, 176, 398, 651, 850
MspR9I	CCNGG	5 cut(s)	148, 375, 398, 564, 944
Mva1269I	GAATGC	1 cut(s)	935
MvaI	CCWGG	4 cut(s)	148, 375, 564, 944
MvnI	CGCG	2 cut(s)	51, 246
MwoI	GCNNNNNNNGC	2 cut(s)	246, 416
NciI	CCSGG	1 cut(s)	398
NdeI	CATATG	1 cut(s)	486
NdeII	GATC	5 cut(s)	205, 228, 574, 819, 946
NlaIII	CATG	4 cut(s)	605, 781, 836, 914
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	2 cut(s)	400, 826
NspI	RCATGY	1 cut(s)	836
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 836
PctI	GAATGC	1 cut(s)	935
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	179, 370, 787
PflFI	GACNNNGTC	2 cut(s)	155, 158
PkrI	GCNGC	4 cut(s)	125, 248, 448, 451
Psp6I	CCWGG	4 cut(s)	146, 373, 562, 942
PspGI	CCWGG	4 cut(s)	146, 373, 562, 942
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	946
PsyI	GACNNNGTC	2 cut(s)	155, 158
RsaI	GTAC	3 cut(s)	305, 684, 917
RsaNI	GTAC	3 cut(s)	304, 683, 916
RseI	CAYNNNNRTG	2 cut(s)	132, 489
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	758
SatI	GCNGC	4 cut(s)	124, 247, 447, 450
Sau3AI	GATC	5 cut(s)	205, 228, 574, 819, 946
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	5 cut(s)	148, 375, 398, 564, 944
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	558
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	2 cut(s)	132, 489
Sse9I	AATT	5 cut(s)	233, 282, 365, 518, 874
SsiI	CCGC	6 cut(s)	36, 124, 244, 246, 450, 969
StyD4I	CCNGG	5 cut(s)	146, 373, 396, 562, 942
StyI	CCWWGG	1 cut(s)	672
TaiI	ACGT	3 cut(s)	159, 407, 445
TaqI	TCGA	1 cut(s)	907
TasI	AATT	5 cut(s)	233, 282, 365, 518, 874
TauI	GCSGC	3 cut(s)	126, 249, 452
TfiI	GAWTC	3 cut(s)	179, 370, 787
Tru1I	TTAA	1 cut(s)	758
Tru9I	TTAA	1 cut(s)	758
TseFI	GTSAC	2 cut(s)	400, 826
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	2 cut(s)	400, 826
TspDTI	ATGAA	1 cut(s)	766
TspGWI	ACGGA	1 cut(s)	260
Tth111I	GACNNNGTC	2 cut(s)	155, 158
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	2 cut(s)	233, 518
XceI	RCATGY	1 cut(s)	836
XmnI	GAANNNNTTC	1 cut(s)	369
ZraI	GACGTC	2 cut(s)	157, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.