RLG00000012515

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009944
Physical Location & Seq
Reverse (-)
19446762 .. 19448215
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012515

Sequence Viewer

Length: 639 bp
ATGGTGCCACTACACTTGCAAAAGCAGGAGCCTAAGACTCGCTCCCAGCATGACAAGAATAATCACAAAGTTGTGCGTCAAGAGTATAGAGCGGTTTCGCATTCTTCCAATGAAGAAGCTGATCCTTCAGTTGTTCAAATTGGTGCAGCAGTGGCGAATCAGGTTGTTGATGAACAAATTGTTGCTTCGGTGGTTAAGGCCAAGCAGGCTGCTGTCCAACGTATTGCTACTGACGTTGTAGTTCAGGAACCCTTGATTCAGGATGACACGGTTGTTAATACATCTCAGGTTGTAACGAGTCCACTTAATGACAATCCATATGCTGTTTTGGTCAATGAAGCTTTTGAAAGAGCTGCTAATGAACATATTGTGCGCTTAGCTGATATTGTGATGAACGAGTCCAGTGAAAGCATGTTACTAAAGGAATGTCATCTGGTGGAAGGATTGAAACATGTTATTGAAGGATTGTCATCTGGGAGTGATGTTGCTCTTGATGACAATACAATGGGGCCGGCCACAAGTTCTTCCTTACAACGAGATGATCAAGGGGCTAGTCCTCTTGGCAATGGAATTACTAATCTGCTGGATGATGGCATGACGATGGTTCTCTCCAAATCCCGAGTTAAGAAACTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

22.98

Weight (kDa)

5.21

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 92
AciI CCGC 1 cut(s) 92
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 513
AcuI CTGAAG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 451
AgsI TTSAA 4 cut(s) 137, 347, 448, 461
AluBI AGCT 4 cut(s) 119, 341, 353, 380
AluI AGCT 4 cut(s) 119, 341, 353, 380
AlwI GGATC 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 618
AoxI GGCC 3 cut(s) 198, 509, 513
ApeKI GCWGC 3 cut(s) 146, 209, 353
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 618
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 3 cut(s) 158, 196, 340
BccI CCATC 2 cut(s) 584, 595
BclI TGATCA 1 cut(s) 541
BfaI CTAG 1 cut(s) 552
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 3 cut(s) 147, 210, 354
BlpI GCTNAGC 1 cut(s) 376
BlsI GCNGC 3 cut(s) 148, 211, 355
BmeT110I CYCGRG 1 cut(s) 618
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 4 cut(s) 6, 30, 249, 510
Bpu1102I GCTNAGC 1 cut(s) 376
BsaBI GATNNNNATC 1 cut(s) 469
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 402
Bse3DI GCAATG 1 cut(s) 571
Bse8I GATNNNNATC 1 cut(s) 469
BseGI GGATG 2 cut(s) 268, 592
BseJI GATNNNNATC 1 cut(s) 469
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 402
BseXI GCAGC 3 cut(s) 158, 196, 340
BseYI CCCAGC 1 cut(s) 45
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 3 cut(s) 200, 511, 515
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 1 cut(s) 512
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 3 cut(s) 200, 511, 515
BsoBI CYCGRG 1 cut(s) 618
Bsp143I GATC 2 cut(s) 121, 541
Bsp1720I GCTNAGC 1 cut(s) 376
BspACI CCGC 1 cut(s) 92
BspANI GGCC 3 cut(s) 200, 511, 515
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 4 cut(s) 6, 30, 249, 510
BspPI GGATC 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 571
BsrFI RCCGGY 1 cut(s) 511
BsrI ACTGG 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 511
BssMI GATC 2 cut(s) 121, 541
Bst4CI ACNGT 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 207, 513
BstDEI CTNAG 3 cut(s) 33, 285, 376
BstF5I GGATG 2 cut(s) 268, 592
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 2 cut(s) 124, 544
BstMBI GATC 2 cut(s) 121, 541
BstMWI GCNNNNNNNGC 2 cut(s) 152, 206
BstNSI RCATGY 2 cut(s) 415, 455
BstV1I GCAGC 3 cut(s) 158, 196, 340
BsuRI GGCC 3 cut(s) 200, 511, 515
BtsCI GGATG 2 cut(s) 268, 592
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 156, 409
Cac8I GCNNGC 2 cut(s) 207, 513
CfoI GCGC 1 cut(s) 375
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 1 cut(s) 509
CseI GACGC 1 cut(s) 65
CspCI CAANNNNNGTGG 1 cut(s) 32
CviAII CATG 4 cut(s) 50, 412, 452, 595
DdeI CTNAG 3 cut(s) 33, 285, 376
DpnI GATC 2 cut(s) 123, 543
DpnII GATC 2 cut(s) 121, 541
EaeI YGGCCR 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 618
FaeI CATG 4 cut(s) 53, 415, 455, 598
FaiI YATR 8 cut(s) 51, 87, 319, 321, 366, 413, 453, 596
FatI CATG 4 cut(s) 49, 411, 451, 594
FauNDI CATATG 1 cut(s) 319
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 3 cut(s) 147, 210, 354
FokI GGATG 2 cut(s) 275, 599
FseI GGCCGGCC 1 cut(s) 515
Fsp4HI GCNGC 3 cut(s) 147, 210, 354
FspBI CTAG 1 cut(s) 552
GlaI GCGC 1 cut(s) 374
GluI GCNGC 3 cut(s) 147, 210, 354
GsaI CCCAGC 1 cut(s) 49
HaeIII GGCC 3 cut(s) 200, 511, 515
HapII CCGG 1 cut(s) 512
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 375
Hin1II CATG 4 cut(s) 53, 415, 455, 598
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 5 cut(s) 37, 157, 256, 298, 398
HpaII CCGG 1 cut(s) 512
Hpy166II GTNNAC 1 cut(s) 302
Hpy188III TCNNGA 5 cut(s) 80, 245, 260, 491, 618
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 3 cut(s) 135, 434, 455
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 2 cut(s) 220, 234
HpyCH4V TGCA 2 cut(s) 19, 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 206
HpyF3I CTNAG 3 cut(s) 33, 285, 376
HpySE526I ACGT 2 cut(s) 220, 234
Hsp92II CATG 4 cut(s) 53, 415, 455, 598
HspAI GCGC 1 cut(s) 373
KroI GCCGGC 1 cut(s) 511
KroNI GCCGGC 1 cut(s) 513
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 2 cut(s) 121, 541
LmnI GCTCC 2 cut(s) 28, 47
Lsp1109I GCAGC 3 cut(s) 158, 196, 340
MaeI CTAG 1 cut(s) 552
MaeII ACGT 2 cut(s) 220, 234
MaeIII GTNAC 2 cut(s) 292, 414
MalI GATC 2 cut(s) 123, 543
MbiI CCGCTC 1 cut(s) 92
MboI GATC 2 cut(s) 121, 541
MboII GAAGA 3 cut(s) 96, 125, 516
MluCI AATT 3 cut(s) 138, 177, 570
MlyI GAGTC 3 cut(s) 31, 307, 407
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 1 cut(s) 567
MroNI GCCGGC 1 cut(s) 511
MseI TTAA 4 cut(s) 195, 276, 306, 624
MslI CAYNNNNRTG 1 cut(s) 599
MspI CCGG 1 cut(s) 512
Mva1269I GAATGC 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 152, 206
NaeI GCCGGC 1 cut(s) 513
NdeI CATATG 1 cut(s) 319
NdeII GATC 2 cut(s) 121, 541
NgoMIV GCCGGC 1 cut(s) 511
NlaIII CATG 4 cut(s) 53, 415, 455, 598
NlaIV GGNNCC 4 cut(s) 6, 30, 249, 510
NspI RCATGY 2 cut(s) 415, 455
PciI ACATGT 1 cut(s) 451
PctI GAATGC 1 cut(s) 100
PdiI GCCGGC 1 cut(s) 513
PfeI GAWTC 2 cut(s) 157, 256
PkrI GCNGC 3 cut(s) 148, 211, 355
PleI GAGTC 3 cut(s) 31, 306, 406
PpsI GAGTC 3 cut(s) 31, 306, 406
PscI ACATGT 1 cut(s) 451
PspFI CCCAGC 1 cut(s) 45
PspN4I GGNNCC 4 cut(s) 6, 30, 249, 510
PspPI GGNCC 1 cut(s) 509
RigI GGCCGGCC 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 599
SaqAI TTAA 4 cut(s) 195, 276, 306, 624
SatI GCNGC 3 cut(s) 147, 210, 354
Sau3AI GATC 2 cut(s) 121, 541
Sau96I GGNCC 1 cut(s) 509
SchI GAGTC 3 cut(s) 31, 307, 407
SetI ASST 8 cut(s) 121, 165, 223, 237, 291, 343, 355, 382
SmiMI CAYNNNNRTG 1 cut(s) 599
Sse9I AATT 3 cut(s) 138, 177, 570
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 552
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 2 cut(s) 223, 237
TasI AATT 3 cut(s) 138, 177, 570
TfiI GAWTC 2 cut(s) 157, 256
Tru1I TTAA 4 cut(s) 195, 276, 306, 624
Tru9I TTAA 4 cut(s) 195, 276, 306, 624
TscAI CASTG 2 cut(s) 156, 409
TseI GCWGC 3 cut(s) 146, 209, 353
TspDTI ATGAA 5 cut(s) 126, 186, 351, 375, 407
TspRI CASTG 2 cut(s) 156, 409
XceI RCATGY 2 cut(s) 415, 455
XspI CTAG 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.