Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009944

Physical Location & Seq

Genomic Coordinates Reverse (-)

3197130 .. 3198574

Gene Structure 1445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAAAAGGTCATTCAGCAGTTTCATTCATCTTCGTCGTTGTTTTTTGGTAGTTATGATCTTATTTGCATTGAGTTCGGTTGTGAAAGCCCAATTGAGTACGGATTTCTACCAGCAAACATGTCCAAATCTTCTCAAAATCGTCCGGACAGAGGTTCAGAATGCTATCAAATCCGAAATGCGAATGGCTGCTTCGTTGCTTCGGCTTCACTTCCACGACTGCTTTGTCAACGGTTGTGATGCGTCGATACTACTCGATTTACCTGATGGTGAGAAGTCTGCCTTTCCGAACGTGAATTCAGCGAGAGGGTTTGAAGTTATCGATGCAATCAAGAGCTCCGTGGAGAGTGCATGTAGTGGAGTTGTTTCTTGTGCTGATATACTAACCATAGCTGCCCGAGATTCTGTGGTCTTAGTAAGAGCTCATACAATTGGGTTAGCAAGGTGTGCAACTTTCAGCAACAGATTGTTCAACTTCCAAGGAACAGGTGGTCCAGACAGCACGTTAGATTCAAGTATGGCAACTGATCTACAGAACCTATGCCCTGTGACCAGCGACGGAAACAACACTGCGGTTCTTGATCGGAACTCTAGAGATTTATTCGACAACCATTACTTTCAGAACTTGCTCACCGGAAAGGGCCTTCTCAGTTCTGATCAGCTTTTAATTTCTAGTAATTTAGCCGATACAACAAGTACCAAGAGCTTGGTCCAAAGCTATAGCTCTAATTCCAACCTTTTCCTGGCAGATTTTGCTAATTCTATGATCAAAATGGGAAGTATAAGTCCACTCACCGGGTCTGCTGGAGAGATAAGAAAGAACTGCAGGGTTGTTAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

280

Amino Acids

30.36

Weight (kDa)

7.55

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	48 - 138	3.3e-34	Peroxidase
peroxidase	PF00141	133 - 243	1.3e-21	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19890
fragaria_vesca	FvH4_3g44351
malus_domestica	MD03G1014500.v1.1 MD11G1015400.v1.1
prunus_persica	Prupe.6G013700_v2.0.a1 Prupe.6G013800_v2.0.a1
pyrus_communis	pycom03g01190 pycom11g01090
rosa_chinensis	RchiOBHm_Chr5g0080741
rosa_laevigata	RLG00000012515 RLG00000036890
rosa_multiflora	Rmu_sc0003177.1_g000002 Rmu_sc0003177.1_g000006
rosa_roxburghii	Rroxscaffold_1G00002690
rosa_rugosa	Rorug05G0471700
rosa_samantha	Rh5AG525300 Rh5BG547700 Rh5CG571200 Rh5DG557600 Rh5DG558900
rosa_wichuraiana	Rw5G049290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	144
AciI	CCGC	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	2 cut(s)	100, 697
AfiI	CCNNNNNNNGG	3 cut(s)	151, 742, 794
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	314, 472, 513
AjnI	CCWGG	1 cut(s)	741
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	7 cut(s)	336, 392, 422, 661, 705, 717, 723
AluI	AGCT	7 cut(s)	336, 392, 422, 661, 705, 717, 723
Alw21I	GWGCWC	2 cut(s)	338, 424
Ama87I	CYCGRG	1 cut(s)	396
Aor13HI	TCCGGA	1 cut(s)	144
AoxI	GGCC	1 cut(s)	640
ApeKI	GCWGC	2 cut(s)	188, 392
ApoI	RAATTY	1 cut(s)	295
AspS9I	GGNCC	3 cut(s)	491, 640, 709
AsuC2I	CCSGG	1 cut(s)	796
AsuHPI	GGTGA	3 cut(s)	281, 622, 784
AvaI	CYCGRG	1 cut(s)	396
AvaII	GGWCC	2 cut(s)	491, 709
BanII	GRGCYC	2 cut(s)	338, 424
Bbv12I	GWGCWC	2 cut(s)	338, 424
BbvI	GCAGC	2 cut(s)	175, 379
BccI	CCATC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciT130I	CCWGG	1 cut(s)	743
BclI	TGATCA	2 cut(s)	655, 765
BcnI	CCSGG	1 cut(s)	796
BfaI	CTAG	2 cut(s)	591, 672
BfmI	CTRYAG	3 cut(s)	530, 718, 823
BisI	GCNGC	2 cut(s)	189, 393
BlsI	GCNGC	2 cut(s)	190, 394
Bme1390I	CCNGG	2 cut(s)	743, 796
Bme18I	GGWCC	2 cut(s)	491, 709
BmeT110I	CYCGRG	1 cut(s)	396
BmgT120I	GGNCC	3 cut(s)	491, 640, 709
BmrFI	CCNGG	2 cut(s)	743, 796
BmsI	GCATC	2 cut(s)	229, 313
BpmI	CTGGAG	1 cut(s)	825
BpuMI	CCSGG	1 cut(s)	796
Bsa29I	ATCGAT	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	339, 478
BsaWI	WCCGGW	2 cut(s)	144, 632
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 742, 794
BseAI	TCCGGA	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	743
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	339, 478
BseLI	CCNNNNNNNGG	3 cut(s)	151, 742, 794
BseMII	CTCAG	1 cut(s)	661
BseXI	GCAGC	2 cut(s)	175, 379
BshFI	GGCC	1 cut(s)	642
BshVI	ATCGAT	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	338, 424
BsiHKCI	CYCGRG	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	145, 633, 795
BslI	CCNNNNNNNGG	3 cut(s)	151, 742, 794
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	642
BsoBI	CYCGRG	1 cut(s)	396
Bsp1286I	GDGCHC	2 cut(s)	338, 424
Bsp13I	TCCGGA	1 cut(s)	144
Bsp143I	GATC	5 cut(s)	57, 526, 580, 655, 765
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	1 cut(s)	642
BspCNI	CTCAG	1 cut(s)	660
BspDI	ATCGAT	1 cut(s)	321
BspEI	TCCGGA	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	827
BssECI	CCNNGG	2 cut(s)	339, 478
BssMI	GATC	5 cut(s)	57, 526, 580, 655, 765
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	1 cut(s)	743
Bst4CI	ACNGT	1 cut(s)	233
BstAPI	GCANNNNNTGC	2 cut(s)	446, 752
BstDEI	CTNAG	2 cut(s)	412, 647
BstDSI	CCRYGG	1 cut(s)	339
BstKTI	GATC	5 cut(s)	60, 529, 583, 658, 768
BstMBI	GATC	5 cut(s)	57, 526, 580, 655, 765
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 752
BstNI	CCWGG	1 cut(s)	743
BstNSI	RCATGY	2 cut(s)	123, 354
BstSCI	CCNGG	2 cut(s)	741, 794
BstSFI	CTRYAG	3 cut(s)	530, 718, 823
BstV1I	GCAGC	2 cut(s)	175, 379
BstXI	CCANNNNNNTGG	1 cut(s)	706
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	642
BsuTUI	ATCGAT	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	567
Cfr13I	GGNCC	3 cut(s)	491, 640, 709
ClaI	ATCGAT	1 cut(s)	321
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	99, 696
CviAII	CATG	2 cut(s)	120, 351
CviQI	GTAC	2 cut(s)	99, 696
DdeI	CTNAG	2 cut(s)	412, 647
DpnI	GATC	5 cut(s)	59, 528, 582, 657, 767
DpnII	GATC	5 cut(s)	57, 526, 580, 655, 765
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Ecl136II	GAGCTC	2 cut(s)	336, 422
Eco130I	CCWWGG	1 cut(s)	478
Eco24I	GRGCYC	2 cut(s)	338, 424
Eco47I	GGWCC	2 cut(s)	491, 709
Eco53kI	GAGCTC	2 cut(s)	336, 422
Eco88I	CYCGRG	1 cut(s)	396
EcoICRI	GAGCTC	2 cut(s)	336, 422
EcoO109I	RGGNCCY	1 cut(s)	640
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	478
EcoT38I	GRGCYC	2 cut(s)	338, 424
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	2 cut(s)	123, 354
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	2 cut(s)	119, 350
FbaI	TGATCA	2 cut(s)	655, 765
Fnu4HI	GCNGC	2 cut(s)	189, 393
FriOI	GRGCYC	2 cut(s)	338, 424
Fsp4HI	GCNGC	2 cut(s)	189, 393
FspBI	CTAG	2 cut(s)	591, 672
GluI	GCNGC	2 cut(s)	189, 393
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	1 cut(s)	642
HapII	CCGG	3 cut(s)	145, 633, 795
HgaI	GACGC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	123, 354
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	401, 509
HpaII	CCGG	3 cut(s)	145, 633, 795
HphI	GGTGA	3 cut(s)	281, 622, 784
Hpy166II	GTNNAC	2 cut(s)	229, 788
Hpy188I	TCNGA	6 cut(s)	159, 175, 288, 585, 621, 655
Hpy188III	TCNNGA	6 cut(s)	145, 331, 494, 578, 591, 840
Hpy8I	GTNNAC	2 cut(s)	229, 788
Hpy99I	CGWCG	3 cut(s)	39, 247, 560
HpyAV	CCTTC	1 cut(s)	653
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	2 cut(s)	291, 503
HpyCH4V	TGCA	5 cut(s)	68, 326, 350, 449, 825
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 752
HpyF3I	CTNAG	2 cut(s)	412, 647
HpySE526I	ACGT	2 cut(s)	291, 503
Hsp92II	CATG	2 cut(s)	123, 354
Kpn2I	TCCGGA	1 cut(s)	144
Ksp22I	TGATCA	2 cut(s)	655, 765
Kzo9I	GATC	5 cut(s)	57, 526, 580, 655, 765
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	2 cut(s)	175, 379
LweI	GCATC	2 cut(s)	229, 313
MaeI	CTAG	2 cut(s)	591, 672
MaeII	ACGT	2 cut(s)	291, 503
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	5 cut(s)	59, 528, 582, 657, 767
MboI	GATC	5 cut(s)	57, 526, 580, 655, 765
MboII	GAAGA	2 cut(s)	23, 122
MfeI	CAATTG	2 cut(s)	92, 429
MhlI	GDGCHC	2 cut(s)	338, 424
MluCI	AATT	8 cut(s)	92, 295, 429, 666, 676, 727, 757, 835
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	2 cut(s)	145, 299
MroI	TCCGGA	1 cut(s)	144
MseI	TTAA	2 cut(s)	665, 834
MspI	CCGG	3 cut(s)	145, 633, 795
MspR9I	CCNGG	2 cut(s)	743, 796
MunI	CAATTG	2 cut(s)	92, 429
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	743
MwoI	GCNNNNNNNGC	2 cut(s)	446, 752
NciI	CCSGG	1 cut(s)	796
NdeII	GATC	5 cut(s)	57, 526, 580, 655, 765
NlaIII	CATG	2 cut(s)	123, 354
NmuCI	GTSAC	1 cut(s)	547
NspI	RCATGY	2 cut(s)	123, 354
PciI	ACATGT	1 cut(s)	119
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	401, 509
PkrI	GCNGC	2 cut(s)	190, 394
PscI	ACATGT	1 cut(s)	119
Psp124BI	GAGCTC	2 cut(s)	338, 424
Psp6I	CCWGG	1 cut(s)	741
PspGI	CCWGG	1 cut(s)	741
PspPI	GGNCC	3 cut(s)	491, 640, 709
PstI	CTGCAG	1 cut(s)	827
RsaI	GTAC	2 cut(s)	100, 697
RsaNI	GTAC	2 cut(s)	99, 696
SacI	GAGCTC	2 cut(s)	338, 424
SaqAI	TTAA	2 cut(s)	665, 834
SatI	GCNGC	2 cut(s)	189, 393
Sau3AI	GATC	5 cut(s)	57, 526, 580, 655, 765
Sau96I	GGNCC	3 cut(s)	491, 640, 709
ScrFI	CCNGG	2 cut(s)	743, 796
SduI	GDGCHC	2 cut(s)	338, 424
SfaNI	GCATC	2 cut(s)	229, 313
SfcI	CTRYAG	3 cut(s)	530, 718, 823
SinI	GGWCC	2 cut(s)	491, 709
Sse9I	AATT	8 cut(s)	92, 295, 429, 666, 676, 727, 757, 835
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	2 cut(s)	591, 672
SstI	GAGCTC	2 cut(s)	338, 424
StyD4I	CCNGG	2 cut(s)	741, 794
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	2 cut(s)	294, 506
TaqI	TCGA	4 cut(s)	245, 255, 321, 603
TasI	AATT	8 cut(s)	92, 295, 429, 666, 676, 727, 757, 835
TfiI	GAWTC	2 cut(s)	401, 509
Tru1I	TTAA	2 cut(s)	665, 834
Tru9I	TTAA	2 cut(s)	665, 834
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	2 cut(s)	188, 392
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	3 cut(s)	13, 17, 17
TspGWI	ACGGA	3 cut(s)	116, 328, 573
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	2 cut(s)	491, 709
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	590
XceI	RCATGY	2 cut(s)	123, 354
XcmI	CCANNNNNNNNNTGG	2 cut(s)	485, 739
XspI	CTAG	2 cut(s)	591, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.