Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Forward (+)

18031541 .. 18034900

Gene Structure 3360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G186600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTACACACAGGCGAACAACACGAACCAATTGGTGAGTACTGTAGCAAACAAAAGGATATCTTGTAAAATGAGAATCGAACCCGCTCGCATGGCCTGCAGCGGTGGCATTCCTCAGCTCTCTCACAGACTCATCGACTCTCTGGCCTTCCGCTTTACTGCCAAAGCTTTTCGCGCTTTCCCCAAGGCGCTTACGACGTCGTTCCCAGTTCGTTCCACCCAGCAAGCTTTTCACAAAGTTCTCACTTGTGCCTCCGACGATGATGTCTTCACTTGGGACGACGTCGTTAGGATATCCAAACCGGAAACCCTTTCCGACGACCCTTCAGATCTCAGGGGCTACTGGGAAAAGATCAAAATCTGCAATCGCAGACTGGAATCGCAATCTGAGTTCCTTTCCTTTGTAATTGAGGACCAAATCGTTGGTTACATTCACAAAGGTTTTGCCGAGAATTTACGTAGTTTCAAGGACGTGTTTACTTTCCCACCAGAAAATTCAAACTCTAATGGCAGTTCAATAACCTTGCATTCATCGCTGAGCACAGACGAGGACAGGACGGGAGCGGTGGGAGATGTAATCAAAAGCTTAGGGGAAGAACATATTCCAGGTATAAGGAATGAGCTATACCCTGTGACATCATCCTTTGGGGCATCCATATTTTTCTCTCTAGAACGTGCAGCTGCTCCTTATTTTGGAATAAAGGCTTATGGAGTGCAAATGAATGGCTATGTTGAAAAGGATGGGAAGAAGTTTCTATGGATAGGGAAGAGAAGTCAACAGAAAACCACTTATCCAGGGATGCTTGATCAACTAGTTGCTGGGGGACTGCCTCATGGGGTTGCATGTGGGGACAATGTTGTAAAGGAATGTGAAGAGGAAGCCGGAATACCCAGTTCCATTTCTAGTGTAGCTATACCAGTTGGTGCTGTTTCATATATGGACATTGATGGGTATAGATTCAAAAGGGACGTTTTGTTTTGCTATGATTTAAAACTTCCTGAGAGTTTCACGCCTAAGAATCAAGATGGAGAGGTGGAGAGCTTCAAGTTGATCCCTGTGATGGATGTTGCAAACATCATACAAAGGACACAATTTTTCAAGCCAAATTGCTCTCTTGTCATCATTGATTTCCTGTTTCGACACGGGTACATTAGGCCGGAATGCTTTGGATACCTGGATCTACTACAAAGTTTGAGGAGTGGTGATTGTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

405

Amino Acids

45.12

Weight (kDa)

6.21

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	2 cut(s)	200, 285
AccBSI	CCGCTC	2 cut(s)	86, 563
AccII	CGCG	1 cut(s)	174
AciI	CCGC	4 cut(s)	84, 102, 151, 563
AclWI	GGATC	2 cut(s)	1045, 1185
AcsI	RAATTY	2 cut(s)	451, 493
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	2 cut(s)	197, 282
AfaI	GTAC	3 cut(s)	5, 40, 1148
AfiI	CCNNNNNNNGG	2 cut(s)	692, 1060
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	7 cut(s)	466, 498, 516, 734, 961, 1045, 1099
AhlI	ACTAGT	1 cut(s)	811
AjiI	CACGTC	1 cut(s)	472
AjnI	CCWGG	3 cut(s)	604, 793, 1173
AluBI	AGCT	8 cut(s)	118, 167, 227, 585, 622, 680, 911, 1041
AluI	AGCT	8 cut(s)	118, 167, 227, 585, 622, 680, 911, 1041
Alw21I	GWGCWC	1 cut(s)	542
AlwI	GGATC	2 cut(s)	1045, 1185
AoxI	GGCC	3 cut(s)	93, 144, 1154
ApeKI	GCWGC	3 cut(s)	99, 677, 680
ApoI	RAATTY	2 cut(s)	451, 493
Asp700I	GAANNNNTTC	1 cut(s)	600
AspLEI	GCGC	2 cut(s)	176, 190
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	2 cut(s)	46, 1214
AvaII	GGWCC	1 cut(s)	412
BarI	GAAGNNNNNNTAC	2 cut(s)	870, 902
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	542
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	111, 667, 689
BccI	CCATC	4 cut(s)	734, 941, 1019, 1054
BciT130I	CCWGG	3 cut(s)	606, 795, 1175
BciVI	GTATCC	1 cut(s)	1163
BclI	TGATCA	1 cut(s)	805
BcuI	ACTAGT	1 cut(s)	811
BfaI	CTAG	3 cut(s)	668, 812, 903
BfmI	CTRYAG	2 cut(s)	42, 97
BfoI	RGCGCY	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	1163
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	3 cut(s)	100, 678, 681
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	3 cut(s)	101, 679, 682
BmcAI	AGTACT	1 cut(s)	40
Bme1390I	CCNGG	3 cut(s)	606, 795, 1175
Bme18I	GGWCC	1 cut(s)	412
BmgBI	CACGTC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	412
BmrFI	CCNGG	3 cut(s)	606, 795, 1175
BmrI	ACTGGG	3 cut(s)	200, 352, 885
BmsI	GCATC	2 cut(s)	659, 789
BmuI	ACTGGG	3 cut(s)	200, 352, 885
BpiI	GAAGAC	1 cut(s)	259
Bpu10I	CCTNAGC	2 cut(s)	114, 586
Bpu1102I	GCTNAGC	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	458
BsaBI	GATNNNNATC	1 cut(s)	356
BsaHI	GRCGYC	2 cut(s)	197, 282
BsaJI	CCNNGG	2 cut(s)	183, 794
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 1060
Bse1I	ACTGG	5 cut(s)	206, 347, 378, 891, 917
Bse8I	GATNNNNATC	1 cut(s)	356
BseBI	CCWGG	3 cut(s)	606, 795, 1175
BseDI	CCNNGG	2 cut(s)	183, 794
BseGI	GGATG	5 cut(s)	638, 650, 745, 804, 1069
BseJI	GATNNNNATC	1 cut(s)	356
BseLI	CCNNNNNNNGG	2 cut(s)	692, 1060
BseMII	CTCAG	5 cut(s)	128, 346, 378, 527, 990
BseNI	ACTGG	5 cut(s)	206, 347, 378, 891, 917
BseRI	GAGGAG	1 cut(s)	1210
BseXI	GCAGC	3 cut(s)	111, 667, 689
BseYI	CCCAGC	2 cut(s)	219, 818
BsgI	GTGCAG	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	95, 146, 1156
BsiHKAI	GWGCWC	1 cut(s)	542
BsiSI	CCGG	3 cut(s)	302, 882, 1157
BslFI	GGGAC	4 cut(s)	290, 837, 863, 980
BslI	CCNNNNNNNGG	2 cut(s)	692, 1060
BsmFI	GGGAC	4 cut(s)	290, 837, 863, 980
BsmI	GAATGC	3 cut(s)	108, 526, 1166
BsnI	GGCC	3 cut(s)	95, 146, 1156
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	328, 351, 805, 1050, 1177
Bsp1720I	GCTNAGC	1 cut(s)	536
BspACI	CCGC	4 cut(s)	84, 102, 151, 563
BspANI	GGCC	3 cut(s)	95, 146, 1156
BspCNI	CTCAG	5 cut(s)	127, 345, 379, 528, 991
BspFNI	CGCG	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	101
BspPI	GGATC	2 cut(s)	1045, 1185
BsrBI	CCGCTC	2 cut(s)	86, 563
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	5 cut(s)	206, 347, 378, 891, 917
BssECI	CCNNGG	2 cut(s)	183, 794
BssMI	GATC	5 cut(s)	328, 351, 805, 1050, 1177
BssNI	GRCGYC	2 cut(s)	197, 282
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	3 cut(s)	606, 795, 1175
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	761, 867
BstACI	GRCGYC	2 cut(s)	197, 282
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	458
BstC8I	GCNNGC	3 cut(s)	88, 97, 225
BstDEI	CTNAG	7 cut(s)	114, 332, 387, 536, 586, 999, 1014
BstF5I	GGATG	5 cut(s)	638, 650, 745, 804, 1069
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	2 cut(s)	176, 190
BstKTI	GATC	5 cut(s)	331, 354, 808, 1053, 1180
BstMBI	GATC	5 cut(s)	328, 351, 805, 1050, 1177
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 96, 105, 173, 532
BstNI	CCWGG	3 cut(s)	606, 795, 1175
BstNSI	RCATGY	1 cut(s)	846
BstSCI	CCNGG	3 cut(s)	604, 793, 1173
BstSFI	CTRYAG	2 cut(s)	42, 97
BstSNI	TACGTA	1 cut(s)	458
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	111, 667, 689
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	2 cut(s)	328, 1177
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	2 cut(s)	328, 1177
BsuI	GTATCC	1 cut(s)	1163
BsuRI	GGCC	3 cut(s)	95, 146, 1156
BtgZI	GCGATG	1 cut(s)	516
BtrI	CACGTC	1 cut(s)	472
BtsCI	GGATG	5 cut(s)	638, 650, 745, 804, 1069
Cac8I	GCNNGC	3 cut(s)	88, 97, 225
CfoI	GCGC	2 cut(s)	176, 190
Cfr13I	GGNCC	1 cut(s)	412
Csp6I	GTAC	3 cut(s)	4, 39, 1147
CviAII	CATG	3 cut(s)	91, 833, 843
CviQI	GTAC	3 cut(s)	4, 39, 1147
DdeI	CTNAG	7 cut(s)	114, 332, 387, 536, 586, 999, 1014
DpnI	GATC	5 cut(s)	330, 353, 807, 1052, 1179
DpnII	GATC	5 cut(s)	328, 351, 805, 1050, 1177
DraI	TTTAAA	1 cut(s)	990
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	2 cut(s)	761, 867
EarI	CTCTTC	2 cut(s)	761, 867
Eco105I	TACGTA	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	183
Eco32I	GATATC	2 cut(s)	60, 294
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	3 cut(s)	604, 793, 1173
EcoRV	GATATC	2 cut(s)	60, 294
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	94, 836, 846
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FaqI	GGGAC	4 cut(s)	290, 837, 863, 980
FatI	CATG	3 cut(s)	90, 832, 842
FauI	CCCGC	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	3 cut(s)	100, 678, 681
FokI	GGATG	5 cut(s)	625, 637, 752, 811, 1076
Fsp4HI	GCNGC	3 cut(s)	100, 678, 681
FspBI	CTAG	3 cut(s)	668, 812, 903
GlaI	GCGC	2 cut(s)	175, 189
GluI	GCNGC	3 cut(s)	100, 678, 681
GsaI	CCCAGC	2 cut(s)	223, 822
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	95, 146, 1156
HapII	CCGG	3 cut(s)	302, 882, 1157
HhaI	GCGC	2 cut(s)	176, 190
Hin1I	GRCGYC	2 cut(s)	197, 282
Hin1II	CATG	3 cut(s)	94, 836, 846
Hin6I	GCGC	2 cut(s)	174, 188
HinP1I	GCGC	2 cut(s)	174, 188
HincII	GTYRAC	1 cut(s)	776
HindII	GTYRAC	1 cut(s)	776
HindIII	AAGCTT	3 cut(s)	165, 225, 583
HinfI	GANTC	6 cut(s)	75, 129, 137, 377, 957, 1018
HpaII	CCGG	3 cut(s)	302, 882, 1157
HphI	GGTGA	2 cut(s)	46, 1214
Hpy166II	GTNNAC	3 cut(s)	6, 477, 776
Hpy188I	TCNGA	4 cut(s)	256, 316, 328, 388
Hpy188III	TCNNGA	3 cut(s)	668, 998, 1022
Hpy8I	GTNNAC	3 cut(s)	6, 477, 776
Hpy99I	CGWCG	6 cut(s)	199, 202, 260, 284, 287, 320
HpyAV	CCTTC	2 cut(s)	157, 333
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	6 cut(s)	197, 282, 457, 471, 673, 969
HpyCH4V	TGCA	7 cut(s)	99, 363, 526, 677, 715, 842, 1070
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 96, 105, 173, 532
HpyF3I	CTNAG	7 cut(s)	114, 332, 387, 536, 586, 999, 1014
HpySE526I	ACGT	6 cut(s)	197, 282, 457, 471, 673, 969
Hsp92I	GRCGYC	2 cut(s)	197, 282
Hsp92II	CATG	3 cut(s)	94, 836, 846
HspAI	GCGC	2 cut(s)	174, 188
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	5 cut(s)	328, 351, 805, 1050, 1177
LmnI	GCTCC	2 cut(s)	560, 688
Lsp1109I	GCAGC	3 cut(s)	111, 667, 689
LweI	GCATC	2 cut(s)	659, 789
MaeI	CTAG	3 cut(s)	668, 812, 903
MaeII	ACGT	6 cut(s)	197, 282, 457, 471, 673, 969
MaeIII	GTNAC	2 cut(s)	425, 631
MalI	GATC	5 cut(s)	330, 353, 807, 1052, 1179
MbiI	CCGCTC	2 cut(s)	86, 563
MboI	GATC	5 cut(s)	328, 351, 805, 1050, 1177
MboII	GAAGA	5 cut(s)	259, 605, 757, 778, 884
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	2 cut(s)	328, 1177
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	6 cut(s)	29, 405, 451, 493, 1091, 1105
MlyI	GAGTC	2 cut(s)	123, 131
MmeI	TCCRAC	2 cut(s)	279, 339
MnlI	CCTC	8 cut(s)	123, 262, 403, 541, 840, 868, 1024, 1188
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	1 cut(s)	989
MspA1I	CMGCKG	2 cut(s)	102, 680
MspI	CCGG	3 cut(s)	302, 882, 1157
MspR9I	CCNGG	3 cut(s)	606, 795, 1175
MunI	CAATTG	1 cut(s)	29
Mva1269I	GAATGC	3 cut(s)	108, 526, 1166
MvaI	CCWGG	3 cut(s)	606, 795, 1175
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	5 cut(s)	92, 96, 105, 173, 532
NdeII	GATC	5 cut(s)	328, 351, 805, 1050, 1177
NlaIII	CATG	3 cut(s)	94, 836, 846
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	1 cut(s)	631
NspI	RCATGY	1 cut(s)	846
PctI	GAATGC	3 cut(s)	108, 526, 1166
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	4 cut(s)	75, 377, 957, 1018
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	101, 679, 682
PleI	GAGTC	2 cut(s)	123, 131
PpsI	GAGTC	2 cut(s)	123, 131
Ppu21I	YACGTR	1 cut(s)	458
Psp6I	CCWGG	3 cut(s)	604, 793, 1173
PspFI	CCCAGC	2 cut(s)	219, 818
PspGI	CCWGG	3 cut(s)	604, 793, 1173
PspPI	GGNCC	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	101
PsuI	RGATCY	2 cut(s)	328, 1177
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	3 cut(s)	5, 40, 1148
RsaNI	GTAC	3 cut(s)	4, 39, 1147
SaqAI	TTAA	1 cut(s)	989
SatI	GCNGC	3 cut(s)	100, 678, 681
Sau3AI	GATC	5 cut(s)	328, 351, 805, 1050, 1177
Sau96I	GGNCC	1 cut(s)	412
ScaI	AGTACT	1 cut(s)	40
SchI	GAGTC	2 cut(s)	123, 131
ScrFI	CCNGG	3 cut(s)	606, 795, 1175
SduI	GDGCHC	1 cut(s)	542
SfaNI	GCATC	2 cut(s)	659, 789
SfcI	CTRYAG	2 cut(s)	42, 97
SinI	GGWCC	1 cut(s)	412
SnaBI	TACGTA	1 cut(s)	458
SpeI	ACTAGT	1 cut(s)	811
Sse9I	AATT	6 cut(s)	29, 405, 451, 493, 1091, 1105
SsiI	CCGC	4 cut(s)	84, 102, 151, 563
SspMI	CTAG	3 cut(s)	668, 812, 903
StyD4I	CCNGG	3 cut(s)	604, 793, 1173
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	6 cut(s)	200, 285, 460, 474, 676, 972
TaqI	TCGA	3 cut(s)	78, 135, 1138
TasI	AATT	6 cut(s)	29, 405, 451, 493, 1091, 1105
TatI	WGTACW	2 cut(s)	3, 38
TfiI	GAWTC	4 cut(s)	75, 377, 957, 1018
Tru1I	TTAA	1 cut(s)	989
Tru9I	TTAA	1 cut(s)	989
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	3 cut(s)	99, 677, 680
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	3 cut(s)	519, 734, 921
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	2 cut(s)	451, 493
XbaI	TCTAGA	1 cut(s)	667
XceI	RCATGY	1 cut(s)	846
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	3 cut(s)	668, 812, 903
ZraI	GACGTC	2 cut(s)	198, 283
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.