Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Forward (+)

88026603 .. 88028605

Gene Structure 2003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCCTTCGTCCACTCCTTCACCTTCCCTATCACCGCCAAACCTTTTCGCGCCTTCCCCAACCCCCGAATGCCGTCGTTTCCCTCACGCTCCACCCTCCCTTTTCACAACCTCCTCACTCGCCGCCACTCCGATGTCTTCTTCACCTGGGACGACGTCGTCCGGATATCCCAACCGGAATCCCTCCCCGACGACGACCCTTCCGACCTCAAATGCTACTCCGACAAGATCAAATTCTGCAACCGCGGCCACGAAATGCAATCGGAGTTCCGCTCCTTCGTAATTGAGGACCAAATCGTTGGGTACATTCACAACGGATTTGCAGAGAATTTACGGAGTTACCAGGACGTTTTTACTTTTCCACCAGGCCAAGTAACTCTGCATTCTTCGCTGAGCTCACCCGAGGATAGAACAAGAGCTGTTGGGGATGTGGTAAAGAGCTTAGGGGAAGAATTGATTCCAGGTATAAGAAATGAGTTTTACCCGGTGACGTCGGCTTTTGGGGCTCCAATATATTTCTCTCTTGAACGTGCAGCCGCTCCTTACTTTGGAATAAAGGTTTATGGAGTGCATATGTGTGGCTATGTTGAGAAACATGGGAAGGAATTTCTATGGATAGGGAAGAGAAGTCAACAGAAACAGACCTATCCAGGGATGCTTGATCATCTTGTTGCTGGTGGACTGCCTCATGGGGTAGCTTGTGGGGACAATGTTGTGAAGGAATGTGAAGAGGAAGCCGGAATACCAAGCTCCATTTCCAAGGGTGCTGTACCAGTTGGTGCTGTTTCTTATATGGACATTGATGGGTATAGTTACAAAAGGGATGTCTTGTTTTGCTATGATTTAAAACTCCCTGAGAGCTTCATGCCTAAGAATCAAGGTGACACCCTCGTCTATTGTAGTTGTATAATATGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

306

Amino Acids

34.41

Weight (kDa)

5.93

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4743	PF15916	75 - 186	1.9e-34	Domain of unknown function (DUF4743)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	158, 890
AatII	GACGTC	2 cut(s)	159, 494
AccBSI	CCGCTC	2 cut(s)	273, 539
AccII	CGCG	2 cut(s)	51, 246
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	6 cut(s)	36, 124, 244, 246, 271, 537
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	3 cut(s)	233, 328, 605
AcyI	GRCGYC	2 cut(s)	156, 491
AfaI	GTAC	2 cut(s)	305, 771
AfiI	CCNNNNNNNGG	2 cut(s)	548, 651
AgsI	TTSAA	1 cut(s)	527
AjnI	CCWGG	5 cut(s)	146, 342, 364, 460, 649
AjuI	GAANNNNNNNTTGG	2 cut(s)	739, 771
AluBI	AGCT	6 cut(s)	396, 419, 441, 698, 750, 861
AluI	AGCT	6 cut(s)	396, 419, 441, 698, 750, 861
Alw21I	GWGCWC	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	3 cut(s)	3, 247, 367
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	3 cut(s)	233, 328, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	810, 842
Asp700I	GAANNNNTTC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	6 cut(s)	13, 25, 136, 390, 499, 893
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	289
BanII	GRGCYC	2 cut(s)	398, 508
BarI	GAAGNNNNNNTAC	2 cut(s)	726, 758
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	1 cut(s)	797
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	5 cut(s)	148, 344, 366, 462, 651
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	485
BisI	GCNGC	4 cut(s)	124, 247, 534, 537
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	4 cut(s)	125, 248, 535, 538
Bme1390I	CCNGG	6 cut(s)	148, 344, 366, 462, 485, 651
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	6 cut(s)	148, 344, 366, 462, 485, 651
BmsI	GCATC	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
Bpu10I	CCTNAGC	1 cut(s)	442
Bpu1102I	GCTNAGC	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	485
BsaHI	GRCGYC	2 cut(s)	156, 491
BsaJI	CCNNGG	5 cut(s)	147, 244, 402, 650, 759
BsaWI	WCCGGW	2 cut(s)	162, 175
Bsc4I	CCNNNNNNNGG	2 cut(s)	548, 651
Bse1I	ACTGG	1 cut(s)	773
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	5 cut(s)	148, 344, 366, 462, 651
BseDI	CCNNGG	5 cut(s)	147, 244, 402, 650, 759
BseGI	GGATG	3 cut(s)	433, 660, 829
BseLI	CCNNNNNNNGG	2 cut(s)	548, 651
BseMII	CTCAG	2 cut(s)	383, 846
BseNI	ACTGG	1 cut(s)	773
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	2 cut(s)	51, 246
BshFI	GGCC	3 cut(s)	5, 249, 369
BsiHKAI	GWGCWC	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	4 cut(s)	163, 176, 485, 738
BslFI	GGGAC	2 cut(s)	164, 719
BslI	CCNNNNNNNGG	2 cut(s)	548, 651
BsmFI	GGGAC	2 cut(s)	164, 719
BsmI	GAATGC	2 cut(s)	75, 382
BsnI	GGCC	3 cut(s)	5, 249, 369
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	398, 508
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	228, 661
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	6 cut(s)	36, 124, 244, 246, 271, 537
BspANI	GGCC	3 cut(s)	5, 249, 369
BspCNI	CTCAG	2 cut(s)	384, 847
BspEI	TCCGGA	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	51, 246
BspLI	GGNNCC	1 cut(s)	507
BsrBI	CCGCTC	2 cut(s)	273, 539
BsrI	ACTGG	1 cut(s)	773
BssECI	CCNNGG	5 cut(s)	147, 244, 402, 650, 759
BssMI	GATC	2 cut(s)	228, 661
BssNI	GRCGYC	2 cut(s)	156, 491
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	5 cut(s)	148, 344, 366, 462, 651
Bst6I	CTCTTC	2 cut(s)	617, 723
BstACI	GRCGYC	2 cut(s)	156, 491
BstDEI	CTNAG	4 cut(s)	392, 442, 855, 870
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	3 cut(s)	433, 660, 829
BstFNI	CGCG	2 cut(s)	51, 246
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	231, 664
BstMBI	GATC	2 cut(s)	228, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 388, 503
BstNI	CCWGG	5 cut(s)	148, 344, 366, 462, 651
BstSCI	CCNGG	6 cut(s)	146, 342, 364, 460, 483, 649
BstUI	CGCG	2 cut(s)	51, 246
BstV1I	GCAGC	1 cut(s)	545
BstV2I	GAAGAC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	299
BsuRI	GGCC	3 cut(s)	5, 249, 369
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	433, 660, 829
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	289
Cfr42I	CCGCGG	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	304, 770
CviAII	CATG	3 cut(s)	596, 689, 865
CviQI	GTAC	2 cut(s)	304, 770
DdeI	CTNAG	4 cut(s)	392, 442, 855, 870
DpnI	GATC	2 cut(s)	230, 663
DpnII	GATC	2 cut(s)	228, 661
DraI	TTTAAA	1 cut(s)	846
DrdI	GACNNNNNNGTC	2 cut(s)	158, 890
DseDI	GACNNNNNNGTC	2 cut(s)	158, 890
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	617, 723
EarI	CTCTTC	2 cut(s)	617, 723
Ecl136II	GAGCTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	759
Eco24I	GRGCYC	2 cut(s)	398, 508
Eco32I	GATATC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	396
EcoRII	CCWGG	5 cut(s)	146, 342, 364, 460, 649
EcoRV	GATATC	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	759
EcoT38I	GRGCYC	2 cut(s)	398, 508
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	3 cut(s)	599, 692, 868
FaqI	GGGAC	2 cut(s)	164, 719
FatI	CATG	3 cut(s)	595, 688, 864
FauNDI	CATATG	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	661
Fnu4HI	GCNGC	4 cut(s)	124, 247, 534, 537
FokI	GGATG	3 cut(s)	440, 667, 836
FriOI	GRGCYC	2 cut(s)	398, 508
Fsp4HI	GCNGC	4 cut(s)	124, 247, 534, 537
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	4 cut(s)	124, 247, 534, 537
HaeIII	GGCC	3 cut(s)	5, 249, 369
HapII	CCGG	4 cut(s)	163, 176, 485, 738
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	2 cut(s)	156, 491
Hin1II	CATG	3 cut(s)	599, 692, 868
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	632
HindII	GTYRAC	1 cut(s)	632
HinfI	GANTC	3 cut(s)	179, 457, 874
HpaII	CCGG	4 cut(s)	163, 176, 485, 738
HphI	GGTGA	6 cut(s)	13, 25, 136, 390, 499, 893
Hpy166II	GTNNAC	3 cut(s)	13, 632, 680
Hpy188I	TCNGA	4 cut(s)	133, 205, 223, 265
Hpy188III	TCNNGA	2 cut(s)	163, 524
Hpy8I	GTNNAC	3 cut(s)	13, 632, 680
Hpy99I	CGWCG	6 cut(s)	79, 158, 161, 194, 197, 496
HpyAV	CCTTC	8 cut(s)	16, 28, 34, 64, 210, 286, 595, 712
HpyCH4IV	ACGT	4 cut(s)	156, 348, 491, 529
HpyCH4V	TGCA	6 cut(s)	240, 259, 323, 382, 533, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 388, 503
HpyF3I	CTNAG	4 cut(s)	392, 442, 855, 870
HpySE526I	ACGT	4 cut(s)	156, 348, 491, 529
Hsp92I	GRCGYC	2 cut(s)	156, 491
Hsp92II	CATG	3 cut(s)	599, 692, 868
HspAI	GCGC	1 cut(s)	51
Kpn2I	TCCGGA	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	661
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	228, 661
LmnI	GCTCC	5 cut(s)	95, 278, 511, 544, 755
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	1 cut(s)	645
MaeII	ACGT	4 cut(s)	156, 348, 491, 529
MaeIII	GTNAC	5 cut(s)	338, 373, 487, 812, 881
MalI	GATC	2 cut(s)	230, 663
MbiI	CCGCTC	2 cut(s)	273, 539
MboI	GATC	2 cut(s)	228, 661
MboII	GAAGA	6 cut(s)	130, 133, 378, 461, 634, 740
MhlI	GDGCHC	2 cut(s)	398, 508
MluCI	AATT	5 cut(s)	233, 282, 328, 452, 605
MmeI	TCCRAC	2 cut(s)	228, 246
MroI	TCCGGA	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	2 cut(s)	845, 919
MslI	CAYNNNNRTG	2 cut(s)	132, 576
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	4 cut(s)	163, 176, 485, 738
MspR9I	CCNGG	6 cut(s)	148, 344, 366, 462, 485, 651
Mva1269I	GAATGC	2 cut(s)	75, 382
MvaI	CCWGG	5 cut(s)	148, 344, 366, 462, 651
MvnI	CGCG	2 cut(s)	51, 246
MwoI	GCNNNNNNNGC	3 cut(s)	246, 388, 503
NciI	CCSGG	1 cut(s)	485
NdeI	CATATG	1 cut(s)	573
NdeII	GATC	2 cut(s)	228, 661
NlaIII	CATG	3 cut(s)	599, 692, 868
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	2 cut(s)	487, 881
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	2 cut(s)	75, 382
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	3 cut(s)	179, 457, 874
PflFI	GACNNNGTC	2 cut(s)	155, 158
PkrI	GCNGC	4 cut(s)	125, 248, 535, 538
Psp124BI	GAGCTC	1 cut(s)	398
Psp6I	CCWGG	5 cut(s)	146, 342, 364, 460, 649
PspGI	CCWGG	5 cut(s)	146, 342, 364, 460, 649
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	289
PsyI	GACNNNGTC	2 cut(s)	155, 158
RsaI	GTAC	2 cut(s)	305, 771
RsaNI	GTAC	2 cut(s)	304, 770
RseI	CAYNNNNRTG	2 cut(s)	132, 576
SacI	GAGCTC	1 cut(s)	398
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	845, 919
SatI	GCNGC	4 cut(s)	124, 247, 534, 537
Sau3AI	GATC	2 cut(s)	228, 661
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	6 cut(s)	148, 344, 366, 462, 485, 651
SduI	GDGCHC	2 cut(s)	398, 508
SfaNI	GCATC	1 cut(s)	645
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	2 cut(s)	132, 576
Sse9I	AATT	5 cut(s)	233, 282, 328, 452, 605
SsiI	CCGC	6 cut(s)	36, 124, 244, 246, 271, 537
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	6 cut(s)	146, 342, 364, 460, 483, 649
StyI	CCWWGG	1 cut(s)	759
TaiI	ACGT	4 cut(s)	159, 351, 494, 532
TasI	AATT	5 cut(s)	233, 282, 328, 452, 605
TauI	GCSGC	3 cut(s)	126, 249, 539
TfiI	GAWTC	3 cut(s)	179, 457, 874
Tru1I	TTAA	2 cut(s)	845, 919
Tru9I	TTAA	2 cut(s)	845, 919
TseFI	GTSAC	2 cut(s)	487, 881
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	2 cut(s)	487, 881
TspDTI	ATGAA	1 cut(s)	853
TspGWI	ACGGA	2 cut(s)	330, 349
Tth111I	GACNNNGTC	2 cut(s)	155, 158
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	3 cut(s)	233, 328, 605
XmnI	GAANNNNTTC	1 cut(s)	456
ZraI	GACGTC	2 cut(s)	157, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.