Rh5BG547700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0009944
Physical Location & Seq
Forward (+)
86988045 .. 86988543
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG547700.1

Sequence Viewer

Length: 423 bp
ATGAAAAGGTCATTCAGCAGTTTCATTCATCTTCGTCGTTGTTTTTTGGTAGTTATGATCTTATTTGCATTGAGTTCGGTTGTGAAAGCCCAATTGAGTACGGATTTCTACCAGCAAACATGTCCAAATCTTCTCAAAATCGTCCGGACAGAGGTTCAGAATGCTATCAAATCCGAAATGCGAATGGCTGCTTCTTTGCTTCGGCTTCACTTCCACGACTGCTTTGTCAACGGTTGTGATGCGTCGATACTACTCGATTTACCTGATGGTGAGAAGTCTGCCTTTCCGAACGTGAATTCAGCGAGAGGGTTTGAAGTTATCGATGCAATCAAAAGCTCCGTGGAGAGCGCATGTAGTGGAGTTGTTTCTTGTGCTGATATACTAACCATAGCTGCCCGAGATTCTGTGGTCTTAGTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

140

Amino Acids

15.35

Weight (kDa)

7.62

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 138 6.5e-35 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccIII TCCGGA 1 cut(s) 144
AcsI RAATTY 1 cut(s) 295
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 1 cut(s) 314
AluBI AGCT 2 cut(s) 336, 392
AluI AGCT 2 cut(s) 336, 392
Ama87I CYCGRG 1 cut(s) 396
Aor13HI TCCGGA 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 188, 392
ApoI RAATTY 1 cut(s) 295
AspLEI GCGC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 396
BbvI GCAGC 2 cut(s) 175, 379
BccI CCATC 1 cut(s) 260
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BisI GCNGC 2 cut(s) 189, 393
BlsI GCNGC 2 cut(s) 190, 394
BmeT110I CYCGRG 1 cut(s) 396
BmsI GCATC 2 cut(s) 229, 313
Bsa29I ATCGAT 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 151
BseAI TCCGGA 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 175, 379
BshVI ATCGAT 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 151
BsmI GAATGC 1 cut(s) 166
BsoBI CYCGRG 1 cut(s) 396
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 321
BspEI TCCGGA 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 412
BstDSI CCRYGG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstNSI RCATGY 2 cut(s) 123, 354
BstV1I GCAGC 2 cut(s) 175, 379
Bsu15I ATCGAT 1 cut(s) 321
BsuTUI ATCGAT 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 339
CfoI GCGC 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 321
CseI GACGC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 99
CviAII CATG 2 cut(s) 120, 351
CviJI RGCY 5 cut(s) 89, 188, 205, 336, 392
CviKI_1 RGCY 5 cut(s) 89, 188, 205, 336, 392
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 1 cut(s) 412
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 396
EcoRI GAATTC 1 cut(s) 295
FaeI CATG 2 cut(s) 123, 354
FaiI YATR 5 cut(s) 56, 121, 352, 380, 389
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 2 cut(s) 119, 350
Fnu4HI GCNGC 2 cut(s) 189, 393
Fsp4HI GCNGC 2 cut(s) 189, 393
GlaI GCGC 1 cut(s) 349
GluI GCNGC 2 cut(s) 189, 393
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 231
HhaI GCGC 1 cut(s) 350
Hin1II CATG 2 cut(s) 123, 354
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 1 cut(s) 401
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 3 cut(s) 159, 175, 288
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 2 cut(s) 39, 247
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 68, 326
HpyF3I CTNAG 1 cut(s) 412
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 2 cut(s) 123, 354
HspAI GCGC 1 cut(s) 348
Kpn2I TCCGGA 1 cut(s) 144
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 3 cut(s) 125, 158, 276
Lsp1109I GCAGC 2 cut(s) 175, 379
LweI GCATC 2 cut(s) 229, 313
MaeII ACGT 1 cut(s) 291
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 2 cut(s) 23, 122
MfeI CAATTG 1 cut(s) 92
MluCI AATT 2 cut(s) 92, 295
MnlI CCTC 2 cut(s) 145, 299
MroI TCCGGA 1 cut(s) 144
MseI TTAA 1 cut(s) 421
MspI CCGG 1 cut(s) 145
MunI CAATTG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 166
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 123, 354
NspI RCATGY 2 cut(s) 123, 354
PciI ACATGT 1 cut(s) 119
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 2 cut(s) 190, 394
PscI ACATGT 1 cut(s) 119
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 421
SatI GCNGC 2 cut(s) 189, 393
Sau3AI GATC 1 cut(s) 57
SetI ASST 6 cut(s) 11, 156, 265, 294, 338, 394
SfaNI GCATC 2 cut(s) 229, 313
Sse9I AATT 2 cut(s) 92, 295
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 1 cut(s) 294
TaqI TCGA 3 cut(s) 245, 255, 321
TasI AATT 2 cut(s) 92, 295
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 1 cut(s) 421
Tru9I TTAA 1 cut(s) 421
TseI GCWGC 2 cut(s) 188, 392
TspDTI ATGAA 3 cut(s) 13, 17, 17
TspGWI ACGGA 2 cut(s) 116, 328
XapI RAATTY 1 cut(s) 295
XceI RCATGY 2 cut(s) 123, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.