MD03G1014500.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0009944
Physical Location & Seq
Reverse (-)
1155773 .. 1158026
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1014500.v1.1.491

Sequence Viewer

Length: 996 bp
ATGACAAGGTCACCGATTAATTTTAGCCGTCGTTACTCTTTGGTACTGATCACGTTCTTTGCCTTTTGTTTTGTTGCGAAGGCCCAATTAAGTACAGATTTCTACAAGGCAACATGTCCGGATCTTTTCAAAATTGTCCGAAGAGAGGTTCAGAATGCTGTCAAGTTTGAAATGCGAATGGCTGCTTCTTTGCTTCGGCTTCACTTCCATGACTGCTTAGTGAATGGTTGTGATGCGTCACTACTACTGGATGGAACTGGCAGTGAGAAGGATGCCGGACCAAATTTGAATTCAGCAAGAGGATTTGAAGTTGTTGACAGAATCAAGAGCTCTGTGGAAAGCTCATGCAGTGGAGTTGTGTCGTGTGCTGATATACTAGCCATAGCTGCCAGAGATTCTGTGCTCTTAAGTGGAGGAACTTCATGGAAAGTTCTACTTGGAAGAAGAGATGGTCTAGTGGCAAATCAGACAGGAGCAAATAGGGCACTTCCTGCACCATTTGAAGCCCTGGACAGCATCATTTCCAAGTTTGCCGCTGTCGGCCTAAATGTCAATGACGTTGTGTCCTTATCAGGCGCCCATACAATTGGGTTGGCAAGGTGTGGCACTTTCAGAGATCGACTCTTCAACTTCTCAGGAACAGGTGCTCCTGACATTACGTTGGAACAAAGCATGTTAACTGATCTACAGAACCTGTGTCCGCTAACTGCTGATGGAAGCATTACCGCGCCTTTTGATCGGAAGTCAGCTGATCTATTTGACAACCATTACTTTCAAAACTTGATTAACGGGAAGGGCCTCATAAGTTCGGATCAAATTCTATTTTCAAGTGATGCAGCTGTGACAACAGGTACCAAAAGTTTGGTCCAAAGCTATAACACAGATATTAATCGTTTCTTTGCTGATTTTGCTAATTCTATGATCAAGATGGGGAATATTACTCTTACTGGGTCTGCTGGAGAGATCAGAAAGAACTGTAGGGCTGTTAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

332

Amino Acids

35.67

Weight (kDa)

8.06

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 293 2.1e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 851
AccB1I GGYRCC 2 cut(s) 575, 851
AccII CGCG 1 cut(s) 728
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 3 cut(s) 534, 701, 726
AclWI GGATC 2 cut(s) 129, 819
AcsI RAATTY 3 cut(s) 283, 289, 816
AcyI GRCGYC 1 cut(s) 576
AfaI GTAC 3 cut(s) 45, 94, 853
AfiI CCNNNNNNNGG 1 cut(s) 145
AflII CTTAAG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 8 cut(s) 130, 170, 289, 308, 503, 628, 776, 828
AhdI GACNNNNNGTC 1 cut(s) 562
AjnI CCWGG 1 cut(s) 507
AjuI GAANNNNNNNTTGG 2 cut(s) 274, 306
AloI GAACNNNNNNTCC 2 cut(s) 631, 663
AluBI AGCT 6 cut(s) 330, 342, 386, 749, 839, 873
AluI AGCT 6 cut(s) 330, 342, 386, 749, 839, 873
Alw21I GWGCWC 3 cut(s) 332, 405, 649
AlwI GGATC 2 cut(s) 129, 819
AlwNI CAGNNNCTG 1 cut(s) 694
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 3 cut(s) 81, 541, 796
ApeKI GCWGC 3 cut(s) 182, 386, 836
ApoI RAATTY 3 cut(s) 283, 289, 816
ArsI GACNNNNNNTTYG 2 cut(s) 849, 881
AseI ATTAAT 2 cut(s) 18, 888
Asp718I GGTACC 1 cut(s) 851
AspLEI GCGC 2 cut(s) 578, 730
AspS9I GGNCC 4 cut(s) 82, 278, 796, 865
AsuHPI GGTGA 1 cut(s) 3
AvaII GGWCC 2 cut(s) 278, 865
BaeGI GKGCMC 1 cut(s) 487
BanI GGYRCC 2 cut(s) 575, 851
BanII GRGCYC 1 cut(s) 332
Bbv12I GWGCWC 3 cut(s) 332, 405, 649
BbvI GCAGC 3 cut(s) 169, 373, 848
BccI CCATC 4 cut(s) 245, 443, 707, 922
BceAI ACGGC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 509
BclI TGATCA 2 cut(s) 48, 921
BfaI CTAG 2 cut(s) 377, 455
BfmI CTRYAG 2 cut(s) 686, 976
BfoI RGCGCY 1 cut(s) 579
BfrI CTTAAG 1 cut(s) 406
BisI GCNGC 4 cut(s) 183, 387, 534, 837
BlsI GCNGC 4 cut(s) 184, 388, 535, 838
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 2 cut(s) 278, 865
BmeRI GACNNNNNGTC 1 cut(s) 562
BmgT120I GGNCC 4 cut(s) 82, 278, 796, 865
BmiI GGNNCC 2 cut(s) 577, 853
BmrFI CCNGG 1 cut(s) 509
BmrI ACTGGG 1 cut(s) 957
BmsI GCATC 4 cut(s) 223, 262, 525, 823
BmuI ACTGGG 1 cut(s) 957
BplI GAGNNNNNCTC 2 cut(s) 606, 638
BpmI CTGGAG 1 cut(s) 978
BsaBI GATNNNNATC 1 cut(s) 888
BsaHI GRCGYC 1 cut(s) 576
BsaJI CCNNGG 1 cut(s) 507
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 3 cut(s) 252, 262, 952
Bse8I GATNNNNATC 1 cut(s) 888
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 2 cut(s) 256, 277
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 3 cut(s) 252, 262, 952
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 3 cut(s) 169, 373, 848
BsgI GTGCAG 1 cut(s) 477
Bsh1236I CGCG 1 cut(s) 728
BshFI GGCC 3 cut(s) 83, 543, 798
BshNI GGYRCC 2 cut(s) 575, 851
BsiHKAI GWGCWC 3 cut(s) 332, 405, 649
BsiSI CCGG 2 cut(s) 119, 276
BslI CCNNNNNNNGG 1 cut(s) 145
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 3 cut(s) 83, 543, 798
Bsp1286I GDGCHC 4 cut(s) 332, 405, 487, 649
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 9 cut(s) 48, 121, 616, 682, 736, 751, 811, 921, 963
BspACI CCGC 3 cut(s) 534, 701, 726
BspANI GGCC 3 cut(s) 83, 543, 798
BspCNI CTCAG 1 cut(s) 647
BspEI TCCGGA 1 cut(s) 118
BspFNI CGCG 1 cut(s) 728
BspLI GGNNCC 2 cut(s) 577, 853
BspPI GGATC 2 cut(s) 129, 819
BspT107I GGYRCC 2 cut(s) 575, 851
BspTI CTTAAG 1 cut(s) 406
BsrI ACTGG 3 cut(s) 252, 262, 952
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 9 cut(s) 48, 121, 616, 682, 736, 751, 811, 921, 963
BssNI GRCGYC 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 1 cut(s) 977
Bst6I CTCTTC 3 cut(s) 136, 439, 629
BstACI GRCGYC 1 cut(s) 576
BstAFI CTTAAG 1 cut(s) 406
BstAPI GCANNNNNTGC 1 cut(s) 491
BstDEI CTNAG 2 cut(s) 217, 634
BstEII GGTNACC 1 cut(s) 9
BstF5I GGATG 2 cut(s) 256, 277
BstFNI CGCG 1 cut(s) 728
BstH2I RGCGCY 1 cut(s) 579
BstHHI GCGC 2 cut(s) 578, 730
BstKTI GATC 9 cut(s) 51, 124, 619, 685, 739, 754, 814, 924, 966
BstMBI GATC 9 cut(s) 48, 121, 616, 682, 736, 751, 811, 921, 963
BstMWI GCNNNNNNNGC 5 cut(s) 386, 482, 491, 908, 989
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 2 cut(s) 117, 676
BstPI GGTNACC 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 2 cut(s) 686, 976
BstSLI GKGCMC 1 cut(s) 487
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 3 cut(s) 169, 373, 848
BstX2I RGATCY 1 cut(s) 121
BstXI CCANNNNNNTGG 2 cut(s) 587, 862
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 3 cut(s) 83, 543, 798
BtsCI GGATG 2 cut(s) 256, 277
BtsI GCAGTG 2 cut(s) 268, 355
BtsIMutI CAGTG 2 cut(s) 268, 355
CaiI CAGNNNCTG 1 cut(s) 694
CfoI GCGC 2 cut(s) 578, 730
Cfr13I GGNCC 4 cut(s) 82, 278, 796, 865
CseI GACGC 1 cut(s) 225
Csp6I GTAC 3 cut(s) 44, 93, 852
CviAII CATG 6 cut(s) 114, 209, 345, 423, 673, 993
CviQI GTAC 3 cut(s) 44, 93, 852
DdeI CTNAG 2 cut(s) 217, 634
DinI GGCGCC 1 cut(s) 577
DpnI GATC 9 cut(s) 50, 123, 618, 684, 738, 753, 813, 923, 965
DpnII GATC 9 cut(s) 48, 121, 616, 682, 736, 751, 811, 921, 963
DriI GACNNNNNGTC 1 cut(s) 562
Eam1104I CTCTTC 3 cut(s) 136, 439, 629
Eam1105I GACNNNNNGTC 1 cut(s) 562
EarI CTCTTC 3 cut(s) 136, 439, 629
Ecl136II GAGCTC 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 278, 865
Eco53kI GAGCTC 1 cut(s) 330
Eco91I GGTNACC 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 796
EcoO65I GGTNACC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 994
EcoT38I GRGCYC 1 cut(s) 332
EgeI GGCGCC 1 cut(s) 577
EheI GGCGCC 1 cut(s) 577
FaeI CATG 6 cut(s) 117, 212, 348, 426, 676, 996
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FatI CATG 6 cut(s) 113, 208, 344, 422, 672, 992
FbaI TGATCA 2 cut(s) 48, 921
Fnu4HI GCNGC 4 cut(s) 183, 387, 534, 837
FokI GGATG 2 cut(s) 263, 284
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 4 cut(s) 183, 387, 534, 837
FspBI CTAG 2 cut(s) 377, 455
GlaI GCGC 2 cut(s) 577, 729
GluI GCNGC 4 cut(s) 183, 387, 534, 837
GsuI CTGGAG 1 cut(s) 978
HaeII RGCGCY 1 cut(s) 579
HaeIII GGCC 3 cut(s) 83, 543, 798
HapII CCGG 2 cut(s) 119, 276
HgaI GACGC 1 cut(s) 225
HhaI GCGC 2 cut(s) 578, 730
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 6 cut(s) 117, 212, 348, 426, 676, 996
Hin6I GCGC 2 cut(s) 576, 728
HinP1I GCGC 2 cut(s) 576, 728
HincII GTYRAC 2 cut(s) 316, 678
HindII GTYRAC 2 cut(s) 316, 678
HinfI GANTC 3 cut(s) 321, 395, 621
HpaI GTTAAC 1 cut(s) 678
HpaII CCGG 2 cut(s) 119, 276
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 2 cut(s) 316, 678
Hpy188I TCNGA 7 cut(s) 140, 153, 468, 614, 741, 811, 968
Hpy188III TCNNGA 5 cut(s) 119, 325, 636, 650, 925
Hpy8I GTNNAC 2 cut(s) 316, 678
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 3 cut(s) 73, 262, 787
HpyCH4III ACNGT 1 cut(s) 977
HpyCH4IV ACGT 3 cut(s) 53, 558, 659
HpyCH4V TGCA 4 cut(s) 348, 494, 836, 992
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 482, 491, 908, 989
HpyF3I CTNAG 2 cut(s) 217, 634
HpySE526I ACGT 3 cut(s) 53, 558, 659
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 6 cut(s) 117, 212, 348, 426, 676, 996
HspAI GCGC 2 cut(s) 576, 728
KasI GGCGCC 1 cut(s) 575
Kpn2I TCCGGA 1 cut(s) 118
KpnI GGTACC 1 cut(s) 855
Ksp22I TGATCA 2 cut(s) 48, 921
KspAI GTTAAC 1 cut(s) 678
Kzo9I GATC 9 cut(s) 48, 121, 616, 682, 736, 751, 811, 921, 963
LmnI GCTCC 2 cut(s) 473, 652
Lsp1109I GCAGC 3 cut(s) 169, 373, 848
LweI GCATC 4 cut(s) 223, 262, 525, 823
MaeI CTAG 2 cut(s) 377, 455
MaeII ACGT 3 cut(s) 53, 558, 659
MaeIII GTNAC 4 cut(s) 9, 32, 237, 841
MalI GATC 9 cut(s) 50, 123, 618, 684, 738, 753, 813, 923, 965
MboI GATC 9 cut(s) 48, 121, 616, 682, 736, 751, 811, 921, 963
MboII GAAGA 4 cut(s) 153, 453, 456, 616
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 4 cut(s) 332, 405, 487, 649
MluCI AATT 8 cut(s) 19, 86, 132, 283, 289, 585, 816, 913
Mly113I GGCGCC 1 cut(s) 576
MlyI GAGTC 1 cut(s) 615
MmeI TCCRAC 1 cut(s) 642
MnlI CCTC 4 cut(s) 139, 293, 407, 809
Mph1103I ATGCAT 1 cut(s) 994
MroI TCCGGA 1 cut(s) 118
MseI TTAA 7 cut(s) 18, 89, 407, 677, 786, 888, 987
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 3 cut(s) 536, 749, 839
MspCI CTTAAG 1 cut(s) 406
MspI CCGG 2 cut(s) 119, 276
MspR9I CCNGG 1 cut(s) 509
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 5 cut(s) 386, 482, 491, 908, 989
NarI GGCGCC 1 cut(s) 576
NdeII GATC 9 cut(s) 48, 121, 616, 682, 736, 751, 811, 921, 963
NlaIII CATG 6 cut(s) 117, 212, 348, 426, 676, 996
NlaIV GGNNCC 2 cut(s) 577, 853
NmuCI GTSAC 3 cut(s) 9, 237, 841
NsiI ATGCAT 1 cut(s) 994
NspI RCATGY 2 cut(s) 117, 676
PciI ACATGT 1 cut(s) 113
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 2 cut(s) 321, 395
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 4 cut(s) 184, 388, 535, 838
PleI GAGTC 1 cut(s) 615
PluTI GGCGCC 1 cut(s) 579
PpsI GAGTC 1 cut(s) 615
PscI ACATGT 1 cut(s) 113
PshBI ATTAAT 2 cut(s) 18, 888
Psp124BI GAGCTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 507
PspEI GGTNACC 1 cut(s) 9
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 2 cut(s) 577, 853
PspPI GGNCC 4 cut(s) 82, 278, 796, 865
PstNI CAGNNNCTG 1 cut(s) 694
PsuI RGATCY 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 2 cut(s) 749, 839
RsaI GTAC 3 cut(s) 45, 94, 853
RsaNI GTAC 3 cut(s) 44, 93, 852
RseI CAYNNNNRTG 1 cut(s) 207
SacI GAGCTC 1 cut(s) 332
SaqAI TTAA 7 cut(s) 18, 89, 407, 677, 786, 888, 987
SatI GCNGC 4 cut(s) 183, 387, 534, 837
Sau3AI GATC 9 cut(s) 48, 121, 616, 682, 736, 751, 811, 921, 963
Sau96I GGNCC 4 cut(s) 82, 278, 796, 865
SchI GAGTC 1 cut(s) 615
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 4 cut(s) 332, 405, 487, 649
SfaNI GCATC 4 cut(s) 223, 262, 525, 823
SfcI CTRYAG 2 cut(s) 686, 976
SfoI GGCGCC 1 cut(s) 577
SinI GGWCC 2 cut(s) 278, 865
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 8 cut(s) 19, 86, 132, 283, 289, 585, 816, 913
SsiI CCGC 3 cut(s) 534, 701, 726
SspDI GGCGCC 1 cut(s) 575
SspI AATATT 1 cut(s) 937
SspMI CTAG 2 cut(s) 377, 455
SstI GAGCTC 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 507
TaaI ACNGT 1 cut(s) 977
TaiI ACGT 3 cut(s) 56, 561, 662
TaqI TCGA 1 cut(s) 619
TasI AATT 8 cut(s) 19, 86, 132, 283, 289, 585, 816, 913
TatI WGTACW 1 cut(s) 92
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 2 cut(s) 321, 395
Tru1I TTAA 7 cut(s) 18, 89, 407, 677, 786, 888, 987
Tru9I TTAA 7 cut(s) 18, 89, 407, 677, 786, 888, 987
TscAI CASTG 2 cut(s) 268, 355
TseFI GTSAC 3 cut(s) 9, 237, 841
TseI GCWGC 3 cut(s) 182, 386, 836
Tsp45I GTSAC 3 cut(s) 9, 237, 841
TspDTI ATGAA 1 cut(s) 411
TspRI CASTG 2 cut(s) 268, 355
Tth111I GACNNNGTC 1 cut(s) 7
Vha464I CTTAAG 1 cut(s) 406
VpaK11BI GGWCC 2 cut(s) 278, 865
VspI ATTAAT 2 cut(s) 18, 888
XapI RAATTY 3 cut(s) 283, 289, 816
XceI RCATGY 2 cut(s) 117, 676
XspI CTAG 2 cut(s) 377, 455
Zsp2I ATGCAT 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.