AT5G19890

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009944
Physical Location & Seq
Reverse (-)
6724076 .. 6725966
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19890.1

Sequence Viewer

Length: 987 bp
ATGAAAACACAAACCAAAGTGATGGGAGGACATGTCTTGCTTACTGTTTTCACTCTTTGTATGCTTTGTTCAGGGGTTAGGGCACAGCTAAGCCCTGACATTTATGCTAAATCGTGCCCCAATCTAGTTCAAATTGTCCGTAAACAAGTTGCCATCGCCCTGAAGGCCGAGATACGGATGGCTGCTTCTCTCATTCGTCTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCGTCGTTATTGTTGGATGGAGCTGACAGCGAGAAACTCGCGATCCCAAACATTAACTCTGCTAGAGGATTTGAAGTAATTGATACAATCAAAGCCGCTGTGGAAAACGCATGTCCTGGTGTTGTTTCTTGTGCTGATATCCTCACTTTGGCCGCTCGTGACTCCGTTGTATTGAGTGGAGGGCCTGGGTGGAGAGTGGCATTAGGAAGAAAAGATGGATTGGTGGCAAATCAGAACAGTGCAAACAATCTACCATCTCCTTTTGAACCTTTAGACGCCATTATCGCCAAATTTGTAGCCGTAAACCTTAACATCACCGACGTCGTAGCTTTATCAGGAGCTCACACCTTTGGACAAGCGAAGTGTGCTGTCTTCAGCAACCGTCTGTTCAACTTTACCGGCTTGGGAAATCCCGACGCAACACTTGAGACATCACTCTTGTCTAATCTGCAAACAGTTTGTCCGCTCGGAGGAAATAGTAACATAACAGCACCTCTTGACAGGAGCACTACGGACACCTTCGACAACAATTATTTCAAGAACCTGCTTGAAGGAAAAGGTCTTTTGAGTTCTGATCAGATTCTGTTCTCGAGTGACTTAGCCGTGAACACCACAAAGAAACTAGTGGAGGCTTATAGTCGGAGCCAGAGCTTGTTTTTCAGGGACTTCACATGTGCGATGATCAGAATGGGAAACATTTCGAATGGAGCTAGTGGGGAGGTTAGGACAAACTGCAGGGTTATCAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

328

Amino Acids

35.02

Weight (kDa)

7.99

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 292 1.3e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 558
Acc36I ACCTGC 1 cut(s) 786
AccBSI CCGCTC 2 cut(s) 389, 700
AccII CGCG 1 cut(s) 275
AciI CCGC 3 cut(s) 330, 387, 698
AclWI GGATC 1 cut(s) 271
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 2 cut(s) 182, 592
AcyI GRCGYC 2 cut(s) 510, 555
AfiI CCNNNNNNNGG 3 cut(s) 174, 382, 704
AflIII ACRYGT 2 cut(s) 31, 905
AgsI TTSAA 6 cut(s) 131, 308, 500, 625, 772, 785
AhlI ACTAGT 1 cut(s) 856
AjnI CCWGG 2 cut(s) 349, 418
AluBI AGCT 6 cut(s) 88, 257, 563, 575, 885, 944
AluI AGCT 6 cut(s) 88, 257, 563, 575, 885, 944
Alw21I GWGCWC 2 cut(s) 577, 743
Alw26I GTCTC 1 cut(s) 656
AlwI GGATC 1 cut(s) 271
AlwNI CAGNNNCTG 1 cut(s) 817
Ama87I CYCGRG 1 cut(s) 823
AoxI GGCC 3 cut(s) 165, 384, 416
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 524
ArsI GACNNNNNNTTYG 2 cut(s) 679, 711
Asp700I GAANNNNTTC 1 cut(s) 931
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 541
AsuII TTCGAA 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 823
BaeGI GKGCMC 2 cut(s) 85, 119
BanII GRGCYC 1 cut(s) 577
BauI CACGAG 1 cut(s) 390
BbsI GAAGAC 2 cut(s) 191, 598
Bbv12I GWGCWC 2 cut(s) 577, 743
BbvI GCAGC 1 cut(s) 169
BccI CCATC 6 cut(s) 16, 161, 172, 245, 443, 496
BceAI ACGGC 2 cut(s) 518, 821
BciT130I CCWGG 2 cut(s) 351, 420
BclI TGATCA 2 cut(s) 808, 915
BcoDI GTCTC 1 cut(s) 656
BcuI ACTAGT 1 cut(s) 856
BfaI CTAG 4 cut(s) 125, 297, 857, 945
BfmI CTRYAG 1 cut(s) 967
BfuAI ACCTGC 1 cut(s) 786
BglI GCCNNNNNGGC 1 cut(s) 164
BisI GCNGC 3 cut(s) 183, 330, 387
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 3 cut(s) 184, 331, 388
Bme1390I CCNGG 2 cut(s) 351, 420
BmeT110I CYCGRG 1 cut(s) 823
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 878
BmrFI CCNGG 2 cut(s) 351, 420
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 2 cut(s) 191, 598
Bpu1102I GCTNAGC 1 cut(s) 89
Bpu14I TTCGAA 1 cut(s) 935
BpuEI CTTGAG 1 cut(s) 680
BsaHI GRCGYC 2 cut(s) 510, 555
BsaJI CCNNGG 1 cut(s) 419
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 382, 704
Bse118I RCCGGY 1 cut(s) 632
BseBI CCWGG 2 cut(s) 351, 420
BseDI CCNNGG 1 cut(s) 419
BseGI GGATG 2 cut(s) 183, 256
BseLI CCNNNNNNNGG 3 cut(s) 174, 382, 704
BseSI GKGCMC 2 cut(s) 85, 119
BseXI GCAGC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 3 cut(s) 167, 386, 418
BsiHKAI GWGCWC 2 cut(s) 577, 743
BsiHKCI CYCGRG 1 cut(s) 823
BsiSI CCGG 1 cut(s) 633
BslFI GGGAC 1 cut(s) 911
BslI CCNNNNNNNGG 3 cut(s) 174, 382, 704
BsmAI GTCTC 1 cut(s) 656
BsmFI GGGAC 1 cut(s) 911
BsnI GGCC 3 cut(s) 167, 386, 418
BsoBI CYCGRG 1 cut(s) 823
Bsp119I TTCGAA 1 cut(s) 935
Bsp1286I GDGCHC 4 cut(s) 85, 119, 577, 743
Bsp143I GATC 3 cut(s) 276, 808, 915
Bsp1720I GCTNAGC 1 cut(s) 89
Bsp68I TCGCGA 1 cut(s) 275
BspACI CCGC 3 cut(s) 330, 387, 698
BspANI GGCC 3 cut(s) 167, 386, 418
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 878
BspMAI CTGCAG 1 cut(s) 971
BspMI ACCTGC 1 cut(s) 786
BspPI GGATC 1 cut(s) 271
BspT104I TTCGAA 1 cut(s) 935
BsrBI CCGCTC 2 cut(s) 389, 700
BsrFI RCCGGY 1 cut(s) 632
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 3 cut(s) 276, 808, 915
BssNI GRCGYC 2 cut(s) 510, 555
BssSI CACGAG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 351, 420
Bst4CI ACNGT 4 cut(s) 46, 473, 617, 691
BstACI GRCGYC 2 cut(s) 510, 555
BstBI TTCGAA 1 cut(s) 935
BstDEI CTNAG 2 cut(s) 89, 832
BstF5I GGATG 2 cut(s) 183, 256
BstFNI CGCG 1 cut(s) 275
BstKTI GATC 3 cut(s) 279, 811, 918
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 3 cut(s) 276, 808, 915
BstMWI GCNNNNNNNGC 3 cut(s) 164, 518, 599
BstNI CCWGG 2 cut(s) 351, 420
BstNSI RCATGY 3 cut(s) 35, 348, 909
BstSCI CCNGG 2 cut(s) 349, 418
BstSFI CTRYAG 1 cut(s) 967
BstSLI GKGCMC 2 cut(s) 85, 119
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 2 cut(s) 191, 598
BstXI CCANNNNNNTGG 1 cut(s) 22
BsuRI GGCC 3 cut(s) 167, 386, 418
BtgZI GCGATG 2 cut(s) 139, 926
BtsCI GGATG 2 cut(s) 183, 256
BtsIMutI CAGTG 1 cut(s) 478
BtuMI TCGCGA 1 cut(s) 275
BveI ACCTGC 1 cut(s) 786
CaiI CAGNNNCTG 1 cut(s) 817
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 1 cut(s) 416
CseI GACGC 3 cut(s) 225, 518, 659
CviAII CATG 3 cut(s) 32, 345, 906
DdeI CTNAG 2 cut(s) 89, 832
DpnI GATC 3 cut(s) 278, 810, 917
DpnII GATC 3 cut(s) 276, 808, 915
EaeI YGGCCR 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 577
Eco32I GATATC 1 cut(s) 373
Eco53kI GAGCTC 1 cut(s) 575
Eco57I CTGAAG 2 cut(s) 182, 592
Eco88I CYCGRG 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 349, 418
EcoRV GATATC 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 577
FaeI CATG 3 cut(s) 35, 348, 909
FaiI YATR 7 cut(s) 33, 62, 105, 346, 719, 870, 907
FaqI GGGAC 1 cut(s) 911
FatI CATG 3 cut(s) 31, 344, 905
FbaI TGATCA 2 cut(s) 808, 915
Fnu4HI GCNGC 3 cut(s) 183, 330, 387
FokI GGATG 2 cut(s) 190, 263
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 3 cut(s) 183, 330, 387
FspBI CTAG 4 cut(s) 125, 297, 857, 945
GluI GCNGC 3 cut(s) 183, 330, 387
HaeIII GGCC 3 cut(s) 167, 386, 418
HapII CCGG 1 cut(s) 633
HgaI GACGC 3 cut(s) 225, 518, 659
Hin1I GRCGYC 2 cut(s) 510, 555
Hin1II CATG 3 cut(s) 35, 348, 909
HinfI GANTC 2 cut(s) 395, 814
HpaII CCGG 1 cut(s) 633
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 3 cut(s) 143, 538, 841
Hpy188I TCNGA 6 cut(s) 468, 704, 808, 813, 876, 920
Hpy188III TCNNGA 7 cut(s) 274, 392, 570, 647, 731, 772, 823
Hpy8I GTNNAC 3 cut(s) 143, 538, 841
Hpy99I CGWCG 4 cut(s) 241, 557, 560, 653
HpyAV CCTTC 3 cut(s) 157, 763, 779
HpyCH4III ACNGT 4 cut(s) 46, 473, 617, 691
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 3 cut(s) 476, 685, 969
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 518, 599
HpyF3I CTNAG 2 cut(s) 89, 832
HpySE526I ACGT 1 cut(s) 555
Hsp92I GRCGYC 2 cut(s) 510, 555
Hsp92II CATG 3 cut(s) 35, 348, 909
Ksp22I TGATCA 2 cut(s) 808, 915
Kzo9I GATC 3 cut(s) 276, 808, 915
LmnI GCTCC 5 cut(s) 254, 572, 738, 876, 941
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 223
MaeI CTAG 4 cut(s) 125, 297, 857, 945
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 3 cut(s) 392, 713, 827
MalI GATC 3 cut(s) 278, 810, 917
MbiI CCGCTC 2 cut(s) 389, 700
MboI GATC 3 cut(s) 276, 808, 915
MboII GAAGA 3 cut(s) 191, 453, 598
MhlI GDGCHC 4 cut(s) 85, 119, 577, 743
MluCI AATT 5 cut(s) 132, 312, 524, 763, 982
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 2 cut(s) 228, 854
MnlI CCTC 8 cut(s) 20, 293, 386, 407, 698, 738, 856, 946
MroXI GAANNNNTTC 1 cut(s) 931
MseI TTAA 3 cut(s) 222, 288, 543
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 2 cut(s) 351, 420
MvaI CCWGG 2 cut(s) 351, 420
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 3 cut(s) 164, 518, 599
NdeII GATC 3 cut(s) 276, 808, 915
NlaIII CATG 3 cut(s) 35, 348, 909
NlaIV GGNNCC 1 cut(s) 878
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 2 cut(s) 392, 827
NruI TCGCGA 1 cut(s) 275
NspI RCATGY 3 cut(s) 35, 348, 909
NspV TTCGAA 1 cut(s) 935
PaeR7I CTCGAG 1 cut(s) 823
PciI ACATGT 2 cut(s) 31, 905
PdmI GAANNNNTTC 1 cut(s) 931
PfeI GAWTC 1 cut(s) 814
PkrI GCNGC 3 cut(s) 184, 331, 388
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
PscI ACATGT 2 cut(s) 31, 905
Psp124BI GAGCTC 1 cut(s) 577
Psp6I CCWGG 2 cut(s) 349, 418
PspGI CCWGG 2 cut(s) 349, 418
PspN4I GGNNCC 1 cut(s) 878
PspPI GGNCC 1 cut(s) 416
PsrI GAACNNNNNNTAC 2 cut(s) 52, 84
PstI CTGCAG 1 cut(s) 971
PstNI CAGNNNCTG 1 cut(s) 817
RruI TCGCGA 1 cut(s) 275
SacI GAGCTC 1 cut(s) 577
SaqAI TTAA 3 cut(s) 222, 288, 543
SatI GCNGC 3 cut(s) 183, 330, 387
Sau3AI GATC 3 cut(s) 276, 808, 915
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 351, 420
SduI GDGCHC 4 cut(s) 85, 119, 577, 743
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 967
Sfr274I CTCGAG 1 cut(s) 823
SfuI TTCGAA 1 cut(s) 935
SlaI CTCGAG 1 cut(s) 823
SmlI CTYRAG 2 cut(s) 659, 823
SmoI CTYRAG 2 cut(s) 659, 823
SpeI ACTAGT 1 cut(s) 856
Sse9I AATT 5 cut(s) 132, 312, 524, 763, 982
SsiI CCGC 3 cut(s) 330, 387, 698
SspMI CTAG 4 cut(s) 125, 297, 857, 945
SstI GAGCTC 1 cut(s) 577
StyD4I CCNGG 2 cut(s) 349, 418
TaaI ACNGT 4 cut(s) 46, 473, 617, 691
TaiI ACGT 1 cut(s) 558
TaqI TCGA 3 cut(s) 756, 824, 935
TasI AATT 5 cut(s) 132, 312, 524, 763, 982
TauI GCSGC 2 cut(s) 332, 389
TfiI GAWTC 1 cut(s) 814
Tru1I TTAA 3 cut(s) 222, 288, 543
Tru9I TTAA 3 cut(s) 222, 288, 543
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 2 cut(s) 392, 827
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 2 cut(s) 392, 827
TspDTI ATGAA 2 cut(s) 17, 191
TspGWI ACGGA 4 cut(s) 128, 190, 388, 761
TspRI CASTG 1 cut(s) 478
XapI RAATTY 1 cut(s) 524
XceI RCATGY 3 cut(s) 35, 348, 909
XhoI CTCGAG 1 cut(s) 823
XmnI GAANNNNTTC 1 cut(s) 931
XspI CTAG 4 cut(s) 125, 297, 857, 945
ZraI GACGTC 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.