Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009944

Physical Location & Seq

Genomic Coordinates Reverse (-)

945049 .. 945584

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGACAAGGTCACCGATTAATTTTAGCCGTCGTTACTCTTTGGTACTGATCGATCCGTTCTTTGCCTTTTGTTTTGTTGCGAACGCCCAATTAAGTACAGATTTCTACAAGGCAACATGTCCGGATCTTTTCAAAATTGTCCGAAGAGAGGTTCAGAATGCTGCCAAGTCTGAAATGCGAATGGCTGCTTCTTTGATTCGGCTTCACTTCCATGACTGCTTTGTGAATGGTTGTGATGCGTCACTACTACTGGATGGAACTGGCAGTGAGAAGGATGCCGGACCAAATTTGAATTCAGCAAGAGGATTTGAAGTTGTTGACAGAATCAAGAGCTCTGTGGAGAGCTCATGTAGTGGAGTTGTGTCGTGTGCTGATATACTAGCCATAGCTGCCAGAGATTCTGTGCTCTTAGTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

140

Amino Acids

15.18

Weight (kDa)

6.7

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19890
fragaria_vesca	FvH4_3g44351
malus_domestica	MD03G1014500.v1.1 MD11G1015400.v1.1
prunus_persica	Prupe.6G013700_v2.0.a1 Prupe.6G013800_v2.0.a1
pyrus_communis	pycom03g01190 pycom11g01090
rosa_chinensis	RchiOBHm_Chr5g0080741
rosa_laevigata	RLG00000012515 RLG00000036890
rosa_multiflora	Rmu_sc0003177.1_g000002 Rmu_sc0003177.1_g000006
rosa_roxburghii	Rroxscaffold_1G00002690
rosa_rugosa	Rorug05G0471700
rosa_samantha	Rh5AG525300 Rh5BG547700 Rh5CG571200 Rh5DG557600 Rh5DG558900
rosa_wichuraiana	Rw5G049290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	121
AclWI	GGATC	2 cut(s)	47, 132
AcsI	RAATTY	2 cut(s)	286, 292
AfaI	GTAC	2 cut(s)	45, 97
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	3 cut(s)	133, 292, 311
AjuI	GAANNNNNNNTTGG	2 cut(s)	277, 309
AluBI	AGCT	3 cut(s)	333, 345, 389
AluI	AGCT	3 cut(s)	333, 345, 389
Alw21I	GWGCWC	3 cut(s)	335, 347, 408
AlwI	GGATC	2 cut(s)	47, 132
Aor13HI	TCCGGA	1 cut(s)	121
ApeKI	GCWGC	3 cut(s)	161, 185, 389
ApoI	RAATTY	2 cut(s)	286, 292
AseI	ATTAAT	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	3
AvaII	GGWCC	1 cut(s)	281
BanII	GRGCYC	2 cut(s)	335, 347
Bbv12I	GWGCWC	3 cut(s)	335, 347, 408
BbvI	GCAGC	3 cut(s)	148, 172, 376
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	380
BisI	GCNGC	3 cut(s)	162, 186, 390
BlsI	GCNGC	3 cut(s)	163, 187, 391
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmsI	GCATC	2 cut(s)	226, 265
Bsa29I	ATCGAT	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	255, 265
BseAI	TCCGGA	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	51
BseGI	GGATG	2 cut(s)	259, 280
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	2 cut(s)	255, 265
BseXI	GCAGC	3 cut(s)	148, 172, 376
BshVI	ATCGAT	1 cut(s)	51
BsiHKAI	GWGCWC	3 cut(s)	335, 347, 408
BsiSI	CCGG	2 cut(s)	122, 279
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	335, 347, 408
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	48, 52, 124
BspDI	ATCGAT	1 cut(s)	51
BspEI	TCCGGA	1 cut(s)	121
BspPI	GGATC	2 cut(s)	47, 132
BsrI	ACTGG	2 cut(s)	255, 265
BssMI	GATC	3 cut(s)	48, 52, 124
Bst6I	CTCTTC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	409
BstEII	GGTNACC	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	259, 280
BstKTI	GATC	3 cut(s)	51, 55, 127
BstMBI	GATC	3 cut(s)	48, 52, 124
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNSI	RCATGY	1 cut(s)	120
BstPI	GGTNACC	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	148, 172, 376
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	259, 280
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	281
ClaI	ATCGAT	1 cut(s)	51
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	44, 96
CviAII	CATG	3 cut(s)	117, 212, 348
CviJI	RGCY	7 cut(s)	27, 185, 202, 333, 345, 383, 389
CviKI_1	RGCY	7 cut(s)	27, 185, 202, 333, 345, 383, 389
CviQI	GTAC	2 cut(s)	44, 96
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	3 cut(s)	50, 54, 126
DpnII	GATC	3 cut(s)	48, 52, 124
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Ecl136II	GAGCTC	2 cut(s)	333, 345
Eco24I	GRGCYC	2 cut(s)	335, 347
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	2 cut(s)	333, 345
Eco91I	GGTNACC	1 cut(s)	9
EcoICRI	GAGCTC	2 cut(s)	333, 345
EcoO65I	GGTNACC	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	292
EcoT38I	GRGCYC	2 cut(s)	335, 347
FaeI	CATG	3 cut(s)	120, 215, 351
FaiI	YATR	5 cut(s)	118, 213, 349, 377, 386
FatI	CATG	3 cut(s)	116, 211, 347
Fnu4HI	GCNGC	3 cut(s)	162, 186, 390
FokI	GGATG	2 cut(s)	266, 287
FriOI	GRGCYC	2 cut(s)	335, 347
Fsp4HI	GCNGC	3 cut(s)	162, 186, 390
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	3 cut(s)	162, 186, 390
HapII	CCGG	2 cut(s)	122, 279
HgaI	GACGC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	120, 215, 351
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	196, 324, 398
HpaII	CCGG	2 cut(s)	122, 279
HphI	GGTGA	1 cut(s)	3
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	143, 156, 172
Hpy188III	TCNNGA	2 cut(s)	122, 328
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	1 cut(s)	409
Hsp92II	CATG	3 cut(s)	120, 215, 351
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	48, 52, 124
LpnPI	CCDG	5 cut(s)	135, 236, 246, 292, 406
Lsp1109I	GCAGC	3 cut(s)	148, 172, 376
LweI	GCATC	2 cut(s)	226, 265
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	3 cut(s)	9, 32, 240
MalI	GATC	3 cut(s)	50, 54, 126
MboI	GATC	3 cut(s)	48, 52, 124
MboII	GAAGA	1 cut(s)	156
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	3 cut(s)	335, 347, 408
MluCI	AATT	5 cut(s)	19, 89, 135, 286, 292
MnlI	CCTC	2 cut(s)	142, 296
MroI	TCCGGA	1 cut(s)	121
MseI	TTAA	3 cut(s)	18, 92, 418
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	2 cut(s)	122, 279
Mva1269I	GAATGC	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	3 cut(s)	48, 52, 124
NlaIII	CATG	3 cut(s)	120, 215, 351
NmuCI	GTSAC	2 cut(s)	9, 240
NspI	RCATGY	1 cut(s)	120
PciI	ACATGT	1 cut(s)	116
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	196, 324, 398
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	163, 187, 391
PscI	ACATGT	1 cut(s)	116
PshBI	ATTAAT	1 cut(s)	18
Psp124BI	GAGCTC	2 cut(s)	335, 347
PspEI	GGTNACC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	2 cut(s)	45, 97
RsaNI	GTAC	2 cut(s)	44, 96
RseI	CAYNNNNRTG	1 cut(s)	210
SacI	GAGCTC	2 cut(s)	335, 347
SaqAI	TTAA	3 cut(s)	18, 92, 418
SatI	GCNGC	3 cut(s)	162, 186, 390
Sau3AI	GATC	3 cut(s)	48, 52, 124
Sau96I	GGNCC	1 cut(s)	281
SduI	GDGCHC	3 cut(s)	335, 347, 408
SetI	ASST	5 cut(s)	11, 153, 335, 347, 391
SfaNI	GCATC	2 cut(s)	226, 265
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	5 cut(s)	19, 89, 135, 286, 292
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	2 cut(s)	335, 347
TaqI	TCGA	1 cut(s)	51
TasI	AATT	5 cut(s)	19, 89, 135, 286, 292
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	3 cut(s)	196, 324, 398
Tru1I	TTAA	3 cut(s)	18, 92, 418
Tru9I	TTAA	3 cut(s)	18, 92, 418
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	9, 240
TseI	GCWGC	3 cut(s)	161, 185, 389
Tsp45I	GTSAC	2 cut(s)	9, 240
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	281
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	2 cut(s)	286, 292
XceI	RCATGY	1 cut(s)	120
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.