Rmu_sc0003305.1_g000014

Nudix hydrolase 20

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003305.1
Physical Location & Seq
Reverse (-)
49856 .. 52695
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003305.1_g000014.1.cds

Sequence Viewer

Length: 1152 bp
atggccttcgtccactccttcaccttccccatcaccgccaaaccttttcgcgccttccccaacccccgaacgccgtcgtttcccacgcgctccaccctcccttttcacaacctcctcactcgccgccactccgatgtcttcttcacctgggacgacgtcgtccggatatcccaaccggaatccctccccgacgacgacccttccgatctcaaatgctactccgataagatcaaattctgcaaccgcggccacgaaatgcaatcggagttccgttccttcgtaattgaggaccaaatcgttgggtacattcacaacggatttgccgagaatttacggagttaccaggacgtttttacttttccaccaggccaggtaaccctgcattcttcgctgagctcacccgaggataggacaagagctgttggggatgtggttaagagcttaggggaagaattgattccaggtataagaaatgagttttacccggtgacgtcggcttttggggctccaatatatttctctcttgaacgtgcagcggctccttactttggaataaaggtttatggagtgcatatgtgtggctatgttgagaaagatgggaaggaatttctatggatagggaagagaagtcaacagaaacagacctatccagggatgcttgatcatcttgttgctggtggactgcctcatggggtagcttgtggggacaatgttgtgaaggaatgtgaagaggaagccggaataccaagctccatttccaagggtgctgtaccagttggtgctgtttcgtatatggacattgatgggtatagttacaaaagggatgtcttgttttgctatgatttaaaactccctgagagcttcatgcctaagaatcaagatggagaggtggagagtttcaagttgatccctgtgatgcatgttgcgaacatcatccggaggacaccatttttcaagccaaattgttcacttgtcatcattgatttcctgtttcgacatgggtacattagtcccgaatgcttcggatacctggatctattacaaagtttgagaagcgttaagtatcaaaaaccgaacactagtgtttctcgagactggaaaagggagaccacagttaatgtacttggaattcttcctccaccaacaccgtag

Protein Analysis

383

Amino Acids

43.28

Weight (kDa)

6.42

Isoelectric Point (pI)

57.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AatII GACGTC 2 cut(s) 159, 494
AccII CGCG 3 cut(s) 51, 88, 246
AccIII TCCGGA 2 cut(s) 162, 936
AciI CCGC 5 cut(s) 36, 124, 244, 246, 536
AclWI GGATC 2 cut(s) 901, 1041
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 4 cut(s) 233, 328, 605, 1128
AcyI GRCGYC 2 cut(s) 156, 491
AfaI GTAC 4 cut(s) 305, 771, 1004, 1122
AfiI CCNNNNNNNGG 3 cut(s) 408, 548, 651
AgsI TTSAA 3 cut(s) 527, 901, 955
AhlI ACTAGT 1 cut(s) 1079
AjnI CCWGG 7 cut(s) 146, 342, 364, 369, 460, 649, 1029
AjuI GAANNNNNNNTTGG 2 cut(s) 739, 771
AluBI AGCT 6 cut(s) 396, 419, 441, 698, 750, 861
AluI AGCT 6 cut(s) 396, 419, 441, 698, 750, 861
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 2 cut(s) 1086, 1100
AlwI GGATC 2 cut(s) 901, 1041
Ama87I CYCGRG 2 cut(s) 401, 1089
Aor13HI TCCGGA 2 cut(s) 162, 936
AoxI GGCC 3 cut(s) 3, 247, 367
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 4 cut(s) 233, 328, 605, 1128
ArsI GACNNNNNNTTYG 2 cut(s) 810, 842
Asp700I GAANNNNTTC 1 cut(s) 456
AspLEI GCGC 2 cut(s) 53, 90
AspS9I GGNCC 1 cut(s) 289
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 5 cut(s) 13, 25, 136, 390, 499
AvaI CYCGRG 2 cut(s) 401, 1089
AvaII GGWCC 1 cut(s) 289
BaeI ACNNNNGTAYC 2 cut(s) 994, 1027
BanII GRGCYC 2 cut(s) 398, 508
BarI GAAGNNNNNNTAC 2 cut(s) 726, 758
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 545
BccI CCATC 4 cut(s) 38, 590, 797, 875
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 7 cut(s) 148, 344, 366, 371, 462, 651, 1031
BciVI GTATCC 1 cut(s) 1019
BclI TGATCA 1 cut(s) 661
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 2 cut(s) 1086, 1100
BcuI ACTAGT 1 cut(s) 1079
BfaI CTAG 1 cut(s) 1080
BfuI GTATCC 1 cut(s) 1019
BisI GCNGC 4 cut(s) 124, 247, 534, 537
BlpI GCTNAGC 1 cut(s) 392
BlsI GCNGC 4 cut(s) 125, 248, 535, 538
Bme1390I CCNGG 8 cut(s) 148, 344, 366, 371, 462, 485, 651, 1031
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 2 cut(s) 401, 1089
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 507, 540
BmrFI CCNGG 8 cut(s) 148, 344, 366, 371, 462, 485, 651, 1031
BmsI GCATC 2 cut(s) 645, 906
BpiI GAAGAC 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 442
Bpu1102I GCTNAGC 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 485
BsaHI GRCGYC 2 cut(s) 156, 491
BsaI GGTCTC 1 cut(s) 1100
BsaJI CCNNGG 5 cut(s) 147, 244, 402, 650, 759
BsaWI WCCGGW 3 cut(s) 162, 175, 936
Bsc4I CCNNNNNNNGG 3 cut(s) 408, 548, 651
Bse1I ACTGG 2 cut(s) 773, 1100
BseAI TCCGGA 2 cut(s) 162, 936
BseBI CCWGG 7 cut(s) 148, 344, 366, 371, 462, 651, 1031
BseDI CCNNGG 5 cut(s) 147, 244, 402, 650, 759
BseGI GGATG 4 cut(s) 433, 660, 829, 933
BseLI CCNNNNNNNGG 3 cut(s) 408, 548, 651
BseMII CTCAG 2 cut(s) 383, 846
BseNI ACTGG 2 cut(s) 773, 1100
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 545
BsgI GTGCAG 1 cut(s) 552
Bsh1236I CGCG 3 cut(s) 51, 88, 246
BshFI GGCC 3 cut(s) 5, 249, 369
BsiHKAI GWGCWC 1 cut(s) 398
BsiHKCI CYCGRG 2 cut(s) 401, 1089
BsiSI CCGG 5 cut(s) 163, 176, 485, 738, 937
BslFI GGGAC 3 cut(s) 164, 719, 996
BslI CCNNNNNNNGG 3 cut(s) 408, 548, 651
BsmAI GTCTC 2 cut(s) 1086, 1100
BsmFI GGGAC 3 cut(s) 164, 719, 996
BsmI GAATGC 2 cut(s) 382, 1022
BsnI GGCC 3 cut(s) 5, 249, 369
Bso31I GGTCTC 1 cut(s) 1100
BsoBI CYCGRG 2 cut(s) 401, 1089
Bsp1286I GDGCHC 2 cut(s) 398, 508
Bsp13I TCCGGA 2 cut(s) 162, 936
Bsp143I GATC 5 cut(s) 205, 228, 661, 906, 1033
Bsp1720I GCTNAGC 1 cut(s) 392
BspACI CCGC 5 cut(s) 36, 124, 244, 246, 536
BspANI GGCC 3 cut(s) 5, 249, 369
BspCNI CTCAG 2 cut(s) 384, 847
BspEI TCCGGA 2 cut(s) 162, 936
BspFNI CGCG 3 cut(s) 51, 88, 246
BspLI GGNNCC 2 cut(s) 507, 540
BspPI GGATC 2 cut(s) 901, 1041
BspTNI GGTCTC 1 cut(s) 1100
BsrI ACTGG 2 cut(s) 773, 1100
BssECI CCNNGG 5 cut(s) 147, 244, 402, 650, 759
BssMI GATC 5 cut(s) 205, 228, 661, 906, 1033
BssNI GRCGYC 2 cut(s) 156, 491
BssT1I CCWWGG 1 cut(s) 759
Bst2UI CCWGG 7 cut(s) 148, 344, 366, 371, 462, 651, 1031
Bst4CI ACNGT 2 cut(s) 1114, 1149
Bst6I CTCTTC 2 cut(s) 617, 723
BstACI GRCGYC 2 cut(s) 156, 491
BstDEI CTNAG 4 cut(s) 392, 442, 855, 870
BstDSI CCRYGG 1 cut(s) 244
BstEII GGTNACC 1 cut(s) 373
BstF5I GGATG 4 cut(s) 433, 660, 829, 933
BstFNI CGCG 3 cut(s) 51, 88, 246
BstHHI GCGC 2 cut(s) 53, 90
BstKTI GATC 5 cut(s) 208, 231, 664, 909, 1036
BstMAI GTCTC 2 cut(s) 1086, 1100
BstMBI GATC 5 cut(s) 205, 228, 661, 906, 1033
BstMWI GCNNNNNNNGC 3 cut(s) 246, 388, 503
BstNI CCWGG 7 cut(s) 148, 344, 366, 371, 462, 651, 1031
BstNSI RCATGY 1 cut(s) 923
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 8 cut(s) 146, 342, 364, 369, 460, 483, 649, 1029
BstUI CGCG 3 cut(s) 51, 88, 246
BstV1I GCAGC 1 cut(s) 545
BstV2I GAAGAC 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 1033
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 1 cut(s) 1033
BsuI GTATCC 1 cut(s) 1019
BsuRI GGCC 3 cut(s) 5, 249, 369
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 4 cut(s) 433, 660, 829, 933
CfoI GCGC 2 cut(s) 53, 90
Cfr13I GGNCC 1 cut(s) 289
Cfr42I CCGCGG 1 cut(s) 247
Csp6I GTAC 4 cut(s) 304, 770, 1003, 1121
CviAII CATG 4 cut(s) 689, 865, 920, 998
CviQI GTAC 4 cut(s) 304, 770, 1003, 1121
DdeI CTNAG 4 cut(s) 392, 442, 855, 870
DpnI GATC 5 cut(s) 207, 230, 663, 908, 1035
DpnII GATC 5 cut(s) 205, 228, 661, 906, 1033
DraI TTTAAA 1 cut(s) 846
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 617, 723
EarI CTCTTC 2 cut(s) 617, 723
Ecl136II GAGCTC 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 759
Eco24I GRGCYC 2 cut(s) 398, 508
Eco31I GGTCTC 1 cut(s) 1100
Eco32I GATATC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 396
Eco88I CYCGRG 2 cut(s) 401, 1089
Eco91I GGTNACC 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 396
EcoO65I GGTNACC 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 1128
EcoRII CCWGG 7 cut(s) 146, 342, 364, 369, 460, 649, 1029
EcoRV GATATC 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 759
EcoT22I ATGCAT 1 cut(s) 921
EcoT38I GRGCYC 2 cut(s) 398, 508
ErhI CCWWGG 1 cut(s) 759
FaeI CATG 4 cut(s) 692, 868, 923, 1001
FaqI GGGAC 3 cut(s) 164, 719, 996
FatI CATG 4 cut(s) 688, 864, 919, 997
FauNDI CATATG 1 cut(s) 573
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 4 cut(s) 124, 247, 534, 537
FokI GGATG 4 cut(s) 440, 667, 836, 920
FriOI GRGCYC 2 cut(s) 398, 508
Fsp4HI GCNGC 4 cut(s) 124, 247, 534, 537
FspBI CTAG 1 cut(s) 1080
GlaI GCGC 2 cut(s) 52, 89
GluI GCNGC 4 cut(s) 124, 247, 534, 537
HaeIII GGCC 3 cut(s) 5, 249, 369
HapII CCGG 5 cut(s) 163, 176, 485, 738, 937
HhaI GCGC 2 cut(s) 53, 90
Hin1I GRCGYC 2 cut(s) 156, 491
Hin1II CATG 4 cut(s) 692, 868, 923, 1001
Hin6I GCGC 2 cut(s) 51, 88
HinP1I GCGC 2 cut(s) 51, 88
HincII GTYRAC 1 cut(s) 632
HindII GTYRAC 1 cut(s) 632
HinfI GANTC 3 cut(s) 179, 457, 874
HpaII CCGG 5 cut(s) 163, 176, 485, 738, 937
HphI GGTGA 5 cut(s) 13, 25, 136, 390, 499
Hpy166II GTNNAC 4 cut(s) 13, 632, 680, 968
Hpy188I TCNGA 5 cut(s) 133, 205, 223, 265, 1025
Hpy188III TCNNGA 7 cut(s) 163, 524, 878, 937, 1013, 1089, 1091
Hpy8I GTNNAC 4 cut(s) 13, 632, 680, 968
Hpy99I CGWCG 6 cut(s) 79, 158, 161, 194, 197, 496
HpyAV CCTTC 8 cut(s) 16, 28, 34, 64, 210, 286, 595, 712
HpyCH4III ACNGT 2 cut(s) 1114, 1149
HpyCH4IV ACGT 4 cut(s) 156, 348, 491, 529
HpyCH4V TGCA 6 cut(s) 240, 259, 382, 533, 571, 919
HpyF10VI GCNNNNNNNGC 3 cut(s) 246, 388, 503
HpyF3I CTNAG 4 cut(s) 392, 442, 855, 870
HpySE526I ACGT 4 cut(s) 156, 348, 491, 529
Hsp92I GRCGYC 2 cut(s) 156, 491
Hsp92II CATG 4 cut(s) 692, 868, 923, 1001
HspAI GCGC 2 cut(s) 51, 88
Kpn2I TCCGGA 2 cut(s) 162, 936
Ksp22I TGATCA 1 cut(s) 661
KspI CCGCGG 1 cut(s) 247
Kzo9I GATC 5 cut(s) 205, 228, 661, 906, 1033
LmnI GCTCC 4 cut(s) 95, 511, 544, 755
Lsp1109I GCAGC 1 cut(s) 545
LweI GCATC 2 cut(s) 645, 906
MaeI CTAG 1 cut(s) 1080
MaeII ACGT 4 cut(s) 156, 348, 491, 529
MaeIII GTNAC 4 cut(s) 338, 373, 487, 812
MalI GATC 5 cut(s) 207, 230, 663, 908, 1035
MboI GATC 5 cut(s) 205, 228, 661, 906, 1033
MboII GAAGA 7 cut(s) 130, 133, 378, 461, 634, 740, 1124
MflI RGATCY 1 cut(s) 1033
MhlI GDGCHC 2 cut(s) 398, 508
MluCI AATT 7 cut(s) 233, 282, 328, 452, 605, 961, 1128
Mph1103I ATGCAT 1 cut(s) 921
MroI TCCGGA 2 cut(s) 162, 936
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 4 cut(s) 435, 845, 1059, 1116
MslI CAYNNNNRTG 2 cut(s) 132, 576
MspA1I CMGCKG 2 cut(s) 246, 536
MspI CCGG 5 cut(s) 163, 176, 485, 738, 937
MspR9I CCNGG 8 cut(s) 148, 344, 366, 371, 462, 485, 651, 1031
Mva1269I GAATGC 2 cut(s) 382, 1022
MvaI CCWGG 7 cut(s) 148, 344, 366, 371, 462, 651, 1031
MvnI CGCG 3 cut(s) 51, 88, 246
MwoI GCNNNNNNNGC 3 cut(s) 246, 388, 503
NciI CCSGG 1 cut(s) 485
NdeI CATATG 1 cut(s) 573
NdeII GATC 5 cut(s) 205, 228, 661, 906, 1033
NlaIII CATG 4 cut(s) 692, 868, 923, 1001
NlaIV GGNNCC 2 cut(s) 507, 540
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 921
NspI RCATGY 1 cut(s) 923
PaeR7I CTCGAG 1 cut(s) 1089
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 321
PctI GAATGC 2 cut(s) 382, 1022
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 3 cut(s) 179, 457, 874
PflFI GACNNNGTC 2 cut(s) 155, 158
PkrI GCNGC 4 cut(s) 125, 248, 535, 538
Psp124BI GAGCTC 1 cut(s) 398
Psp6I CCWGG 7 cut(s) 146, 342, 364, 369, 460, 649, 1029
PspEI GGTNACC 1 cut(s) 373
PspGI CCWGG 7 cut(s) 146, 342, 364, 369, 460, 649, 1029
PspN4I GGNNCC 2 cut(s) 507, 540
PspPI GGNCC 1 cut(s) 289
PsuI RGATCY 1 cut(s) 1033
PsyI GACNNNGTC 2 cut(s) 155, 158
RsaI GTAC 4 cut(s) 305, 771, 1004, 1122
RsaNI GTAC 4 cut(s) 304, 770, 1003, 1121
RseI CAYNNNNRTG 2 cut(s) 132, 576
SacI GAGCTC 1 cut(s) 398
SacII CCGCGG 1 cut(s) 247
SaqAI TTAA 4 cut(s) 435, 845, 1059, 1116
SatI GCNGC 4 cut(s) 124, 247, 534, 537
Sau3AI GATC 5 cut(s) 205, 228, 661, 906, 1033
Sau96I GGNCC 1 cut(s) 289
ScrFI CCNGG 8 cut(s) 148, 344, 366, 371, 462, 485, 651, 1031
SduI GDGCHC 2 cut(s) 398, 508
SfaNI GCATC 2 cut(s) 645, 906
Sfr274I CTCGAG 1 cut(s) 1089
Sfr303I CCGCGG 1 cut(s) 247
SgrBI CCGCGG 1 cut(s) 247
SinI GGWCC 1 cut(s) 289
SlaI CTCGAG 1 cut(s) 1089
SmiMI CAYNNNNRTG 2 cut(s) 132, 576
SmlI CTYRAG 1 cut(s) 1089
SmoI CTYRAG 1 cut(s) 1089
SpeI ACTAGT 1 cut(s) 1079
Sse9I AATT 7 cut(s) 233, 282, 328, 452, 605, 961, 1128
SsiI CCGC 5 cut(s) 36, 124, 244, 246, 536
SspMI CTAG 1 cut(s) 1080
SstI GAGCTC 1 cut(s) 398
StyD4I CCNGG 8 cut(s) 146, 342, 364, 369, 460, 483, 649, 1029
StyI CCWWGG 1 cut(s) 759
TaaI ACNGT 2 cut(s) 1114, 1149
TaiI ACGT 4 cut(s) 159, 351, 494, 532
TaqI TCGA 2 cut(s) 994, 1090
TasI AATT 7 cut(s) 233, 282, 328, 452, 605, 961, 1128
TatI WGTACW 1 cut(s) 1120
TauI GCSGC 3 cut(s) 126, 249, 539
TfiI GAWTC 3 cut(s) 179, 457, 874
Tru1I TTAA 4 cut(s) 435, 845, 1059, 1116
Tru9I TTAA 4 cut(s) 435, 845, 1059, 1116
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 1 cut(s) 533
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 1 cut(s) 853
TspGWI ACGGA 3 cut(s) 260, 330, 349
Tth111I GACNNNGTC 2 cut(s) 155, 158
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 4 cut(s) 233, 328, 605, 1128
XceI RCATGY 1 cut(s) 923
XhoI CTCGAG 1 cut(s) 1089
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 1 cut(s) 1080
ZraI GACGTC 2 cut(s) 157, 492
Zsp2I ATGCAT 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.