FvH4_3g44351

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009944
Physical Location & Seq
Forward (+)
36992521 .. 36995192
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44351.t1

Sequence Viewer

Length: 1008 bp
ATGTTTAGGTCTTTCATCAGCAGTTTCATTCGTCTTCGTCGTAGTTTTTTGGTAGTGATGATCTTATTTGCATTTAGTTCGGCTGTGAAAGCACAGTTGAGTACGGATTTCTACCAGCAATCATGTCCAAAACTTCTCCAAATCGTCCGGAAAGAGGTACAGAATGCTATCAAATCCGAAATGAGAATGGCTGCTTCTTTGCTTCGACTTCACTTCCACGACTGCTTTGTCAACGGTTGTGATGCGTCACTACTACTCGATCTAACTGATGGCGAGAAGTCTGCCATCCCAAACGTGAATTCGGCGAGAGGGTTTGAAGTTATCGACGCAATCAAGAGCTCCGTGGAGAGTTCTTGCAGTGGAGTTGTTTCCTGTGCTGATATACTAACTATAGCTGCGCGAGATTCTGTGGTCTTAAGTGGAGGAAATTCATGGAAAGTTTTGCTGGGAAGAAGAGACGGGTTAGTGGCAAACCAGACAGGAGCAAATGCTGGACTTCCTTCTCCATTTGACACACTGGATGCCATAATTTCCAAGTTCGCCAATGTAGGCCTAAATGTCACAGACGTAGTGTCCTTATCAGGAGCTCACACAATTGGGTTAGCAACCTGTCGAACCTTCAGCAACAGATTGTTCAACTTCTCAGGAACAGGTGCACCAGACAGCACATTAGATTCAACTATGGCAACTGATCTGCAGAACCAATGCCCTACGACGAGCGACGGATTCAATACCGCGCCTCTTGATCGGAACTCGAGAGATCTATTCGACAACCATTACTTTCAGAACTTGCTCACCGGAAAGGGCCTTCTCAGTTCTGATCAGCTGTTATTTTCCGGTGATGCAGCCGAAACAACAAGTACCAAAAGCTTGGTCCAAAGCTATAGCTCTAATTCCAACCTTTTCCTGACAGATTTTGCTAATTCTATGATCAAAATGGGGAGTATAAGTCCACTCACTGGGTCTGCTGGAGAGATAAGACAGAACTGCAGGGTTCTTAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

336

Amino Acids

36.0

Weight (kDa)

6.42

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 297 3.3e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 959
AccII CGCG 2 cut(s) 400, 737
AccIII TCCGGA 1 cut(s) 147
AciI CCGC 1 cut(s) 735
AcsI RAATTY 2 cut(s) 298, 427
AcuI CTGAAG 1 cut(s) 604
AfaI GTAC 3 cut(s) 103, 159, 862
AfiI CCNNNNNNNGG 2 cut(s) 154, 959
AflII CTTAAG 1 cut(s) 415
AgsI TTSAA 4 cut(s) 317, 637, 678, 730
AhdI GACNNNNNGTC 1 cut(s) 571
AjuI GAANNNNNNNTTGG 2 cut(s) 283, 315
AluBI AGCT 7 cut(s) 339, 395, 587, 826, 870, 882, 888
AluI AGCT 7 cut(s) 339, 395, 587, 826, 870, 882, 888
Alw21I GWGCWC 3 cut(s) 341, 589, 658
Alw26I GTCTC 1 cut(s) 450
Alw44I GTGCAC 1 cut(s) 654
Ama87I CYCGRG 1 cut(s) 754
Aor13HI TCCGGA 1 cut(s) 147
AoxI GGCC 2 cut(s) 550, 805
ApaLI GTGCAC 1 cut(s) 654
ApeKI GCWGC 3 cut(s) 191, 395, 845
ApoI RAATTY 2 cut(s) 298, 427
ArsI GACNNNNNNTTYG 2 cut(s) 858, 890
AspLEI GCGC 2 cut(s) 400, 739
AspS9I GGNCC 2 cut(s) 805, 874
AsuHPI GGTGA 2 cut(s) 787, 851
AvaI CYCGRG 1 cut(s) 754
AvaII GGWCC 1 cut(s) 874
BaeGI GKGCMC 1 cut(s) 658
BanII GRGCYC 2 cut(s) 341, 589
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 3 cut(s) 341, 589, 658
BbvI GCAGC 3 cut(s) 178, 382, 857
BccI CCATC 2 cut(s) 263, 293
BcgI CGANNNNNNTGC 4 cut(s) 60, 94, 263, 297
BclI TGATCA 2 cut(s) 820, 930
BcoDI GTCTC 1 cut(s) 450
BfmI CTRYAG 4 cut(s) 390, 695, 883, 988
BfrI CTTAAG 1 cut(s) 415
BglII AGATCT 1 cut(s) 760
BisI GCNGC 3 cut(s) 192, 396, 846
BlsI GCNGC 3 cut(s) 193, 397, 847
Bme18I GGWCC 1 cut(s) 874
BmeRI GACNNNNNGTC 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 754
BmgT120I GGNCC 2 cut(s) 805, 874
BmrI ACTGGG 1 cut(s) 969
BmsI GCATC 3 cut(s) 232, 511, 832
BmuI ACTGGG 1 cut(s) 969
BpiI GAAGAC 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 990
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 3 cut(s) 147, 797, 836
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 959
Bse1I ACTGG 2 cut(s) 522, 964
BseAI TCCGGA 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 2 cut(s) 285, 526
BseLI CCNNNNNNNGG 2 cut(s) 154, 959
BseMII CTCAG 2 cut(s) 657, 826
BseNI ACTGG 2 cut(s) 522, 964
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 3 cut(s) 178, 382, 857
BseYI CCCAGC 1 cut(s) 445
Bsh1236I CGCG 2 cut(s) 400, 737
BshFI GGCC 2 cut(s) 552, 807
BsiHKAI GWGCWC 3 cut(s) 341, 589, 658
BsiHKCI CYCGRG 1 cut(s) 754
BsiSI CCGG 3 cut(s) 148, 798, 837
BslI CCNNNNNNNGG 2 cut(s) 154, 959
BsmAI GTCTC 1 cut(s) 450
BsmBI CGTCTC 1 cut(s) 450
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 2 cut(s) 552, 807
BsoBI CYCGRG 1 cut(s) 754
Bsp1286I GDGCHC 3 cut(s) 341, 589, 658
Bsp13I TCCGGA 1 cut(s) 147
Bsp143I GATC 7 cut(s) 60, 259, 691, 745, 760, 820, 930
BspACI CCGC 1 cut(s) 735
BspANI GGCC 2 cut(s) 552, 807
BspCNI CTCAG 2 cut(s) 656, 825
BspEI TCCGGA 1 cut(s) 147
BspFNI CGCG 2 cut(s) 400, 737
BspMAI CTGCAG 2 cut(s) 699, 992
BspTI CTTAAG 1 cut(s) 415
BsrI ACTGG 2 cut(s) 522, 964
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 7 cut(s) 60, 259, 691, 745, 760, 820, 930
Bst4CI ACNGT 2 cut(s) 96, 236
Bst6I CTCTTC 1 cut(s) 448
BstAFI CTTAAG 1 cut(s) 415
BstDEI CTNAG 2 cut(s) 643, 812
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 285, 526
BstFNI CGCG 2 cut(s) 400, 737
BstHHI GCGC 2 cut(s) 400, 739
BstKTI GATC 7 cut(s) 63, 262, 694, 748, 763, 823, 933
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 7 cut(s) 60, 259, 691, 745, 760, 820, 930
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstSFI CTRYAG 4 cut(s) 390, 695, 883, 988
BstSLI GKGCMC 1 cut(s) 658
BstUI CGCG 2 cut(s) 400, 737
BstV1I GCAGC 3 cut(s) 178, 382, 857
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 760
BstXI CCANNNNNNTGG 1 cut(s) 871
BstYI RGATCY 1 cut(s) 760
BsuRI GGCC 2 cut(s) 552, 807
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 285, 526
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 3 cut(s) 364, 515, 957
CfoI GCGC 2 cut(s) 400, 739
Cfr13I GGNCC 2 cut(s) 805, 874
CseI GACGC 2 cut(s) 234, 335
Csp6I GTAC 3 cut(s) 102, 158, 861
CviAII CATG 2 cut(s) 123, 432
CviQI GTAC 3 cut(s) 102, 158, 861
DdeI CTNAG 2 cut(s) 643, 812
DpnI GATC 7 cut(s) 62, 261, 693, 747, 762, 822, 932
DpnII GATC 7 cut(s) 60, 259, 691, 745, 760, 820, 930
DrdI GACNNNNNNGTC 1 cut(s) 227
DriI GACNNNNNGTC 1 cut(s) 571
DseDI GACNNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 448
Eam1105I GACNNNNNGTC 1 cut(s) 571
EarI CTCTTC 1 cut(s) 448
Ecl136II GAGCTC 2 cut(s) 339, 587
Eco147I AGGCCT 1 cut(s) 552
Eco24I GRGCYC 2 cut(s) 341, 589
Eco47I GGWCC 1 cut(s) 874
Eco53kI GAGCTC 2 cut(s) 339, 587
Eco57I CTGAAG 1 cut(s) 604
Eco88I CYCGRG 1 cut(s) 754
EcoICRI GAGCTC 2 cut(s) 339, 587
EcoO109I RGGNCCY 1 cut(s) 805
EcoRI GAATTC 1 cut(s) 298
EcoT38I GRGCYC 2 cut(s) 341, 589
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 2 cut(s) 126, 435
FaiI YATR 9 cut(s) 124, 383, 392, 433, 527, 683, 885, 929, 947
FatI CATG 2 cut(s) 122, 431
FbaI TGATCA 2 cut(s) 820, 930
Fnu4HI GCNGC 3 cut(s) 192, 396, 846
FokI GGATG 2 cut(s) 272, 533
FriOI GRGCYC 2 cut(s) 341, 589
Fsp4HI GCNGC 3 cut(s) 192, 396, 846
GlaI GCGC 2 cut(s) 399, 738
GluI GCNGC 3 cut(s) 192, 396, 846
GsaI CCCAGC 1 cut(s) 449
GsuI CTGGAG 1 cut(s) 990
HaeIII GGCC 2 cut(s) 552, 807
HapII CCGG 3 cut(s) 148, 798, 837
HgaI GACGC 2 cut(s) 234, 335
HhaI GCGC 2 cut(s) 400, 739
Hin1II CATG 2 cut(s) 126, 435
Hin6I GCGC 2 cut(s) 398, 737
HinP1I GCGC 2 cut(s) 398, 737
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 868
HinfI GANTC 3 cut(s) 404, 674, 726
HpaII CCGG 3 cut(s) 148, 798, 837
HphI GGTGA 2 cut(s) 787, 851
Hpy166II GTNNAC 3 cut(s) 232, 656, 953
Hpy188I TCNGA 4 cut(s) 178, 750, 786, 820
Hpy188III TCNNGA 8 cut(s) 148, 334, 582, 645, 743, 756, 907, 1005
Hpy8I GTNNAC 3 cut(s) 232, 656, 953
Hpy99I CGWCG 4 cut(s) 42, 329, 718, 725
HpyAV CCTTC 3 cut(s) 510, 628, 818
HpyCH4III ACNGT 2 cut(s) 96, 236
HpyCH4IV ACGT 2 cut(s) 294, 567
HpyCH4V TGCA 6 cut(s) 71, 357, 656, 697, 845, 990
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 643, 812
HpySE526I ACGT 2 cut(s) 294, 567
Hsp92II CATG 2 cut(s) 126, 435
HspAI GCGC 2 cut(s) 398, 737
Kpn2I TCCGGA 1 cut(s) 147
Ksp22I TGATCA 2 cut(s) 820, 930
Kzo9I GATC 7 cut(s) 60, 259, 691, 745, 760, 820, 930
LmnI GCTCC 3 cut(s) 344, 482, 584
Lsp1109I GCAGC 3 cut(s) 178, 382, 857
LweI GCATC 3 cut(s) 232, 511, 832
MaeII ACGT 2 cut(s) 294, 567
MaeIII GTNAC 2 cut(s) 246, 559
MalI GATC 7 cut(s) 62, 261, 693, 747, 762, 822, 932
MboI GATC 7 cut(s) 60, 259, 691, 745, 760, 820, 930
MboII GAAGA 3 cut(s) 26, 462, 465
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 760
MhlI GDGCHC 3 cut(s) 341, 589, 658
MluCI AATT 7 cut(s) 298, 427, 528, 594, 892, 922, 1000
MmeI TCCRAC 1 cut(s) 921
MnlI CCTC 4 cut(s) 148, 302, 416, 750
MroI TCCGGA 1 cut(s) 147
MseI TTAA 2 cut(s) 416, 999
MspA1I CMGCKG 1 cut(s) 826
MspCI CTTAAG 1 cut(s) 415
MspI CCGG 3 cut(s) 148, 798, 837
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 1 cut(s) 169
MvnI CGCG 2 cut(s) 400, 737
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 7 cut(s) 60, 259, 691, 745, 760, 820, 930
NlaIII CATG 2 cut(s) 126, 435
NmuCI GTSAC 2 cut(s) 246, 559
PaeR7I CTCGAG 1 cut(s) 754
PceI AGGCCT 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 37
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 3 cut(s) 404, 674, 726
PflMI CCANNNNNTGG 1 cut(s) 959
PkrI GCNGC 3 cut(s) 193, 397, 847
Psp124BI GAGCTC 2 cut(s) 341, 589
PspFI CCCAGC 1 cut(s) 445
PspPI GGNCC 2 cut(s) 805, 874
PstI CTGCAG 2 cut(s) 699, 992
PsuI RGATCY 1 cut(s) 760
PvuII CAGCTG 1 cut(s) 826
RsaI GTAC 3 cut(s) 103, 159, 862
RsaNI GTAC 3 cut(s) 102, 158, 861
SacI GAGCTC 2 cut(s) 341, 589
SaqAI TTAA 2 cut(s) 416, 999
SatI GCNGC 3 cut(s) 192, 396, 846
Sau3AI GATC 7 cut(s) 60, 259, 691, 745, 760, 820, 930
Sau96I GGNCC 2 cut(s) 805, 874
SduI GDGCHC 3 cut(s) 341, 589, 658
SfaNI GCATC 3 cut(s) 232, 511, 832
SfcI CTRYAG 4 cut(s) 390, 695, 883, 988
Sfr274I CTCGAG 1 cut(s) 754
SinI GGWCC 1 cut(s) 874
SlaI CTCGAG 1 cut(s) 754
SmlI CTYRAG 2 cut(s) 415, 754
SmoI CTYRAG 2 cut(s) 415, 754
Sse9I AATT 7 cut(s) 298, 427, 528, 594, 892, 922, 1000
SseBI AGGCCT 1 cut(s) 552
SsiI CCGC 1 cut(s) 735
SstI GAGCTC 2 cut(s) 341, 589
StuI AGGCCT 1 cut(s) 552
TaaI ACNGT 2 cut(s) 96, 236
TaiI ACGT 2 cut(s) 297, 570
TaqI TCGA 6 cut(s) 205, 258, 324, 613, 755, 768
TasI AATT 7 cut(s) 298, 427, 528, 594, 892, 922, 1000
TfiI GAWTC 3 cut(s) 404, 674, 726
Tru1I TTAA 2 cut(s) 416, 999
Tru9I TTAA 2 cut(s) 416, 999
TscAI CASTG 3 cut(s) 364, 522, 964
TseFI GTSAC 2 cut(s) 246, 559
TseI GCWGC 3 cut(s) 191, 395, 845
Tsp45I GTSAC 2 cut(s) 246, 559
TspDTI ATGAA 3 cut(s) 4, 16, 420
TspGWI ACGGA 3 cut(s) 119, 331, 738
TspRI CASTG 3 cut(s) 364, 522, 964
Van91I CCANNNNNTGG 1 cut(s) 959
Vha464I CTTAAG 1 cut(s) 415
VneI GTGCAC 1 cut(s) 654
VpaK11BI GGWCC 1 cut(s) 874
XapI RAATTY 2 cut(s) 298, 427
XhoI CTCGAG 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.