MD15G1189600.v1.1

Nudix hydrolase 20

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
14952070 .. 14955227
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1189600.v1.1.491

Sequence Viewer

Length: 1137 bp
ATGGCCTCCATCAGCGGCGGCAGTCTTCTCGTCGACTCTTTGGTCTCACGTTTCACTGCCAAAGCTTTTCGCGCGTTCCCCAACTCCCTCACGACGTCGCGTCCACTTCGATCCGCCCCCAAAGCTATTCACGAAATCCTCACTTCTCGCAGCGTATCTGTCTCTGCAGCCTCAGATGTCTTCACTTGGGACGACGTCGTCCGGATCTCCAAACCGGATGCCCTTCAGGACGACCCTTCAGATCTCAAAGGCTACTCTGACAAGATCAAAATCTGCAATCGCGGACTGGAATCTCAATCGGAGTTCATGCCGTTTGTGATTGAGGACCAAATTATTGGTTACATTCACAATGGTTTTGCTGAGAAGTTACATAGTTTCAAGGACGTGTTTGTTTTCCCGCCAGAAAATTCAAATTCTGATGATGGTGGCGGCTCAATGACCTTGCATTCTTCACTGCGCACGGCGGAGGATAGGACGCGAGCGGTGGGAGATGTAATCAAAAGCTTAGGGGAAGAAGAACTGATTCCAGGTATAAGAAATGAGCTATACCCGGTGGCATCATCCTTTGGGGCACCCATATGTTTCTCTCTAGAACGTGCTGCTGCGCCTTATTTCGGAATAAAGGCTTATGGAGTGCAAATGAATGGCTATGTTGAAAAGGATGGCCAGAAGTTTCTATGGATAGGGAAGAGAAGCCAACAGAAATCCACTTATCCAGGGATGCTTGATCAGCTCGTTGCTGGGGGACTGCCTCACGGGGTTGCATGTGGGGAAAATGTTGTAAAGGAATGTGAAGAGGAAGCCGGAATACCCAGACCCATTTCCAGTGTAGCTGTACCAGTTGGAGCTGTTTCTTATATGGACATTGATGGGTATAGATACAAAAGGGATGTTTTGTTTTGCTATGATTTAAAGCTTCCTGAGAGTTTCATGCCAAAGAATCAAGATGGAGAGGTGGAGAGCTTCAAGTTGATTCCAGTGACTCATGTTGCAAACATCATACGGAGGACGCAATTTTTCAAGCCAAATTGCTCTCTCGTCATCATTGACTTCCTTTTTCGACACGGGTACATTAGGCCCGAGTCCTTCGGATACCTGGATCTGCTACAAAGTTTGAGGAGCGGCGATTGTTCTTAA

Protein Analysis

379

Amino Acids

41.72

Weight (kDa)

5.74

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4743 PF15916 87 - 209 6.8e-35 Domain of unknown function (DUF4743)
NUDIX PF00293 221 - 330 5.4e-07 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 41, 197
AatII GACGTC 2 cut(s) 98, 198
Acc16I TGCGCA 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 571
AccBSI CCGCTC 2 cut(s) 482, 1122
AccI GTMKAC 1 cut(s) 33
AccII CGCG 5 cut(s) 72, 74, 100, 282, 478
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 9 cut(s) 15, 18, 114, 282, 398, 429, 464, 482, 1122
AclWI GGATC 3 cut(s) 105, 212, 1107
AcoI YGGCCR 1 cut(s) 664
AcsI RAATTY 2 cut(s) 406, 412
AcuI CTGAAG 2 cut(s) 209, 222
AcyI GRCGYC 2 cut(s) 95, 195
AfaI GTAC 2 cut(s) 837, 1070
AfiI CCNNNNNNNGG 1 cut(s) 614
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 5 cut(s) 379, 411, 656, 967, 1021
AhdI GACNNNNNGTC 1 cut(s) 99
AjiI CACGTC 1 cut(s) 385
AjnI CCWGG 3 cut(s) 526, 715, 1095
AluBI AGCT 9 cut(s) 65, 125, 504, 544, 733, 833, 848, 916, 963
AluI AGCT 9 cut(s) 65, 125, 504, 544, 733, 833, 848, 916, 963
Alw26I GTCTC 2 cut(s) 49, 166
AlwI GGATC 3 cut(s) 105, 212, 1107
Ama87I CYCGRG 1 cut(s) 1079
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 3 cut(s) 3, 664, 1076
ApeKI GCWGC 4 cut(s) 150, 167, 599, 602
ApoI RAATTY 2 cut(s) 406, 412
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 3 cut(s) 74, 459, 607
AspS9I GGNCC 2 cut(s) 325, 1077
AsuC2I CCSGG 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 1079
AvaII GGWCC 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 574
BalI TGGCCA 1 cut(s) 666
BanI GGYRCC 1 cut(s) 571
BarI GAAGNNNNNNTAC 2 cut(s) 792, 824
BbsI GAAGAC 2 cut(s) 17, 172
BbvI GCAGC 4 cut(s) 162, 179, 586, 589
BccI CCATC 5 cut(s) 17, 416, 656, 863, 941
BceAI ACGGC 2 cut(s) 295, 477
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 3 cut(s) 528, 717, 1097
BciVI GTATCC 1 cut(s) 1085
BclI TGATCA 1 cut(s) 727
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 2 cut(s) 49, 166
BfaI CTAG 1 cut(s) 590
BfmI CTRYAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 1085
BglII AGATCT 1 cut(s) 241
BisI GCNGC 8 cut(s) 16, 19, 151, 168, 430, 600, 603, 1123
BlsI GCNGC 8 cut(s) 17, 20, 152, 169, 431, 601, 604, 1124
Bme1390I CCNGG 4 cut(s) 528, 551, 717, 1097
Bme18I GGWCC 1 cut(s) 325
BmeRI GACNNNNNGTC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 1079
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 325, 1077
BmiI GGNNCC 1 cut(s) 573
BmrFI CCNGG 4 cut(s) 528, 551, 717, 1097
BmsI GCATC 3 cut(s) 208, 566, 711
BpiI GAAGAC 2 cut(s) 17, 172
Bpu10I CCTNAGC 1 cut(s) 505
BpuMI CCSGG 1 cut(s) 551
BsaBI GATNNNNATC 1 cut(s) 269
BsaHI GRCGYC 2 cut(s) 95, 195
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 716
BsaWI WCCGGW 2 cut(s) 201, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse1I ACTGG 4 cut(s) 291, 825, 839, 977
Bse8I GATNNNNATC 1 cut(s) 269
BseAI TCCGGA 1 cut(s) 201
BseBI CCWGG 3 cut(s) 528, 717, 1097
BseDI CCNNGG 1 cut(s) 716
BseGI GGATG 5 cut(s) 223, 560, 667, 726, 895
BseJI GATNNNNATC 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMII CTCAG 3 cut(s) 186, 351, 912
BseNI ACTGG 4 cut(s) 291, 825, 839, 977
BseRI GAGGAG 1 cut(s) 1132
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 4 cut(s) 162, 179, 586, 589
BseYI CCCAGC 1 cut(s) 740
Bsh1236I CGCG 5 cut(s) 72, 74, 100, 282, 478
BshFI GGCC 3 cut(s) 5, 666, 1078
BshNI GGYRCC 1 cut(s) 571
BsiHKCI CYCGRG 1 cut(s) 1079
BsiSI CCGG 4 cut(s) 202, 215, 551, 804
BslFI GGGAC 2 cut(s) 203, 759
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 2 cut(s) 49, 166
BsmFI GGGAC 2 cut(s) 203, 759
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 3 cut(s) 5, 666, 1078
Bso31I GGTCTC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 1079
Bsp1286I GDGCHC 1 cut(s) 574
Bsp13I TCCGGA 1 cut(s) 201
Bsp143I GATC 6 cut(s) 110, 204, 241, 264, 727, 1099
BspACI CCGC 9 cut(s) 15, 18, 114, 282, 398, 429, 464, 482, 1122
BspANI GGCC 3 cut(s) 5, 666, 1078
BspCNI CTCAG 3 cut(s) 185, 352, 913
BspEI TCCGGA 1 cut(s) 201
BspFNI CGCG 5 cut(s) 72, 74, 100, 282, 478
BspLI GGNNCC 1 cut(s) 573
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 3 cut(s) 105, 212, 1107
BspT107I GGYRCC 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 49
BsrBI CCGCTC 2 cut(s) 482, 1122
BsrI ACTGG 4 cut(s) 291, 825, 839, 977
BssECI CCNNGG 1 cut(s) 716
BssMI GATC 6 cut(s) 110, 204, 241, 264, 727, 1099
BssNI GRCGYC 2 cut(s) 95, 195
Bst2UI CCWGG 3 cut(s) 528, 717, 1097
Bst6I CTCTTC 2 cut(s) 683, 789
BstACI GRCGYC 2 cut(s) 95, 195
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 4 cut(s) 172, 360, 505, 921
BstF5I GGATG 5 cut(s) 223, 560, 667, 726, 895
BstFNI CGCG 5 cut(s) 72, 74, 100, 282, 478
BstHHI GCGC 3 cut(s) 74, 459, 607
BstKTI GATC 6 cut(s) 113, 207, 244, 267, 730, 1102
BstMAI GTCTC 2 cut(s) 49, 166
BstMBI GATC 6 cut(s) 110, 204, 241, 264, 727, 1099
BstMWI GCNNNNNNNGC 3 cut(s) 71, 122, 730
BstNI CCWGG 3 cut(s) 528, 717, 1097
BstNSI RCATGY 1 cut(s) 768
BstSCI CCNGG 4 cut(s) 526, 549, 715, 1095
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 574
BstUI CGCG 5 cut(s) 72, 74, 100, 282, 478
BstV1I GCAGC 4 cut(s) 162, 179, 586, 589
BstV2I GAAGAC 2 cut(s) 17, 172
BstX2I RGATCY 3 cut(s) 204, 241, 1099
BstXI CCANNNNNNTGG 1 cut(s) 335
BstYI RGATCY 3 cut(s) 204, 241, 1099
BsuI GTATCC 1 cut(s) 1085
BsuRI GGCC 3 cut(s) 5, 666, 1078
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 5 cut(s) 223, 560, 667, 726, 895
BtsI GCAGTG 2 cut(s) 54, 452
BtsIMutI CAGTG 4 cut(s) 54, 452, 832, 984
Cac8I GCNNGC 1 cut(s) 480
CfoI GCGC 3 cut(s) 74, 459, 607
Cfr13I GGNCC 2 cut(s) 325, 1077
CseI GACGC 3 cut(s) 89, 484, 1018
Csp6I GTAC 2 cut(s) 836, 1069
CviAII CATG 4 cut(s) 307, 765, 931, 986
CviQI GTAC 2 cut(s) 836, 1069
DdeI CTNAG 4 cut(s) 172, 360, 505, 921
DpnI GATC 6 cut(s) 112, 206, 243, 266, 729, 1101
DpnII GATC 6 cut(s) 110, 204, 241, 264, 727, 1099
DraI TTTAAA 1 cut(s) 912
DrdI GACNNNNNNGTC 2 cut(s) 41, 197
DriI GACNNNNNGTC 1 cut(s) 99
DseDI GACNNNNNNGTC 2 cut(s) 41, 197
EaeI YGGCCR 1 cut(s) 664
Eam1104I CTCTTC 2 cut(s) 683, 789
Eam1105I GACNNNNNGTC 1 cut(s) 99
EarI CTCTTC 2 cut(s) 683, 789
EciI GGCGGA 2 cut(s) 103, 479
Eco31I GGTCTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 325
Eco57I CTGAAG 2 cut(s) 209, 222
Eco88I CYCGRG 1 cut(s) 1079
EcoRII CCWGG 3 cut(s) 526, 715, 1095
FaeI CATG 4 cut(s) 310, 768, 934, 989
FaqI GGGAC 2 cut(s) 203, 759
FatI CATG 4 cut(s) 306, 764, 930, 985
FauI CCCGC 1 cut(s) 405
FauNDI CATATG 1 cut(s) 578
FbaI TGATCA 1 cut(s) 727
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 8 cut(s) 16, 19, 151, 168, 430, 600, 603, 1123
FokI GGATG 5 cut(s) 230, 547, 674, 733, 902
Fsp4HI GCNGC 8 cut(s) 16, 19, 151, 168, 430, 600, 603, 1123
FspBI CTAG 1 cut(s) 590
FspI TGCGCA 1 cut(s) 458
GlaI GCGC 3 cut(s) 73, 458, 606
GluI GCNGC 8 cut(s) 16, 19, 151, 168, 430, 600, 603, 1123
GsaI CCCAGC 1 cut(s) 744
HaeIII GGCC 3 cut(s) 5, 666, 1078
HapII CCGG 4 cut(s) 202, 215, 551, 804
HgaI GACGC 3 cut(s) 89, 484, 1018
HhaI GCGC 3 cut(s) 74, 459, 607
Hin1I GRCGYC 2 cut(s) 95, 195
Hin1II CATG 4 cut(s) 310, 768, 934, 989
Hin6I GCGC 3 cut(s) 72, 457, 605
HinP1I GCGC 3 cut(s) 72, 457, 605
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 3 cut(s) 63, 502, 914
HinfI GANTC 7 cut(s) 35, 290, 523, 940, 973, 982, 1082
HpaII CCGG 4 cut(s) 202, 215, 551, 804
Hpy166II GTNNAC 2 cut(s) 34, 104
Hpy188I TCNGA 7 cut(s) 175, 241, 259, 301, 418, 617, 1091
Hpy188III TCNNGA 7 cut(s) 91, 131, 202, 227, 590, 920, 944
Hpy8I GTNNAC 2 cut(s) 34, 104
Hpy99I CGWCG 5 cut(s) 35, 97, 100, 197, 200
HpyAV CCTTC 3 cut(s) 233, 246, 1096
HpyCH4IV ACGT 5 cut(s) 49, 95, 195, 384, 595
HpyCH4V TGCA 6 cut(s) 167, 276, 445, 637, 764, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 122, 730
HpyF3I CTNAG 4 cut(s) 172, 360, 505, 921
HpySE526I ACGT 5 cut(s) 49, 95, 195, 384, 595
Hsp92I GRCGYC 2 cut(s) 95, 195
Hsp92II CATG 4 cut(s) 310, 768, 934, 989
HspAI GCGC 3 cut(s) 72, 457, 605
Kpn2I TCCGGA 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 6 cut(s) 110, 204, 241, 264, 727, 1099
LmnI GCTCC 2 cut(s) 845, 1119
Lsp1109I GCAGC 4 cut(s) 162, 179, 586, 589
LweI GCATC 3 cut(s) 208, 566, 711
MaeI CTAG 1 cut(s) 590
MaeII ACGT 5 cut(s) 49, 95, 195, 384, 595
MaeIII GTNAC 3 cut(s) 338, 366, 979
MalI GATC 6 cut(s) 112, 206, 243, 266, 729, 1101
MbiI CCGCTC 2 cut(s) 482, 1122
MboI GATC 6 cut(s) 110, 204, 241, 264, 727, 1099
MboII GAAGA 7 cut(s) 17, 172, 441, 524, 527, 700, 806
MflI RGATCY 3 cut(s) 204, 241, 1099
MhlI GDGCHC 1 cut(s) 574
MlsI TGGCCA 1 cut(s) 666
MluCI AATT 5 cut(s) 330, 406, 412, 1013, 1027
MluNI TGGCCA 1 cut(s) 666
MlyI GAGTC 3 cut(s) 29, 976, 1091
MmeI TCCRAC 1 cut(s) 823
Mox20I TGGCCA 1 cut(s) 666
MroI TCCGGA 1 cut(s) 201
MroXI GAANNNNTTC 1 cut(s) 522
MscI TGGCCA 1 cut(s) 666
MseI TTAA 2 cut(s) 911, 1135
MslI CAYNNNNRTG 1 cut(s) 577
Msp20I TGGCCA 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 4 cut(s) 202, 215, 551, 804
MspR9I CCNGG 4 cut(s) 528, 551, 717, 1097
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 3 cut(s) 528, 717, 1097
MvnI CGCG 5 cut(s) 72, 74, 100, 282, 478
MwoI GCNNNNNNNGC 3 cut(s) 71, 122, 730
NciI CCSGG 1 cut(s) 551
NdeI CATATG 1 cut(s) 578
NdeII GATC 6 cut(s) 110, 204, 241, 264, 727, 1099
NlaIII CATG 4 cut(s) 310, 768, 934, 989
NlaIV GGNNCC 1 cut(s) 573
NmuCI GTSAC 1 cut(s) 979
NsbI TGCGCA 1 cut(s) 458
NspI RCATGY 1 cut(s) 768
PctI GAATGC 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 4 cut(s) 290, 523, 940, 973
PflFI GACNNNGTC 2 cut(s) 194, 197
PkrI GCNGC 8 cut(s) 17, 20, 152, 169, 431, 601, 604, 1124
PleI GAGTC 3 cut(s) 29, 976, 1090
PpsI GAGTC 3 cut(s) 29, 976, 1090
Psp6I CCWGG 3 cut(s) 526, 715, 1095
PspFI CCCAGC 1 cut(s) 740
PspGI CCWGG 3 cut(s) 526, 715, 1095
PspN4I GGNNCC 1 cut(s) 573
PspPI GGNCC 2 cut(s) 325, 1077
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 3 cut(s) 204, 241, 1099
PsyI GACNNNGTC 2 cut(s) 194, 197
RsaI GTAC 2 cut(s) 837, 1070
RsaNI GTAC 2 cut(s) 836, 1069
RseI CAYNNNNRTG 1 cut(s) 577
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 911, 1135
SatI GCNGC 8 cut(s) 16, 19, 151, 168, 430, 600, 603, 1123
Sau3AI GATC 6 cut(s) 110, 204, 241, 264, 727, 1099
Sau96I GGNCC 2 cut(s) 325, 1077
SchI GAGTC 3 cut(s) 29, 976, 1091
ScrFI CCNGG 4 cut(s) 528, 551, 717, 1097
SduI GDGCHC 1 cut(s) 574
SfaNI GCATC 3 cut(s) 208, 566, 711
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 577
Sse9I AATT 5 cut(s) 330, 406, 412, 1013, 1027
SsiI CCGC 9 cut(s) 15, 18, 114, 282, 398, 429, 464, 482, 1122
SspMI CTAG 1 cut(s) 590
StyD4I CCNGG 4 cut(s) 526, 549, 715, 1095
TaiI ACGT 5 cut(s) 52, 98, 198, 387, 598
TaqI TCGA 3 cut(s) 33, 109, 1060
TasI AATT 5 cut(s) 330, 406, 412, 1013, 1027
TauI GCSGC 4 cut(s) 18, 21, 432, 1125
TfiI GAWTC 4 cut(s) 290, 523, 940, 973
Tru1I TTAA 2 cut(s) 911, 1135
Tru9I TTAA 2 cut(s) 911, 1135
TscAI CASTG 4 cut(s) 61, 459, 832, 984
TseFI GTSAC 1 cut(s) 979
TseI GCWGC 4 cut(s) 150, 167, 599, 602
Tsp45I GTSAC 1 cut(s) 979
TspDTI ATGAA 3 cut(s) 295, 656, 919
TspGWI ACGGA 1 cut(s) 1018
TspRI CASTG 4 cut(s) 61, 459, 832, 984
Tth111I GACNNNGTC 2 cut(s) 194, 197
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 2 cut(s) 406, 412
XbaI TCTAGA 1 cut(s) 589
XceI RCATGY 1 cut(s) 768
XmiI GTMKAC 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 1 cut(s) 590
ZraI GACGTC 2 cut(s) 96, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.