RLG00000036890

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009944
Physical Location & Seq
Forward (+)
86169639 .. 86172707
3069 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036890

Sequence Viewer

Length: 1227 bp
ATGGTTGTTAGTACATCACAAATTGTAACTAATCTAGTTGACAACAACCTGTATGCTGCTTTGATTAATGAAGCTTTTGAAAGGGTTGCTATTGAGCATATTAAATGCTTAGTTAACATTGTAACGAATGGGTCTAGTGTTCCTAAAGACTTAGAGCCCAGCATGAAGCATGCTACTCTAGGAAATTCACAAAGTTCTTCCCTACAGCTAGAGGATCAAAGTGCTAGCCATCTTGGCAAGGGAATTATTAATCAGCTTGATTATGGCGATGATGTTATGATCTTATTTGCATTGAGTTTGGTTGTGAAAGCCCAATTGAGTACGGATTTCTACCAGCAAACATGTCCAAATCTTCTCAAAATCGTCCGGACAGAGGTTCAGAATGCTATCAAATCCGAAATGCGAATGGCTGCTTCTTTGCTTCGGCTTCACTTCCACGACTGCTTTGTCAACGGTTGTGATGCGTCGATACTACTCGATTTACCTGATGGTGAGAAGTCTGCCTTTCCGAACGTGAATTCAGCGAGAGGGTTTGAAGTTATCGATGCAATCAAGAGCTCCGTGGAGAGTGCATGTAGTGGAGTCGTTTCTTGTGCTGATATACTCACCATAGCTGCCCGAGATTCTGTGGTCTTAAGTGGAGGAAATTCATGGAAAGTTTTGCTGGGAAGAAGAGACGGGTTTGTGGCAAACCAGGCAGGAGCAAACGTTGGGCTTCCTTCTCCATTTGACACGCTTGATGCCATCATTTCCAAGTTCGCCAATGTAGGCCTAAATGTCACAGACGTGGTAGCCTTATCAGGAGCTCATACAATTGGGTTAGCAAGGTGTGCAACTTTCAGCAACAGACTGTTCAACTTCCAAGGAACAGGTGGTCCAGACAGCACGTTAGATTCAAGTATGGCAACTGATCTACAGAACCTATGCCCTGTGACCAGCGACGGAAACAACACTGCGGTTCTTGATCGGAACTCTAGAGATTTATTCGACAACCATTACTTTCAGAATTTGCTCACCGGAAAGGGCCTTCTCAGTTCTGATCAGCTTTTAATTTCTAGTGATTTAGCCGATACAACAAGTACTAAGAGCTTGGTCCAAAGCTATAGCTCTAATTCCAACCTTTTCCTGGCAGATTTTGCTAATTCTATGATCAAAATGGGAAGTATAAGTCCACTGACCGGGTCTGCTGGAGAGATAAGAAAGAACTGCAGGGTTGTTAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

409

Amino Acids

43.48

Weight (kDa)

5.06

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 122 - 371 3.3e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
AccIII TCCGGA 1 cut(s) 366
AciI CCGC 1 cut(s) 956
AclI AACGTT 1 cut(s) 708
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 4 cut(s) 184, 517, 646, 1006
AfaI GTAC 3 cut(s) 13, 322, 1081
AfiI CCNNNNNNNGG 3 cut(s) 373, 1126, 1178
AflII CTTAAG 1 cut(s) 634
AflIII ACRYGT 1 cut(s) 341
AgsI TTSAA 4 cut(s) 80, 536, 856, 897
AjiI CACGTC 1 cut(s) 787
AjnI CCWGG 2 cut(s) 693, 1125
AleI CACNNNNGTG 1 cut(s) 785
AloI GAACNNNNNNTCC 2 cut(s) 859, 891
Alw21I GWGCWC 2 cut(s) 560, 808
Alw26I GTCTC 1 cut(s) 669
AlwI GGATC 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 618
Aor13HI TCCGGA 1 cut(s) 366
AoxI GGCC 2 cut(s) 769, 1024
ApeKI GCWGC 3 cut(s) 56, 410, 614
ApoI RAATTY 4 cut(s) 184, 517, 646, 1006
AseI ATTAAT 2 cut(s) 66, 249
AspS9I GGNCC 3 cut(s) 875, 1024, 1093
AsuC2I CCSGG 1 cut(s) 1180
AsuHPI GGTGA 3 cut(s) 503, 598, 1006
AsuNHI GCTAGC 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 618
AvaII GGWCC 2 cut(s) 875, 1093
BanII GRGCYC 3 cut(s) 159, 560, 808
Bbv12I GWGCWC 2 cut(s) 560, 808
BbvI GCAGC 3 cut(s) 43, 397, 601
BccI CCATC 3 cut(s) 237, 482, 752
BciT130I CCWGG 2 cut(s) 695, 1127
BclI TGATCA 2 cut(s) 1039, 1149
BcnI CCSGG 1 cut(s) 1180
BcoDI GTCTC 1 cut(s) 669
BfaI CTAG 7 cut(s) 35, 135, 179, 209, 225, 975, 1056
BfmI CTRYAG 4 cut(s) 203, 914, 1102, 1207
BfrI CTTAAG 1 cut(s) 634
BglI GCCNNNNNGGC 1 cut(s) 234
BisI GCNGC 3 cut(s) 57, 411, 615
BlsI GCNGC 3 cut(s) 58, 412, 616
BmcAI AGTACT 1 cut(s) 1081
Bme1390I CCNGG 3 cut(s) 695, 1127, 1180
Bme18I GGWCC 2 cut(s) 875, 1093
BmeT110I CYCGRG 1 cut(s) 618
BmgBI CACGTC 1 cut(s) 787
BmgT120I GGNCC 3 cut(s) 875, 1024, 1093
BmrFI CCNGG 3 cut(s) 695, 1127, 1180
BmsI GCATC 3 cut(s) 451, 535, 730
BmtI GCTAGC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 1209
BpuMI CCSGG 1 cut(s) 1180
Bsa29I ATCGAT 1 cut(s) 543
BsaJI CCNNGG 2 cut(s) 561, 862
BsaWI WCCGGW 2 cut(s) 366, 1016
BsaXI ACNNNNNCTCC 2 cut(s) 693, 723
Bsc4I CCNNNNNNNGG 3 cut(s) 373, 1126, 1178
BseAI TCCGGA 1 cut(s) 366
BseBI CCWGG 2 cut(s) 695, 1127
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 561, 862
BseLI CCNNNNNNNGG 3 cut(s) 373, 1126, 1178
BseMII CTCAG 1 cut(s) 1045
BseXI GCAGC 3 cut(s) 43, 397, 601
BseYI CCCAGC 2 cut(s) 158, 664
BshFI GGCC 2 cut(s) 771, 1026
BshVI ATCGAT 1 cut(s) 543
BsiHKAI GWGCWC 2 cut(s) 560, 808
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 3 cut(s) 367, 1017, 1179
BslI CCNNNNNNNGG 3 cut(s) 373, 1126, 1178
BsmAI GTCTC 1 cut(s) 669
BsmBI CGTCTC 1 cut(s) 669
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 2 cut(s) 771, 1026
BsoBI CYCGRG 1 cut(s) 618
Bsp1286I GDGCHC 3 cut(s) 159, 560, 808
Bsp13I TCCGGA 1 cut(s) 366
Bsp143I GATC 6 cut(s) 214, 279, 910, 964, 1039, 1149
BspACI CCGC 1 cut(s) 956
BspANI GGCC 2 cut(s) 771, 1026
BspCNI CTCAG 1 cut(s) 1044
BspDI ATCGAT 1 cut(s) 543
BspEI TCCGGA 1 cut(s) 366
BspMAI CTGCAG 1 cut(s) 1211
BspOI GCTAGC 1 cut(s) 228
BspPI GGATC 1 cut(s) 222
BspTI CTTAAG 1 cut(s) 634
BssECI CCNNGG 2 cut(s) 561, 862
BssMI GATC 6 cut(s) 214, 279, 910, 964, 1039, 1149
BssT1I CCWWGG 1 cut(s) 862
Bst2UI CCWGG 2 cut(s) 695, 1127
Bst4CI ACNGT 2 cut(s) 455, 852
Bst6I CTCTTC 1 cut(s) 667
BstAFI CTTAAG 1 cut(s) 634
BstAPI GCANNNNNTGC 2 cut(s) 830, 1136
BstC8I GCNNGC 2 cut(s) 171, 226
BstDEI CTNAG 4 cut(s) 109, 151, 1031, 1083
BstDSI CCRYGG 1 cut(s) 561
BstKTI GATC 6 cut(s) 217, 282, 913, 967, 1042, 1152
BstMAI GTCTC 1 cut(s) 669
BstMBI GATC 6 cut(s) 214, 279, 910, 964, 1039, 1149
BstMWI GCNNNNNNNGC 4 cut(s) 234, 695, 830, 1136
BstNI CCWGG 2 cut(s) 695, 1127
BstNSI RCATGY 3 cut(s) 173, 345, 576
BstSCI CCNGG 3 cut(s) 693, 1125, 1178
BstSFI CTRYAG 4 cut(s) 203, 914, 1102, 1207
BstV1I GCAGC 3 cut(s) 43, 397, 601
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 2 cut(s) 771, 1026
BsuTUI ATCGAT 1 cut(s) 543
BtgI CCRYGG 1 cut(s) 561
BtgZI GCGATG 1 cut(s) 282
BtrI CACGTC 1 cut(s) 787
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 2 cut(s) 951, 1172
Cac8I GCNNGC 2 cut(s) 171, 226
Cfr13I GGNCC 3 cut(s) 875, 1024, 1093
ClaI ATCGAT 1 cut(s) 543
CseI GACGC 1 cut(s) 453
Csp6I GTAC 3 cut(s) 12, 321, 1080
CviAII CATG 5 cut(s) 163, 170, 342, 573, 651
CviQI GTAC 3 cut(s) 12, 321, 1080
DdeI CTNAG 4 cut(s) 109, 151, 1031, 1083
DpnI GATC 6 cut(s) 216, 281, 912, 966, 1041, 1151
DpnII GATC 6 cut(s) 214, 279, 910, 964, 1039, 1149
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
Eam1104I CTCTTC 1 cut(s) 667
EarI CTCTTC 1 cut(s) 667
Ecl136II GAGCTC 2 cut(s) 558, 806
Eco130I CCWWGG 1 cut(s) 862
Eco147I AGGCCT 1 cut(s) 771
Eco24I GRGCYC 3 cut(s) 159, 560, 808
Eco47I GGWCC 2 cut(s) 875, 1093
Eco53kI GAGCTC 2 cut(s) 558, 806
Eco88I CYCGRG 1 cut(s) 618
EcoICRI GAGCTC 2 cut(s) 558, 806
EcoO109I RGGNCCY 1 cut(s) 1024
EcoRI GAATTC 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 693, 1125
EcoT14I CCWWGG 1 cut(s) 862
EcoT38I GRGCYC 3 cut(s) 159, 560, 808
ErhI CCWWGG 1 cut(s) 862
Esp3I CGTCTC 1 cut(s) 669
FaeI CATG 5 cut(s) 166, 173, 345, 576, 654
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FatI CATG 5 cut(s) 162, 169, 341, 572, 650
FbaI TGATCA 2 cut(s) 1039, 1149
Fnu4HI GCNGC 3 cut(s) 57, 411, 615
FriOI GRGCYC 3 cut(s) 159, 560, 808
Fsp4HI GCNGC 3 cut(s) 57, 411, 615
FspBI CTAG 7 cut(s) 35, 135, 179, 209, 225, 975, 1056
GluI GCNGC 3 cut(s) 57, 411, 615
GsaI CCCAGC 2 cut(s) 162, 668
GsuI CTGGAG 1 cut(s) 1209
HaeIII GGCC 2 cut(s) 771, 1026
HapII CCGG 3 cut(s) 367, 1017, 1179
HgaI GACGC 1 cut(s) 453
Hin1II CATG 5 cut(s) 166, 173, 345, 576, 654
HincII GTYRAC 3 cut(s) 40, 115, 451
HindII GTYRAC 3 cut(s) 40, 115, 451
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 3 cut(s) 582, 623, 893
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 3 cut(s) 367, 1017, 1179
HphI GGTGA 3 cut(s) 503, 598, 1006
Hpy166II GTNNAC 4 cut(s) 40, 115, 451, 1172
Hpy188I TCNGA 6 cut(s) 381, 397, 510, 969, 1005, 1039
Hpy188III TCNNGA 7 cut(s) 367, 553, 801, 878, 962, 975, 1224
Hpy8I GTNNAC 4 cut(s) 40, 115, 451, 1172
Hpy99I CGWCG 2 cut(s) 469, 944
HpyAV CCTTC 2 cut(s) 729, 1037
HpyCH4III ACNGT 2 cut(s) 455, 852
HpyCH4IV ACGT 4 cut(s) 513, 708, 786, 887
HpyCH4V TGCA 5 cut(s) 290, 548, 572, 833, 1209
HpyF10VI GCNNNNNNNGC 4 cut(s) 234, 695, 830, 1136
HpyF3I CTNAG 4 cut(s) 109, 151, 1031, 1083
HpySE526I ACGT 4 cut(s) 513, 708, 786, 887
Hsp92II CATG 5 cut(s) 166, 173, 345, 576, 654
Kpn2I TCCGGA 1 cut(s) 366
Ksp22I TGATCA 2 cut(s) 1039, 1149
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 6 cut(s) 214, 279, 910, 964, 1039, 1149
LmnI GCTCC 3 cut(s) 563, 701, 803
Lsp1109I GCAGC 3 cut(s) 43, 397, 601
LweI GCATC 3 cut(s) 451, 535, 730
MaeI CTAG 7 cut(s) 35, 135, 179, 209, 225, 975, 1056
MaeII ACGT 4 cut(s) 513, 708, 786, 887
MaeIII GTNAC 4 cut(s) 25, 121, 778, 931
MalI GATC 6 cut(s) 216, 281, 912, 966, 1041, 1151
MboI GATC 6 cut(s) 214, 279, 910, 964, 1039, 1149
MboII GAAGA 4 cut(s) 189, 344, 681, 684
MfeI CAATTG 2 cut(s) 314, 813
MhlI GDGCHC 3 cut(s) 159, 560, 808
MlyI GAGTC 1 cut(s) 591
MmeI TCCRAC 1 cut(s) 1140
MnlI CCTC 4 cut(s) 205, 367, 521, 635
MroI TCCGGA 1 cut(s) 366
MseI TTAA 7 cut(s) 66, 102, 114, 249, 635, 1049, 1218
MslI CAYNNNNRTG 1 cut(s) 785
MspCI CTTAAG 1 cut(s) 634
MspI CCGG 3 cut(s) 367, 1017, 1179
MspR9I CCNGG 3 cut(s) 695, 1127, 1180
MunI CAATTG 2 cut(s) 314, 813
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 2 cut(s) 695, 1127
MwoI GCNNNNNNNGC 4 cut(s) 234, 695, 830, 1136
NciI CCSGG 1 cut(s) 1180
NdeII GATC 6 cut(s) 214, 279, 910, 964, 1039, 1149
NheI GCTAGC 1 cut(s) 224
NlaIII CATG 5 cut(s) 166, 173, 345, 576, 654
NmuCI GTSAC 2 cut(s) 778, 931
NspI RCATGY 3 cut(s) 173, 345, 576
OliI CACNNNNGTG 1 cut(s) 785
PaeI GCATGC 1 cut(s) 173
PceI AGGCCT 1 cut(s) 771
PciI ACATGT 1 cut(s) 341
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 2 cut(s) 623, 893
PflFI GACNNNGTC 1 cut(s) 1180
PkrI GCNGC 3 cut(s) 58, 412, 616
PleI GAGTC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 590
PscI ACATGT 1 cut(s) 341
PshBI ATTAAT 2 cut(s) 66, 249
Psp124BI GAGCTC 2 cut(s) 560, 808
Psp1406I AACGTT 1 cut(s) 708
Psp6I CCWGG 2 cut(s) 693, 1125
PspFI CCCAGC 2 cut(s) 158, 664
PspGI CCWGG 2 cut(s) 693, 1125
PspPI GGNCC 3 cut(s) 875, 1024, 1093
PstI CTGCAG 1 cut(s) 1211
PsyI GACNNNGTC 1 cut(s) 1180
RsaI GTAC 3 cut(s) 13, 322, 1081
RsaNI GTAC 3 cut(s) 12, 321, 1080
RseI CAYNNNNRTG 1 cut(s) 785
SacI GAGCTC 2 cut(s) 560, 808
SaqAI TTAA 7 cut(s) 66, 102, 114, 249, 635, 1049, 1218
SatI GCNGC 3 cut(s) 57, 411, 615
Sau3AI GATC 6 cut(s) 214, 279, 910, 964, 1039, 1149
Sau96I GGNCC 3 cut(s) 875, 1024, 1093
ScaI AGTACT 1 cut(s) 1081
SchI GAGTC 1 cut(s) 591
ScrFI CCNGG 3 cut(s) 695, 1127, 1180
SduI GDGCHC 3 cut(s) 159, 560, 808
SfaNI GCATC 3 cut(s) 451, 535, 730
SfcI CTRYAG 4 cut(s) 203, 914, 1102, 1207
SinI GGWCC 2 cut(s) 875, 1093
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 1 cut(s) 634
SmoI CTYRAG 1 cut(s) 634
SphI GCATGC 1 cut(s) 173
SseBI AGGCCT 1 cut(s) 771
SsiI CCGC 1 cut(s) 956
SspMI CTAG 7 cut(s) 35, 135, 179, 209, 225, 975, 1056
SstI GAGCTC 2 cut(s) 560, 808
StuI AGGCCT 1 cut(s) 771
StyD4I CCNGG 3 cut(s) 693, 1125, 1178
StyI CCWWGG 1 cut(s) 862
TaaI ACNGT 2 cut(s) 455, 852
TaiI ACGT 4 cut(s) 516, 711, 789, 890
TaqI TCGA 4 cut(s) 467, 477, 543, 987
TatI WGTACW 2 cut(s) 11, 1079
TfiI GAWTC 2 cut(s) 623, 893
Tru1I TTAA 7 cut(s) 66, 102, 114, 249, 635, 1049, 1218
Tru9I TTAA 7 cut(s) 66, 102, 114, 249, 635, 1049, 1218
TscAI CASTG 2 cut(s) 958, 1179
TseFI GTSAC 2 cut(s) 778, 931
TseI GCWGC 3 cut(s) 56, 410, 614
Tsp45I GTSAC 2 cut(s) 778, 931
TspDTI ATGAA 3 cut(s) 84, 179, 639
TspGWI ACGGA 3 cut(s) 338, 550, 957
TspRI CASTG 2 cut(s) 958, 1179
Tth111I GACNNNGTC 1 cut(s) 1180
Vha464I CTTAAG 1 cut(s) 634
VpaK11BI GGWCC 2 cut(s) 875, 1093
VspI ATTAAT 2 cut(s) 66, 249
XapI RAATTY 4 cut(s) 184, 517, 646, 1006
XbaI TCTAGA 1 cut(s) 974
XceI RCATGY 3 cut(s) 173, 345, 576
XcmI CCANNNNNNNNNTGG 2 cut(s) 869, 1123
XspI CTAG 7 cut(s) 35, 135, 179, 209, 225, 975, 1056
ZrmI AGTACT 1 cut(s) 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.