Rh5AG525300

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009944
Physical Location & Seq
Forward (+)
90027470 .. 90029344
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG525300.1

Sequence Viewer

Length: 1005 bp
ATGAAAAGGTCATTCAGCAGTTTCATTCATCTTCGTCGTTGTTTTTTGGTAGTTATGATCTTATTTGCATTGAGTTCGGTTGTGAAAGCCCAATTGAGTACGGATTTCTACCAGCAAACATGTCCAAATCTTCTCAAAATCGTCCGGACAGAGGTTCAGAATGCTATCAAATCCGAAATGCGAATGGCTGCTTCGTTGCTTCGGCTTCACTTCCACGACTGCTTTGTCAACGGTTGTGATGCGTCGATACTACTCGATTTACCTGATGGTGAGAAGTCTGCCTTTCCGAACGTGAATTCAGCGAGAGGATTTGAAGTTATCGATGCAATCAAGAGCTCCGTGGAGAGTGCATGTAGTGGAGTTGTTTCTTGTACTGATATACTAACCATAGCTGCCCGAGATTCTGTGGTCTTAAGTGGAGGAAATTCATGGAAAGTTTTGCTGGGAAGAAGAGATGGGTTTGTGGCAAACCAGACAGGAGCAAACGTTGGGCTTCCTTCTCCATTTGACACGCTTGATGTCATCATTTCCAAGTTCGCCAATGTAGGCCTAAATGTCACAGACGTGGTAGCCTTATCAGGAGCTCATACAATTGGGTTAGCAAGGTGTGCAACTTTCAGCAACAGATTGTTCAACTTCCAAGGAACAGGTGGTCCAGACAGCACGTTAGATTCAAGTATGGCAACTGATCTACAGAACCTATGCCCTGTGACCAGCGACGGAAACAACACTGCGGTTCTTGATCGGAACTCTAGAGATTTATTCGACAACCATTACTTTCAGAACTTGCTCACCGGAAAGGGCCTTCTCAGTTCTGATCAGCTTTTAATTTCTAGTGATTTAGCCGATACAACAAGTACCAAGAGCTTGGTCCAAAGCTATAGCTCTAATTCCAACCTTTTCCTGGCAGATTTTGCTAATTCTATGATCAAAATGGGAAGTATAAGTCCACTCACCGGGTCTGCTGGAGAGATAAGAAAGAACTGCAGGGTTGTTAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

334

Amino Acids

35.86

Weight (kDa)

6.51

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 297 2.3e-82 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccIII TCCGGA 1 cut(s) 144
AciI CCGC 1 cut(s) 734
AclI AACGTT 1 cut(s) 486
AcsI RAATTY 2 cut(s) 295, 424
AfaI GTAC 3 cut(s) 100, 373, 859
AfiI CCNNNNNNNGG 3 cut(s) 151, 904, 956
AflII CTTAAG 1 cut(s) 412
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 3 cut(s) 314, 634, 675
AjiI CACGTC 1 cut(s) 565
AjnI CCWGG 1 cut(s) 903
AleI CACNNNNGTG 1 cut(s) 563
AloI GAACNNNNNNTCC 2 cut(s) 637, 669
AluBI AGCT 7 cut(s) 336, 392, 584, 823, 867, 879, 885
AluI AGCT 7 cut(s) 336, 392, 584, 823, 867, 879, 885
Alw21I GWGCWC 2 cut(s) 338, 586
Ama87I CYCGRG 1 cut(s) 396
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 2 cut(s) 547, 802
ApeKI GCWGC 2 cut(s) 188, 392
ApoI RAATTY 2 cut(s) 295, 424
AspS9I GGNCC 3 cut(s) 653, 802, 871
AsuC2I CCSGG 1 cut(s) 958
AsuHPI GGTGA 3 cut(s) 281, 784, 946
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 2 cut(s) 653, 871
BanII GRGCYC 2 cut(s) 338, 586
Bbv12I GWGCWC 2 cut(s) 338, 586
BbvI GCAGC 2 cut(s) 175, 379
BccI CCATC 2 cut(s) 260, 449
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 1 cut(s) 905
BclI TGATCA 2 cut(s) 817, 927
BcnI CCSGG 1 cut(s) 958
BfaI CTAG 2 cut(s) 753, 834
BfmI CTRYAG 3 cut(s) 692, 880, 985
BfrI CTTAAG 1 cut(s) 412
BisI GCNGC 2 cut(s) 189, 393
BlsI GCNGC 2 cut(s) 190, 394
Bme1390I CCNGG 2 cut(s) 905, 958
Bme18I GGWCC 2 cut(s) 653, 871
BmeT110I CYCGRG 1 cut(s) 396
BmgBI CACGTC 1 cut(s) 565
BmgT120I GGNCC 3 cut(s) 653, 802, 871
BmrFI CCNGG 2 cut(s) 905, 958
BmsI GCATC 2 cut(s) 229, 313
BpmI CTGGAG 1 cut(s) 987
BpuMI CCSGG 1 cut(s) 958
Bsa29I ATCGAT 1 cut(s) 321
BsaJI CCNNGG 2 cut(s) 339, 640
BsaWI WCCGGW 2 cut(s) 144, 794
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 904, 956
BseAI TCCGGA 1 cut(s) 144
BseBI CCWGG 1 cut(s) 905
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 339, 640
BseLI CCNNNNNNNGG 3 cut(s) 151, 904, 956
BseMII CTCAG 1 cut(s) 823
BseXI GCAGC 2 cut(s) 175, 379
BseYI CCCAGC 1 cut(s) 442
BshFI GGCC 2 cut(s) 549, 804
BshVI ATCGAT 1 cut(s) 321
BsiHKAI GWGCWC 2 cut(s) 338, 586
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 3 cut(s) 145, 795, 957
BslI CCNNNNNNNGG 3 cut(s) 151, 904, 956
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 2 cut(s) 549, 804
BsoBI CYCGRG 1 cut(s) 396
Bsp1286I GDGCHC 2 cut(s) 338, 586
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 5 cut(s) 57, 688, 742, 817, 927
BspACI CCGC 1 cut(s) 734
BspANI GGCC 2 cut(s) 549, 804
BspCNI CTCAG 1 cut(s) 822
BspDI ATCGAT 1 cut(s) 321
BspEI TCCGGA 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 989
BspTI CTTAAG 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 339, 640
BssMI GATC 5 cut(s) 57, 688, 742, 817, 927
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 1 cut(s) 905
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 445
BstAFI CTTAAG 1 cut(s) 412
BstAPI GCANNNNNTGC 2 cut(s) 608, 914
BstDEI CTNAG 1 cut(s) 809
BstDSI CCRYGG 1 cut(s) 339
BstKTI GATC 5 cut(s) 60, 691, 745, 820, 930
BstMBI GATC 5 cut(s) 57, 688, 742, 817, 927
BstMWI GCNNNNNNNGC 2 cut(s) 608, 914
BstNI CCWGG 1 cut(s) 905
BstNSI RCATGY 2 cut(s) 123, 354
BstSCI CCNGG 2 cut(s) 903, 956
BstSFI CTRYAG 3 cut(s) 692, 880, 985
BstV1I GCAGC 2 cut(s) 175, 379
BstXI CCANNNNNNTGG 1 cut(s) 868
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 2 cut(s) 549, 804
BsuTUI ATCGAT 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 339
BtrI CACGTC 1 cut(s) 565
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 1 cut(s) 729
Cfr13I GGNCC 3 cut(s) 653, 802, 871
ClaI ATCGAT 1 cut(s) 321
CseI GACGC 1 cut(s) 231
Csp6I GTAC 3 cut(s) 99, 372, 858
CviAII CATG 3 cut(s) 120, 351, 429
CviQI GTAC 3 cut(s) 99, 372, 858
DdeI CTNAG 1 cut(s) 809
DpnI GATC 5 cut(s) 59, 690, 744, 819, 929
DpnII GATC 5 cut(s) 57, 688, 742, 817, 927
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
Ecl136II GAGCTC 2 cut(s) 336, 584
Eco130I CCWWGG 1 cut(s) 640
Eco147I AGGCCT 1 cut(s) 549
Eco24I GRGCYC 2 cut(s) 338, 586
Eco47I GGWCC 2 cut(s) 653, 871
Eco53kI GAGCTC 2 cut(s) 336, 584
Eco88I CYCGRG 1 cut(s) 396
EcoICRI GAGCTC 2 cut(s) 336, 584
EcoO109I RGGNCCY 1 cut(s) 802
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 903
EcoT14I CCWWGG 1 cut(s) 640
EcoT38I GRGCYC 2 cut(s) 338, 586
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 3 cut(s) 123, 354, 432
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 3 cut(s) 119, 350, 428
FbaI TGATCA 2 cut(s) 817, 927
Fnu4HI GCNGC 2 cut(s) 189, 393
FriOI GRGCYC 2 cut(s) 338, 586
Fsp4HI GCNGC 2 cut(s) 189, 393
FspBI CTAG 2 cut(s) 753, 834
GluI GCNGC 2 cut(s) 189, 393
GsaI CCCAGC 1 cut(s) 446
GsuI CTGGAG 1 cut(s) 987
HaeIII GGCC 2 cut(s) 549, 804
HapII CCGG 3 cut(s) 145, 795, 957
HgaI GACGC 1 cut(s) 231
Hin1II CATG 3 cut(s) 123, 354, 432
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 2 cut(s) 401, 671
HpaII CCGG 3 cut(s) 145, 795, 957
HphI GGTGA 3 cut(s) 281, 784, 946
Hpy166II GTNNAC 2 cut(s) 229, 950
Hpy188I TCNGA 6 cut(s) 159, 175, 288, 747, 783, 817
Hpy188III TCNNGA 7 cut(s) 145, 331, 579, 656, 740, 753, 1002
Hpy8I GTNNAC 2 cut(s) 229, 950
Hpy99I CGWCG 3 cut(s) 39, 247, 722
HpyAV CCTTC 2 cut(s) 507, 815
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 4 cut(s) 291, 486, 564, 665
HpyCH4V TGCA 5 cut(s) 68, 326, 350, 611, 987
HpyF10VI GCNNNNNNNGC 2 cut(s) 608, 914
HpyF3I CTNAG 1 cut(s) 809
HpySE526I ACGT 4 cut(s) 291, 486, 564, 665
Hsp92II CATG 3 cut(s) 123, 354, 432
Kpn2I TCCGGA 1 cut(s) 144
Ksp22I TGATCA 2 cut(s) 817, 927
Kzo9I GATC 5 cut(s) 57, 688, 742, 817, 927
LmnI GCTCC 3 cut(s) 341, 479, 581
Lsp1109I GCAGC 2 cut(s) 175, 379
LweI GCATC 2 cut(s) 229, 313
MaeI CTAG 2 cut(s) 753, 834
MaeII ACGT 4 cut(s) 291, 486, 564, 665
MaeIII GTNAC 2 cut(s) 556, 709
MalI GATC 5 cut(s) 59, 690, 744, 819, 929
MboI GATC 5 cut(s) 57, 688, 742, 817, 927
MboII GAAGA 4 cut(s) 23, 122, 459, 462
MfeI CAATTG 2 cut(s) 92, 591
MhlI GDGCHC 2 cut(s) 338, 586
MluCI AATT 8 cut(s) 92, 295, 424, 591, 828, 889, 919, 997
MmeI TCCRAC 1 cut(s) 918
MnlI CCTC 3 cut(s) 145, 299, 413
MroI TCCGGA 1 cut(s) 144
MseI TTAA 3 cut(s) 413, 827, 996
MslI CAYNNNNRTG 1 cut(s) 563
MspCI CTTAAG 1 cut(s) 412
MspI CCGG 3 cut(s) 145, 795, 957
MspR9I CCNGG 2 cut(s) 905, 958
MunI CAATTG 2 cut(s) 92, 591
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 1 cut(s) 905
MwoI GCNNNNNNNGC 2 cut(s) 608, 914
NciI CCSGG 1 cut(s) 958
NdeII GATC 5 cut(s) 57, 688, 742, 817, 927
NlaIII CATG 3 cut(s) 123, 354, 432
NmuCI GTSAC 2 cut(s) 556, 709
NspI RCATGY 2 cut(s) 123, 354
OliI CACNNNNGTG 1 cut(s) 563
PceI AGGCCT 1 cut(s) 549
PciI ACATGT 1 cut(s) 119
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 2 cut(s) 401, 671
PkrI GCNGC 2 cut(s) 190, 394
PscI ACATGT 1 cut(s) 119
Psp124BI GAGCTC 2 cut(s) 338, 586
Psp1406I AACGTT 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 903
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 1 cut(s) 903
PspPI GGNCC 3 cut(s) 653, 802, 871
PstI CTGCAG 1 cut(s) 989
RsaI GTAC 3 cut(s) 100, 373, 859
RsaNI GTAC 3 cut(s) 99, 372, 858
RseI CAYNNNNRTG 1 cut(s) 563
SacI GAGCTC 2 cut(s) 338, 586
SaqAI TTAA 3 cut(s) 413, 827, 996
SatI GCNGC 2 cut(s) 189, 393
Sau3AI GATC 5 cut(s) 57, 688, 742, 817, 927
Sau96I GGNCC 3 cut(s) 653, 802, 871
ScrFI CCNGG 2 cut(s) 905, 958
SduI GDGCHC 2 cut(s) 338, 586
SfaNI GCATC 2 cut(s) 229, 313
SfcI CTRYAG 3 cut(s) 692, 880, 985
SinI GGWCC 2 cut(s) 653, 871
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 8 cut(s) 92, 295, 424, 591, 828, 889, 919, 997
SseBI AGGCCT 1 cut(s) 549
SsiI CCGC 1 cut(s) 734
SspMI CTAG 2 cut(s) 753, 834
SstI GAGCTC 2 cut(s) 338, 586
StuI AGGCCT 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 903, 956
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 4 cut(s) 294, 489, 567, 668
TaqI TCGA 4 cut(s) 245, 255, 321, 765
TasI AATT 8 cut(s) 92, 295, 424, 591, 828, 889, 919, 997
TatI WGTACW 1 cut(s) 371
TfiI GAWTC 2 cut(s) 401, 671
Tru1I TTAA 3 cut(s) 413, 827, 996
Tru9I TTAA 3 cut(s) 413, 827, 996
TscAI CASTG 1 cut(s) 736
TseFI GTSAC 2 cut(s) 556, 709
TseI GCWGC 2 cut(s) 188, 392
Tsp45I GTSAC 2 cut(s) 556, 709
TspDTI ATGAA 4 cut(s) 13, 17, 17, 417
TspGWI ACGGA 3 cut(s) 116, 328, 735
TspRI CASTG 1 cut(s) 736
Vha464I CTTAAG 1 cut(s) 412
VpaK11BI GGWCC 2 cut(s) 653, 871
XapI RAATTY 2 cut(s) 295, 424
XbaI TCTAGA 1 cut(s) 752
XceI RCATGY 2 cut(s) 123, 354
XcmI CCANNNNNNNNNTGG 2 cut(s) 647, 901
XspI CTAG 2 cut(s) 753, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.