Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Reverse (-)

4187676 .. 4191060

Gene Structure 3385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG056400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCAATCGGAGTTCCGTTCCTTCGTAATTGAGGACCAAATCGTTGGGTACATTCACAACGGATTTGCCGAGAATTTACGGAGTTACCAGGACGTTTTTACTTTTCCACCAGGCCAAGTAACCCTGCATTCTTCGCTGAGCTCACCCGAGGATAGAACAAGAGCTGTTGGGGATGTGGTTAAGAGCTTAGGGGAAGAATTGATTCCAGGTATAAGAAATGAGTTTTACCCGGTGACATCGGCTTTTGGGGCTCCAATATATTTCTCTCTTGAACGTGCAGCCGCTCCTTACTTTGGAATAAAGGTTTATGGAGTGCATATGTGTGGCTATGTTGAGAAAGATGGGAAGGAATTTCTATGGATAGGGAAGAGAAGTCAACAGAAACAGACCTATCCAGGGATGCTTGATCATCTTGTTGCTGGTGGACTGCCTCATGGGGTAGCTTGTGGGGACAATGTTGTGAAGGAATGTGAAGAGGAAGCCGGAATACCAAGCTCCATTTCCAAGGGTGCTGTACCAGTTGGTGCTGTTTCGTATATGGACATTGATGGGTATAGTTACAAAAGGGATGTCTTGTTTTGCTATGATTTAAAACTCCCTGAGAGCTTCATGCCTAAGAATCAAGATGGAGAGGTGGAGAGTTTCAAGTTGATCCCTGTGACGCATGTTGCGAACATCATCCGGAGGACACCATTTTTCAAGCCAAATTGTTCACTTGTCATCATTGATTTCCTGTTTCGACATGGGTACATTAATCCCGAATGCTTCGGATACCTGGATCTATTGCAAAGTTTGAGAAGCGGTAGTTGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

271

Amino Acids

30.2

Weight (kDa)

5.53

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4743	PF15916	2 - 101	4.9e-32	Domain of unknown function (DUF4743)
NUDIX	PF00293	111 - 223	1.9e-06	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	284
AccIII	TCCGGA	1 cut(s)	681
AciI	CCGC	2 cut(s)	282, 801
AclWI	GGATC	2 cut(s)	646, 786
AcsI	RAATTY	2 cut(s)	73, 350
AfaI	GTAC	3 cut(s)	50, 516, 749
AfiI	CCNNNNNNNGG	2 cut(s)	293, 396
AgsI	TTSAA	3 cut(s)	272, 646, 700
AjnI	CCWGG	5 cut(s)	87, 109, 205, 394, 774
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	6 cut(s)	141, 164, 186, 443, 495, 606
AluI	AGCT	6 cut(s)	141, 164, 186, 443, 495, 606
Alw21I	GWGCWC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	646, 786
Ama87I	CYCGRG	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	681
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	73, 350
ArsI	GACNNNNNNTTYG	2 cut(s)	555, 587
AseI	ATTAAT	1 cut(s)	753
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	135, 244
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	143, 253
BarI	GAAGNNNNNNTAC	2 cut(s)	471, 503
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	3 cut(s)	335, 542, 620
BciT130I	CCWGG	5 cut(s)	89, 111, 207, 396, 776
BciVI	GTATCC	1 cut(s)	764
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	764
BisI	GCNGC	2 cut(s)	279, 282
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	280, 283
Bme1390I	CCNGG	6 cut(s)	89, 111, 207, 230, 396, 776
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	6 cut(s)	89, 111, 207, 230, 396, 776
BmsI	GCATC	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	187
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	147, 395, 504
BsaWI	WCCGGW	1 cut(s)	681
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 396
Bse1I	ACTGG	1 cut(s)	518
BseAI	TCCGGA	1 cut(s)	681
BseBI	CCWGG	5 cut(s)	89, 111, 207, 396, 776
BseDI	CCNNGG	3 cut(s)	147, 395, 504
BseGI	GGATG	4 cut(s)	178, 405, 574, 678
BseLI	CCNNNNNNNGG	2 cut(s)	293, 396
BseMII	CTCAG	2 cut(s)	128, 591
BseNI	ACTGG	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	230, 483, 682
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	293, 396
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	2 cut(s)	127, 767
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	143, 253
Bsp13I	TCCGGA	1 cut(s)	681
Bsp143I	GATC	3 cut(s)	406, 651, 778
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	2 cut(s)	282, 801
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	129, 592
BspEI	TCCGGA	1 cut(s)	681
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	646, 786
BsrBI	CCGCTC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	3 cut(s)	147, 395, 504
BssMI	GATC	3 cut(s)	406, 651, 778
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	5 cut(s)	89, 111, 207, 396, 776
Bst6I	CTCTTC	2 cut(s)	362, 468
BstDEI	CTNAG	4 cut(s)	137, 187, 600, 615
BstF5I	GGATG	4 cut(s)	178, 405, 574, 678
BstKTI	GATC	3 cut(s)	409, 654, 781
BstMBI	GATC	3 cut(s)	406, 651, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 248
BstNI	CCWGG	5 cut(s)	89, 111, 207, 396, 776
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	6 cut(s)	87, 109, 205, 228, 394, 774
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	778
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	778
BsuI	GTATCC	1 cut(s)	764
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	4 cut(s)	178, 405, 574, 678
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	1 cut(s)	670
Csp6I	GTAC	3 cut(s)	49, 515, 748
CviAII	CATG	4 cut(s)	434, 610, 665, 743
CviQI	GTAC	3 cut(s)	49, 515, 748
DdeI	CTNAG	4 cut(s)	137, 187, 600, 615
DpnI	GATC	3 cut(s)	408, 653, 780
DpnII	GATC	3 cut(s)	406, 651, 778
DraI	TTTAAA	1 cut(s)	591
Eam1104I	CTCTTC	2 cut(s)	362, 468
EarI	CTCTTC	2 cut(s)	362, 468
Ecl136II	GAGCTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	2 cut(s)	143, 253
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	141
EcoRII	CCWGG	5 cut(s)	87, 109, 205, 394, 774
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	2 cut(s)	143, 253
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	4 cut(s)	437, 613, 668, 746
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	4 cut(s)	433, 609, 664, 742
FauNDI	CATATG	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	279, 282
FokI	GGATG	4 cut(s)	185, 412, 581, 665
FriOI	GRGCYC	2 cut(s)	143, 253
Fsp4HI	GCNGC	2 cut(s)	279, 282
GluI	GCNGC	2 cut(s)	279, 282
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	3 cut(s)	230, 483, 682
HgaI	GACGC	1 cut(s)	670
Hin1II	CATG	4 cut(s)	437, 613, 668, 746
HincII	GTYRAC	1 cut(s)	377
HindII	GTYRAC	1 cut(s)	377
HinfI	GANTC	2 cut(s)	202, 619
HpaII	CCGG	3 cut(s)	230, 483, 682
HphI	GGTGA	2 cut(s)	135, 244
Hpy166II	GTNNAC	3 cut(s)	377, 425, 713
Hpy188I	TCNGA	2 cut(s)	10, 770
Hpy188III	TCNNGA	4 cut(s)	269, 623, 682, 758
Hpy8I	GTNNAC	3 cut(s)	377, 425, 713
HpyAV	CCTTC	3 cut(s)	31, 340, 457
HpyCH4IV	ACGT	2 cut(s)	93, 274
HpyCH4V	TGCA	5 cut(s)	4, 127, 278, 316, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 248
HpyF3I	CTNAG	4 cut(s)	137, 187, 600, 615
HpySE526I	ACGT	2 cut(s)	93, 274
Hsp92II	CATG	4 cut(s)	437, 613, 668, 746
Kpn2I	TCCGGA	1 cut(s)	681
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	406, 651, 778
LmnI	GCTCC	3 cut(s)	256, 289, 500
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	1 cut(s)	390
MaeII	ACGT	2 cut(s)	93, 274
MaeIII	GTNAC	5 cut(s)	83, 118, 232, 557, 658
MalI	GATC	3 cut(s)	408, 653, 780
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	3 cut(s)	406, 651, 778
MboII	GAAGA	4 cut(s)	123, 206, 379, 485
MflI	RGATCY	1 cut(s)	778
MhlI	GDGCHC	2 cut(s)	143, 253
MluCI	AATT	5 cut(s)	27, 73, 197, 350, 706
MnlI	CCTC	6 cut(s)	25, 142, 441, 469, 625, 678
MroI	TCCGGA	1 cut(s)	681
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	3 cut(s)	180, 590, 753
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	3 cut(s)	230, 483, 682
MspR9I	CCNGG	6 cut(s)	89, 111, 207, 230, 396, 776
Mva1269I	GAATGC	2 cut(s)	127, 767
MvaI	CCWGG	5 cut(s)	89, 111, 207, 396, 776
MwoI	GCNNNNNNNGC	2 cut(s)	133, 248
NciI	CCSGG	1 cut(s)	230
NdeI	CATATG	1 cut(s)	318
NdeII	GATC	3 cut(s)	406, 651, 778
NlaIII	CATG	4 cut(s)	437, 613, 668, 746
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	232, 658
NspI	RCATGY	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 668
PctI	GAATGC	2 cut(s)	127, 767
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	202, 619
PkrI	GCNGC	2 cut(s)	280, 283
PshBI	ATTAAT	1 cut(s)	753
Psp124BI	GAGCTC	1 cut(s)	143
Psp6I	CCWGG	5 cut(s)	87, 109, 205, 394, 774
PspGI	CCWGG	5 cut(s)	87, 109, 205, 394, 774
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	778
RsaI	GTAC	3 cut(s)	50, 516, 749
RsaNI	GTAC	3 cut(s)	49, 515, 748
RseI	CAYNNNNRTG	1 cut(s)	321
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	3 cut(s)	180, 590, 753
SatI	GCNGC	2 cut(s)	279, 282
Sau3AI	GATC	3 cut(s)	406, 651, 778
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	6 cut(s)	89, 111, 207, 230, 396, 776
SduI	GDGCHC	2 cut(s)	143, 253
SfaNI	GCATC	1 cut(s)	390
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	5 cut(s)	27, 73, 197, 350, 706
SsiI	CCGC	2 cut(s)	282, 801
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	6 cut(s)	87, 109, 205, 228, 394, 774
StyI	CCWWGG	1 cut(s)	504
TaiI	ACGT	2 cut(s)	96, 277
TaqI	TCGA	1 cut(s)	739
TasI	AATT	5 cut(s)	27, 73, 197, 350, 706
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	202, 619
Tru1I	TTAA	3 cut(s)	180, 590, 753
Tru9I	TTAA	3 cut(s)	180, 590, 753
TseFI	GTSAC	2 cut(s)	232, 658
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	2 cut(s)	232, 658
TspDTI	ATGAA	1 cut(s)	598
TspGWI	ACGGA	3 cut(s)	5, 75, 94
VpaK11BI	GGWCC	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	753
XapI	RAATTY	2 cut(s)	73, 350
XceI	RCATGY	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.