Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Reverse (-)

2832621 .. 2836521

Gene Structure 3901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCCTTCGTCCACTCCTCTTCTTTCACCTCCTCTCCTTTTCGCGCTTTCCCCAACCTCAAAACGCCGTCGTTTCTCTCACGCTCCACCTTCCCTCTCCACAACCTCCTCACTCGCCGCCGCTCCTCACTCACAGCCTCCGATGTCTCCTTCACCTGGGACGACGCCTTCTGGATTTCCCAGCCGGAAGCCCTCCCCGACGACCCTTCCGATCTCAGAGGCTACTCCGACAGGATCAAAGCCTGCAACCGCGGAGTCGAAATGCAATCGGAGTTTCGTCCGTTCGTGATTGAGGACCAAATCGTCGGTTACATTCACAACCGGTTTGCTGAGAATTTACGGAGTTACCGTGACGTTTTTACTTTTCTACCGGGGAAAGTAACTCTGCATTCTTCGCTGAGCTCAGCGGAGGATAGGACTAGAGCTGTTGGGGATGTAATTAAGAGCTTAGGGGAAGAATCGATTCCAGGTATAAGAAATGAGTTGTACCCGGTGACTTCGGCTTTTGGGGCTCCGGTATATTTCTCTCTTGAACGTGCAGCTGCTCCTTACTTTGGAATAAAGGCTTATGGAATTCATATGTGTGGCTATGTTGAGAAAGACGGGAAGAAATTTCTATGGTTAGCAAAGAGAAGTCAACAGAAACCTACCTATCCTGGGATGCTTGATCATCTTGTAGCTGGTGGACTGCCTCATGGGGTAGCGTGTGGGGACAATGTTGTAAAGGAATGTGAAGAGGAAGCTGGAATACCAAGCTCCATTTCTAGGGGTGCTGTACCAGTTGGTGCTGTTTCATATATGGACATTAATGGGTATAGCTACAAAAGGGATGTCTTGTTTTGCTATGATTTAAAACTCCCTGAGAGTTTCATGCCTGAGAATCAAGATGGAGAGGTGGAGAGCTTCAAGTTGATCCCTGTGACTCATGTTGCAAACATCATCCGGAGGACACAGTTTTTCAAGCCAAATTGTTCACTTGTCATCATTGATTTCCTGTTTCGACATGGGTATATTAGTCCCGAATGCTTCGGATATCTGGATTTATTACAAAGTTTGAGAAGCGGGAGTTGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

359

Amino Acids

40.09

Weight (kDa)

6.51

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4743	PF15916	77 - 189	1.6e-36	Domain of unknown function (DUF4743)
NUDIX	PF00293	200 - 310	9.8e-07	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	2 cut(s)	45, 252
AccIII	TCCGGA	1 cut(s)	942
AciI	CCGC	6 cut(s)	118, 121, 250, 252, 407, 1062
AclWI	GGATC	2 cut(s)	242, 907
AcsI	RAATTY	3 cut(s)	334, 573, 611
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	488, 777
AfiI	CCNNNNNNNGG	4 cut(s)	156, 554, 657, 765
AgeI	ACCGGT	1 cut(s)	321
AgsI	TTSAA	3 cut(s)	533, 907, 961
AjnI	CCWGG	3 cut(s)	155, 466, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	745, 777
AluBI	AGCT	9 cut(s)	402, 425, 447, 542, 680, 743, 756, 819, 903
AluI	AGCT	9 cut(s)	402, 425, 447, 542, 680, 743, 756, 819, 903
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	2 cut(s)	242, 907
Aor13HI	TCCGGA	1 cut(s)	942
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	539, 542
ApoI	RAATTY	3 cut(s)	334, 573, 611
ArsI	GACNNNNNNTTYG	2 cut(s)	816, 848
AseI	ATTAAT	1 cut(s)	807
AsiGI	ACCGGT	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	2 cut(s)	372, 491
AsuHPI	GGTGA	3 cut(s)	19, 145, 505
AvaII	GGWCC	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	404, 514
BarI	GAAGNNNNNNTAC	2 cut(s)	732, 764
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	529, 551
BccI	CCATC	1 cut(s)	881
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	3 cut(s)	157, 468, 657
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	2 cut(s)	372, 491
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	2 cut(s)	420, 765
BisI	GCNGC	4 cut(s)	118, 121, 540, 543
BlpI	GCTNAGC	2 cut(s)	398, 403
BlsI	GCNGC	4 cut(s)	119, 122, 541, 544
Bme1390I	CCNGG	5 cut(s)	157, 372, 468, 491, 657
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	5 cut(s)	157, 372, 468, 491, 657
BmsI	GCATC	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	448
Bpu1102I	GCTNAGC	2 cut(s)	398, 403
BpuMI	CCSGG	2 cut(s)	372, 491
Bsa29I	ATCGAT	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	4 cut(s)	156, 250, 371, 656
BsaWI	WCCGGW	3 cut(s)	321, 514, 942
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 334, 364
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 554, 657, 765
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	779
BseAI	TCCGGA	1 cut(s)	942
BseBI	CCWGG	3 cut(s)	157, 468, 657
BseCI	ATCGAT	1 cut(s)	461
BseDI	CCNNGG	4 cut(s)	156, 250, 371, 656
BseGI	GGATG	4 cut(s)	439, 666, 835, 939
BseLI	CCNNNNNNNGG	4 cut(s)	156, 554, 657, 765
BseMII	CTCAG	6 cut(s)	229, 321, 389, 417, 852, 867
BseNI	ACTGG	1 cut(s)	779
BseRI	GAGGAG	4 cut(s)	7, 22, 98, 115
BseXI	GCAGC	2 cut(s)	529, 551
BseYI	CCCAGC	1 cut(s)	180
BsgI	GTGCAG	1 cut(s)	558
Bsh1236I	CGCG	2 cut(s)	45, 252
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	321
BshVI	ATCGAT	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	404
BsiSI	CCGG	6 cut(s)	185, 322, 371, 491, 515, 943
BslFI	GGGAC	3 cut(s)	173, 725, 1002
BslI	CCNNNNNNNGG	4 cut(s)	156, 554, 657, 765
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	3 cut(s)	173, 725, 1002
BsmI	GAATGC	2 cut(s)	388, 1028
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	404, 514
Bsp13I	TCCGGA	1 cut(s)	942
Bsp143I	GATC	4 cut(s)	211, 234, 667, 912
Bsp1720I	GCTNAGC	2 cut(s)	398, 403
BspACI	CCGC	6 cut(s)	118, 121, 250, 252, 407, 1062
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	6 cut(s)	228, 322, 390, 416, 853, 868
BspDI	ATCGAT	1 cut(s)	461
BspEI	TCCGGA	1 cut(s)	942
BspFNI	CGCG	2 cut(s)	45, 252
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	2 cut(s)	242, 907
BsrBI	CCGCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	779
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	4 cut(s)	156, 250, 371, 656
BssMI	GATC	4 cut(s)	211, 234, 667, 912
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	3 cut(s)	157, 468, 657
Bst4CI	ACNGT	2 cut(s)	350, 954
Bst6I	CTCTTC	2 cut(s)	25, 729
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	7 cut(s)	215, 330, 398, 403, 448, 861, 876
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	4 cut(s)	439, 666, 835, 939
BstFNI	CGCG	2 cut(s)	45, 252
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	4 cut(s)	214, 237, 670, 915
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	4 cut(s)	211, 234, 667, 912
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 509
BstNI	CCWGG	3 cut(s)	157, 468, 657
BstSCI	CCNGG	5 cut(s)	155, 370, 466, 489, 655
BstUI	CGCG	2 cut(s)	45, 252
BstV1I	GCAGC	2 cut(s)	529, 551
Bsu15I	ATCGAT	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	461
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	4 cut(s)	439, 666, 835, 939
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	295
Cfr42I	CCGCGG	1 cut(s)	253
ClaI	ATCGAT	1 cut(s)	461
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	487, 776
CspAI	ACCGGT	1 cut(s)	321
CviAII	CATG	4 cut(s)	695, 871, 926, 1004
CviQI	GTAC	2 cut(s)	487, 776
DdeI	CTNAG	7 cut(s)	215, 330, 398, 403, 448, 861, 876
DpnI	GATC	4 cut(s)	213, 236, 669, 914
DpnII	GATC	4 cut(s)	211, 234, 667, 912
DraI	TTTAAA	1 cut(s)	852
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	25, 729
EarI	CTCTTC	2 cut(s)	25, 729
Ecl136II	GAGCTC	1 cut(s)	402
Eco24I	GRGCYC	2 cut(s)	404, 514
Eco32I	GATATC	1 cut(s)	1034
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	402
EcoRI	GAATTC	1 cut(s)	573
EcoRII	CCWGG	3 cut(s)	155, 466, 655
EcoRV	GATATC	1 cut(s)	1034
EcoT38I	GRGCYC	2 cut(s)	404, 514
FaeI	CATG	4 cut(s)	698, 874, 929, 1007
FaqI	GGGAC	3 cut(s)	173, 725, 1002
FatI	CATG	4 cut(s)	694, 870, 925, 1003
FauI	CCCGC	1 cut(s)	1055
FauNDI	CATATG	1 cut(s)	579
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	4 cut(s)	118, 121, 540, 543
FokI	GGATG	4 cut(s)	446, 673, 842, 926
FriOI	GRGCYC	2 cut(s)	404, 514
Fsp4HI	GCNGC	4 cut(s)	118, 121, 540, 543
FspBI	CTAG	2 cut(s)	420, 765
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	4 cut(s)	118, 121, 540, 543
GsaI	CCCAGC	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	6 cut(s)	185, 322, 371, 491, 515, 943
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	4 cut(s)	698, 874, 929, 1007
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	638
HindII	GTYRAC	1 cut(s)	638
HinfI	GANTC	5 cut(s)	255, 458, 463, 880, 922
HpaII	CCGG	6 cut(s)	185, 322, 371, 491, 515, 943
HphI	GGTGA	3 cut(s)	19, 145, 505
Hpy166II	GTNNAC	4 cut(s)	13, 638, 686, 974
Hpy188I	TCNGA	6 cut(s)	142, 211, 218, 229, 271, 1031
Hpy188III	TCNNGA	7 cut(s)	172, 286, 530, 884, 943, 1019, 1037
Hpy8I	GTNNAC	4 cut(s)	13, 638, 686, 974
Hpy99I	CGWCG	4 cut(s)	73, 167, 203, 308
HpyAV	CCTTC	5 cut(s)	16, 100, 160, 178, 216
HpyCH4III	ACNGT	2 cut(s)	350, 954
HpyCH4IV	ACGT	2 cut(s)	354, 535
HpyCH4V	TGCA	5 cut(s)	246, 265, 388, 539, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 509
HpyF3I	CTNAG	7 cut(s)	215, 330, 398, 403, 448, 861, 876
HpySE526I	ACGT	2 cut(s)	354, 535
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	4 cut(s)	698, 874, 929, 1007
HspAI	GCGC	1 cut(s)	45
Kpn2I	TCCGGA	1 cut(s)	942
Ksp22I	TGATCA	1 cut(s)	667
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	211, 234, 667, 912
LmnI	GCTCC	5 cut(s)	89, 128, 517, 550, 761
Lsp1109I	GCAGC	2 cut(s)	529, 551
LweI	GCATC	1 cut(s)	651
MaeI	CTAG	2 cut(s)	420, 765
MaeII	ACGT	2 cut(s)	354, 535
MaeIII	GTNAC	6 cut(s)	308, 344, 350, 379, 493, 919
MalI	GATC	4 cut(s)	213, 236, 669, 914
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	4 cut(s)	211, 234, 667, 912
MboII	GAAGA	5 cut(s)	12, 384, 467, 619, 746
MhlI	GDGCHC	2 cut(s)	404, 514
MluCI	AATT	5 cut(s)	334, 438, 573, 611, 967
MlyI	GAGTC	2 cut(s)	264, 916
MmeI	TCCRAC	1 cut(s)	252
MroI	TCCGGA	1 cut(s)	942
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	3 cut(s)	441, 807, 851
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	3 cut(s)	252, 407, 542
MspI	CCGG	6 cut(s)	185, 322, 371, 491, 515, 943
MspR9I	CCNGG	5 cut(s)	157, 372, 468, 491, 657
Mva1269I	GAATGC	2 cut(s)	388, 1028
MvaI	CCWGG	3 cut(s)	157, 468, 657
MvnI	CGCG	2 cut(s)	45, 252
MwoI	GCNNNNNNNGC	2 cut(s)	394, 509
NciI	CCSGG	2 cut(s)	372, 491
NdeI	CATATG	1 cut(s)	579
NdeII	GATC	4 cut(s)	211, 234, 667, 912
NlaIII	CATG	4 cut(s)	698, 874, 929, 1007
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	3 cut(s)	350, 493, 919
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 346
PctI	GAATGC	2 cut(s)	388, 1028
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	458, 463, 880
PinAI	ACCGGT	1 cut(s)	321
PkrI	GCNGC	4 cut(s)	119, 122, 541, 544
PleI	GAGTC	2 cut(s)	263, 916
PpsI	GAGTC	2 cut(s)	263, 916
PshBI	ATTAAT	1 cut(s)	807
Psp124BI	GAGCTC	1 cut(s)	404
Psp6I	CCWGG	3 cut(s)	155, 466, 655
PspFI	CCCAGC	1 cut(s)	180
PspGI	CCWGG	3 cut(s)	155, 466, 655
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	2 cut(s)	488, 777
RsaNI	GTAC	2 cut(s)	487, 776
RseI	CAYNNNNRTG	1 cut(s)	582
SacI	GAGCTC	1 cut(s)	404
SacII	CCGCGG	1 cut(s)	253
SaqAI	TTAA	3 cut(s)	441, 807, 851
SatI	GCNGC	4 cut(s)	118, 121, 540, 543
Sau3AI	GATC	4 cut(s)	211, 234, 667, 912
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	2 cut(s)	264, 916
ScrFI	CCNGG	5 cut(s)	157, 372, 468, 491, 657
SduI	GDGCHC	2 cut(s)	404, 514
SfaNI	GCATC	1 cut(s)	651
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	582
Sse9I	AATT	5 cut(s)	334, 438, 573, 611, 967
SsiI	CCGC	6 cut(s)	118, 121, 250, 252, 407, 1062
SspMI	CTAG	2 cut(s)	420, 765
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	5 cut(s)	155, 370, 466, 489, 655
TaaI	ACNGT	2 cut(s)	350, 954
TaiI	ACGT	2 cut(s)	357, 538
TaqI	TCGA	3 cut(s)	258, 461, 1000
TasI	AATT	5 cut(s)	334, 438, 573, 611, 967
TauI	GCSGC	2 cut(s)	120, 123
TfiI	GAWTC	3 cut(s)	458, 463, 880
Tru1I	TTAA	3 cut(s)	441, 807, 851
Tru9I	TTAA	3 cut(s)	441, 807, 851
TseFI	GTSAC	3 cut(s)	350, 493, 919
TseI	GCWGC	2 cut(s)	539, 542
Tsp45I	GTSAC	3 cut(s)	350, 493, 919
TspDTI	ATGAA	3 cut(s)	566, 783, 859
TspGWI	ACGGA	2 cut(s)	270, 355
VpaK11BI	GGWCC	1 cut(s)	295
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	3 cut(s)	334, 573, 611
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	2 cut(s)	420, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.