Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Forward (+)

6566271 .. 6568806

Gene Structure 2536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCATCTGCATTTTGCTCACTTTGTCCCACTCCCACCTCCTTATTCTCTTCCCACGCGCTTATACCCACTCTACAGTGGCGTTCGAGTTCGAGTTCGAGGTCTCCTCCGCTACATATTTCCCGCGTTTTATCAGTTGAAACTGTTCCTTTAAGCCCATCATTCACCTGGAACGATGTTTTTGAGAACAGTCGAAAAGAATACGTGCCTCAGAACTCCTCCGATCTCACCGGATTTCTCGAGAAAGTCGACCGCTGTAATCGTGGATTAGAGAAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTTATATTCACAAGGGATTTACAAAGTACTTGAGGGACTTTAATGATATCTTTACATTTTCACAATATGGTGGCCATGTAACGCTTAACATGATGCTTGACAAGCCTGAAGAAAGAACCAGAGCAGTTGCACATGTGATCAAAATATTGGGTAACAAAGGAATCATCCCTGGGATACGAAATGAGCTATATCCTGTGAAGCCATCGTTTAATGCTCCTGCCTTTTTTTCTATAGAGCGTGCTGCTGCTCCTTATTTTGGATTGAAGGGTTACGCAATTCATGTGAATGGGTATGTAGAAAGAGATGGACAAAAATTTCTATGGATAGGTAAAAGAAGTCTAGCAAAATCCACTTATCCAGGAAAACTTGATCATCTGGTTGCTGGAGGATTGCCTCACGGGATTAGCGTTTGTGAGAATCTAGTAAAGGAATGCGAAGAGGAAGCTGGGATTTCCAAAGTCTTGGCTGATAGGGCGATTGCGGTCGGTGTTGTTTCCTACATGGATATCGATCGGTACTGTTTCACACGTGATGTGCTGTTTTGTTATGATTTGGAACTCCCTCAAGATTTTGTTCCCACAAATCAAGATGGAGAAGTTGACAGCTTCAGGTTGATTCCAGTCGCTCAAGTTGCTAATGTGGTTCGGAAGACTAGTTTTTTTAAGGACAGTTGTTCCCTGGTCATTATTGACTTCTTGTTTCGGCACGGGTTAATCAGACCAGAGTCACCGGGTTACTTGGATCTATACCGACGCCTGAGGAATGGAGATTGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

365

Amino Acids

41.06

Weight (kDa)

7.1

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4743	PF15916	79 - 195	4.3e-36	Domain of unknown function (DUF4743)
NUDIX	PF00293	199 - 317	1.4e-08	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	2 cut(s)	59, 126
AciI	CCGC	4 cut(s)	110, 124, 253, 800
AclWI	GGATC	1 cut(s)	1068
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	2 cut(s)	447, 910
AcvI	CACGTG	1 cut(s)	848
AcyI	GRCGYC	1 cut(s)	1072
AfaI	GTAC	2 cut(s)	347, 836
AfiI	CCNNNNNNNGG	1 cut(s)	575
AflIII	ACRYGT	2 cut(s)	451, 845
AgsI	TTSAA	2 cut(s)	140, 583
AhlI	ACTAGT	1 cut(s)	971
AjnI	CCWGG	4 cut(s)	167, 487, 676, 996
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	505, 764, 924
AluI	AGCT	3 cut(s)	505, 764, 924
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	1068
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	560, 563
ApoI	RAATTY	1 cut(s)	632
Asp700I	GAANNNNTTC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	1050
AsuHPI	GGTGA	4 cut(s)	157, 220, 293, 1038
AvaI	CYCGRG	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	1076
BalI	TGGCCA	1 cut(s)	393
BbrPI	CACGTG	1 cut(s)	848
BbsI	GAAGAC	1 cut(s)	974
BbvI	GCAGC	2 cut(s)	547, 550
BccI	CCATC	4 cut(s)	166, 529, 617, 902
BciT130I	CCWGG	4 cut(s)	169, 489, 678, 998
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	2 cut(s)	456, 688
BcnI	CCSGG	1 cut(s)	1050
BcoDI	GTCTC	1 cut(s)	108
BcuI	ACTAGT	1 cut(s)	971
BfaI	CTAG	3 cut(s)	659, 740, 972
BfmI	CTRYAG	2 cut(s)	74, 549
BfuI	GTATCC	1 cut(s)	486
BisI	GCNGC	2 cut(s)	561, 564
BlsI	GCNGC	2 cut(s)	562, 565
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	5 cut(s)	169, 489, 678, 998, 1050
BmeT110I	CYCGRG	1 cut(s)	239
BmrFI	CCNGG	5 cut(s)	169, 489, 678, 998, 1050
BmsI	GCATC	2 cut(s)	14, 402
BoxI	GACNNNNGTC	1 cut(s)	1042
BpiI	GAAGAC	1 cut(s)	974
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BpmI	CTGGAG	1 cut(s)	723
BpuEI	CTTGAG	3 cut(s)	370, 867, 930
BpuMI	CCSGG	1 cut(s)	1050
Bsa29I	ATCGAT	1 cut(s)	828
BsaAI	YACGTR	2 cut(s)	205, 848
BsaBI	GATNNNNATC	1 cut(s)	828
BsaHI	GRCGYC	1 cut(s)	1072
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	487, 488, 996
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
Bse1I	ACTGG	1 cut(s)	938
Bse21I	CCTNAGG	1 cut(s)	1076
Bse8I	GATNNNNATC	1 cut(s)	828
BseBI	CCWGG	4 cut(s)	169, 489, 678, 998
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	487, 488, 996
BseGI	GGATG	1 cut(s)	483
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseMII	CTCAG	2 cut(s)	224, 1067
BseNI	ACTGG	1 cut(s)	938
BseRI	GAGGAG	2 cut(s)	96, 208
BseXI	GCAGC	2 cut(s)	547, 550
BseYI	CCCAGC	1 cut(s)	764
Bsh1236I	CGCG	2 cut(s)	59, 126
Bsh1285I	CGRYCG	3 cut(s)	253, 804, 832
BshFI	GGCC	1 cut(s)	393
BshVI	ATCGAT	1 cut(s)	828
BsiEI	CGRYCG	3 cut(s)	253, 804, 832
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	231, 1049
BslFI	GGGAC	2 cut(s)	12, 368
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmAI	GTCTC	1 cut(s)	108
BsmFI	GGGAC	2 cut(s)	12, 368
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	1 cut(s)	393
Bso31I	GGTCTC	1 cut(s)	108
BsoBI	CYCGRG	1 cut(s)	239
Bsp143I	GATC	5 cut(s)	223, 456, 688, 829, 1060
BspACI	CCGC	4 cut(s)	110, 124, 253, 800
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	223, 1068
BspDI	ATCGAT	1 cut(s)	828
BspFNI	CGCG	2 cut(s)	59, 126
BspPI	GGATC	1 cut(s)	1068
BspTNI	GGTCTC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	938
BssECI	CCNNGG	3 cut(s)	487, 488, 996
BssMI	GATC	5 cut(s)	223, 456, 688, 829, 1060
BssNI	GRCGYC	1 cut(s)	1072
Bst2UI	CCWGG	4 cut(s)	169, 489, 678, 998
Bst4CI	ACNGT	5 cut(s)	78, 145, 191, 839, 989
Bst6I	CTCTTC	2 cut(s)	55, 750
BstACI	GRCGYC	1 cut(s)	1072
BstBAI	YACGTR	2 cut(s)	205, 848
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	210, 1076
BstF5I	GGATG	1 cut(s)	483
BstFNI	CGCG	2 cut(s)	59, 126
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	5 cut(s)	226, 459, 691, 832, 1063
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	5 cut(s)	223, 456, 688, 829, 1060
BstMCI	CGRYCG	3 cut(s)	253, 804, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	421, 791, 950
BstNI	CCWGG	4 cut(s)	169, 489, 678, 998
BstNSI	RCATGY	1 cut(s)	455
BstPAI	GACNNNNGTC	1 cut(s)	1042
BstSCI	CCNGG	5 cut(s)	167, 487, 676, 996, 1048
BstSFI	CTRYAG	2 cut(s)	74, 549
BstUI	CGCG	2 cut(s)	59, 126
BstV1I	GCAGC	2 cut(s)	547, 550
BstV2I	GAAGAC	1 cut(s)	974
BstX2I	RGATCY	1 cut(s)	1060
BstXI	CCANNNNNNTGG	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	1060
Bsu15I	ATCGAT	1 cut(s)	828
Bsu36I	CCTNAGG	1 cut(s)	1076
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	393
BsuTUI	ATCGAT	1 cut(s)	828
BtsCI	GGATG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	558
CfoI	GCGC	1 cut(s)	61
ClaI	ATCGAT	1 cut(s)	828
CseI	GACGC	1 cut(s)	1080
Csp6I	GTAC	2 cut(s)	346, 835
CviAII	CATG	5 cut(s)	395, 409, 452, 599, 820
CviJI	RGCY	8 cut(s)	156, 393, 424, 505, 520, 764, 785, 924
CviKI_1	RGCY	8 cut(s)	156, 393, 424, 505, 520, 764, 785, 924
CviQI	GTAC	2 cut(s)	346, 835
DdeI	CTNAG	2 cut(s)	210, 1076
DpnI	GATC	5 cut(s)	225, 458, 690, 831, 1062
DpnII	GATC	5 cut(s)	223, 456, 688, 829, 1060
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	55, 750
EarI	CTCTTC	2 cut(s)	55, 750
Eco31I	GGTCTC	1 cut(s)	108
Eco32I	GATATC	2 cut(s)	367, 826
Eco57I	CTGAAG	2 cut(s)	447, 910
Eco72I	CACGTG	1 cut(s)	848
Eco81I	CCTNAGG	1 cut(s)	1076
Eco88I	CYCGRG	1 cut(s)	239
EcoRII	CCWGG	4 cut(s)	167, 487, 676, 996
EcoRV	GATATC	2 cut(s)	367, 826
FaeI	CATG	5 cut(s)	398, 412, 455, 602, 823
FaqI	GGGAC	2 cut(s)	12, 368
FatI	CATG	5 cut(s)	394, 408, 451, 598, 819
FauI	CCCGC	1 cut(s)	131
FbaI	TGATCA	2 cut(s)	456, 688
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	561, 564
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	561, 564
FspBI	CTAG	3 cut(s)	659, 740, 972
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	2 cut(s)	561, 564
GsaI	CCCAGC	1 cut(s)	768
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	2 cut(s)	231, 1049
HgaI	GACGC	1 cut(s)	1080
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	1072
Hin1II	CATG	5 cut(s)	398, 412, 455, 602, 823
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	2 cut(s)	250, 919
HindII	GTYRAC	2 cut(s)	250, 919
HinfI	GANTC	4 cut(s)	480, 736, 934, 1043
HpaII	CCGG	2 cut(s)	231, 1049
HphI	GGTGA	4 cut(s)	157, 220, 293, 1038
Hpy166II	GTNNAC	2 cut(s)	250, 919
Hpy188I	TCNGA	4 cut(s)	213, 223, 966, 1037
Hpy188III	TCNNGA	4 cut(s)	239, 241, 884, 905
Hpy8I	GTNNAC	2 cut(s)	250, 919
Hpy99I	CGWCG	1 cut(s)	1074
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	5 cut(s)	78, 145, 191, 839, 989
HpyCH4IV	ACGT	2 cut(s)	204, 847
HpyCH4V	TGCA	2 cut(s)	11, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	421, 791, 950
HpyF3I	CTNAG	2 cut(s)	210, 1076
HpySE526I	ACGT	2 cut(s)	204, 847
Hsp92I	GRCGYC	1 cut(s)	1072
Hsp92II	CATG	5 cut(s)	398, 412, 455, 602, 823
HspAI	GCGC	1 cut(s)	59
Ksp22I	TGATCA	2 cut(s)	456, 688
Kzo9I	GATC	5 cut(s)	223, 456, 688, 829, 1060
LmnI	GCTCC	2 cut(s)	538, 571
Lsp1109I	GCAGC	2 cut(s)	547, 550
LweI	GCATC	2 cut(s)	14, 402
MaeI	CTAG	3 cut(s)	659, 740, 972
MaeII	ACGT	2 cut(s)	204, 847
MaeIII	GTNAC	5 cut(s)	397, 470, 587, 1044, 1052
MalI	GATC	5 cut(s)	225, 458, 690, 831, 1062
MboI	GATC	5 cut(s)	223, 456, 688, 829, 1060
MboII	GAAGA	4 cut(s)	42, 440, 767, 979
MflI	RGATCY	1 cut(s)	1060
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	2 cut(s)	594, 632
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	1052
Mox20I	TGGCCA	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	6 cut(s)	152, 360, 405, 528, 981, 1031
MslI	CAYNNNNRTG	1 cut(s)	603
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	2 cut(s)	231, 1049
MspR9I	CCNGG	5 cut(s)	169, 489, 678, 998, 1050
Mva1269I	GAATGC	1 cut(s)	755
MvaI	CCWGG	4 cut(s)	169, 489, 678, 998
MvnI	CGCG	2 cut(s)	59, 126
MwoI	GCNNNNNNNGC	3 cut(s)	421, 791, 950
NciI	CCSGG	1 cut(s)	1050
NdeII	GATC	5 cut(s)	223, 456, 688, 829, 1060
NlaIII	CATG	5 cut(s)	398, 412, 455, 602, 823
NmuCI	GTSAC	1 cut(s)	1044
NspI	RCATGY	1 cut(s)	455
PaeR7I	CTCGAG	1 cut(s)	239
PasI	CCCWGGG	1 cut(s)	488
PciI	ACATGT	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 723
PctI	GAATGC	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	480, 736, 934
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	2 cut(s)	562, 565
Ple19I	CGATCG	1 cut(s)	832
PleI	GAGTC	1 cut(s)	1051
PmaCI	CACGTG	1 cut(s)	848
PmlI	CACGTG	1 cut(s)	848
PpsI	GAGTC	1 cut(s)	1051
Ppu21I	YACGTR	2 cut(s)	205, 848
PscI	ACATGT	1 cut(s)	451
PshAI	GACNNNNGTC	1 cut(s)	1042
Psp6I	CCWGG	4 cut(s)	167, 487, 676, 996
PspCI	CACGTG	1 cut(s)	848
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	4 cut(s)	167, 487, 676, 996
PsuI	RGATCY	1 cut(s)	1060
PvuI	CGATCG	1 cut(s)	832
RsaI	GTAC	2 cut(s)	347, 836
RsaNI	GTAC	2 cut(s)	346, 835
RseI	CAYNNNNRTG	1 cut(s)	603
SalI	GTCGAC	1 cut(s)	248
SaqAI	TTAA	6 cut(s)	152, 360, 405, 528, 981, 1031
SatI	GCNGC	2 cut(s)	561, 564
Sau3AI	GATC	5 cut(s)	223, 456, 688, 829, 1060
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	1 cut(s)	1052
ScrFI	CCNGG	5 cut(s)	169, 489, 678, 998, 1050
SfaNI	GCATC	2 cut(s)	14, 402
SfcI	CTRYAG	2 cut(s)	74, 549
Sfr274I	CTCGAG	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	4 cut(s)	239, 349, 882, 945
SmoI	CTYRAG	4 cut(s)	239, 349, 882, 945
SpeI	ACTAGT	1 cut(s)	971
Sse9I	AATT	2 cut(s)	594, 632
SsiI	CCGC	4 cut(s)	110, 124, 253, 800
SspI	AATATT	1 cut(s)	465
SspMI	CTAG	3 cut(s)	659, 740, 972
StyD4I	CCNGG	5 cut(s)	167, 487, 676, 996, 1048
TaaI	ACNGT	5 cut(s)	78, 145, 191, 839, 989
TaiI	ACGT	2 cut(s)	207, 850
TaqI	TCGA	7 cut(s)	86, 92, 98, 193, 240, 249, 828
TasI	AATT	2 cut(s)	594, 632
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	480, 736, 934
Tru1I	TTAA	6 cut(s)	152, 360, 405, 528, 981, 1031
Tru9I	TTAA	6 cut(s)	152, 360, 405, 528, 981, 1031
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	1044
TseI	GCWGC	2 cut(s)	560, 563
Tsp45I	GTSAC	1 cut(s)	1044
TspDTI	ATGAA	2 cut(s)	277, 587
TspRI	CASTG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	3 cut(s)	659, 740, 972
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.