Rh5DG558900

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009944
Physical Location & Seq
Forward (+)
86224959 .. 86226170
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG558900.1

Sequence Viewer

Length: 822 bp
ATGGCTGCTTCTTTGCTTCGGCTGCACTTCCACGACTGCTTTGTCAACGGTTGTGATGCGTCGGTACTACTCGATTTACCTGATGGCGAGAAGGCTGCCGTTCCGAACGTGAATTCGGCAAGAGGGTTTGAAGTTATCGATGCAATCAAGAGCTCCGTGGAGAGTGCATGTAGTGGAGTTGTTTCTTGTGCTGATATACTAACCGTAGCTGCCCGAGATTCTGTGGTCTTGAGTGGAGGAAATTCATGGAAAGTTTTGGTGGGAAGAAGAGACGGGTTGGTGGCAAACCAGACAGGAGCAAATGTTGGGCTTCCTTCTCCATTTGACAAACTTGATGTCATCATTTCCAAGTTTGCCACTGTAGGCCTAAGTGTCACAGACGTGGTAGCCTTATCAGGAGCTCATACAATTGGGTTAGCAAGGTGTGCGACTTTCAGCAACAGATTGTTCAACTTCGAAGGAACAGGTGGTCCAGACAGCACGTTAGATTCAAGTATGGCAACTGATCTACAGAACCTATGCCCTGTGACCAGCGACGGAAACAACACTGCGGTTCTCGATCGGAACTCTAGAGATTTATTCGACAACCATTACTTTCAGAACTTGCTCACCGGAAGGGGCCTTCTCGGTTCTGATCAGCTTTTAATTTCTAGTGATTTAGCCGATACAACAAGTACCAAGAGCTTGGTCCAAAGCTATAGCTCTAGTTCCAACCTTTTCCTGACAGATTTTGCTAATTCTATGATCAAAATGGGAAGTATAAGTCCACTTACCGGGTCTGCTGGAGAGATAAGAAAGAACTGCAGGGTTGTTAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

273

Amino Acids

28.57

Weight (kDa)

5.0

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 1 - 235 5.4e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AciI CCGC 1 cut(s) 551
AcsI RAATTY 2 cut(s) 112, 241
AfaI GTAC 2 cut(s) 66, 676
AfiI CCNNNNNNNGG 1 cut(s) 773
AgsI TTSAA 3 cut(s) 131, 451, 492
AjiI CACGTC 1 cut(s) 382
AleI CACNNNNGTG 1 cut(s) 380
AloI GAACNNNNNNTCC 2 cut(s) 454, 486
AluBI AGCT 7 cut(s) 153, 209, 401, 640, 684, 696, 702
AluI AGCT 7 cut(s) 153, 209, 401, 640, 684, 696, 702
Alw21I GWGCWC 2 cut(s) 155, 403
Alw26I GTCTC 1 cut(s) 264
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 2 cut(s) 364, 619
ApeKI GCWGC 4 cut(s) 5, 22, 95, 209
ApoI RAATTY 2 cut(s) 112, 241
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AspS9I GGNCC 3 cut(s) 470, 619, 688
AsuC2I CCSGG 1 cut(s) 775
AsuHPI GGTGA 1 cut(s) 601
AsuII TTCGAA 1 cut(s) 456
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 2 cut(s) 470, 688
BanII GRGCYC 2 cut(s) 155, 403
Bbv12I GWGCWC 2 cut(s) 155, 403
BbvI GCAGC 3 cut(s) 9, 82, 196
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BclI TGATCA 2 cut(s) 634, 744
BcnI CCSGG 1 cut(s) 775
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 3 cut(s) 570, 651, 705
BfmI CTRYAG 4 cut(s) 360, 509, 697, 802
BisI GCNGC 4 cut(s) 6, 23, 96, 210
BlsI GCNGC 4 cut(s) 7, 24, 97, 211
Bme1390I CCNGG 1 cut(s) 775
Bme18I GGWCC 2 cut(s) 470, 688
BmeT110I CYCGRG 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 3 cut(s) 470, 619, 688
BmiI GGNNCC 1 cut(s) 620
BmrFI CCNGG 1 cut(s) 775
BmsI GCATC 2 cut(s) 46, 130
BpmI CTGGAG 1 cut(s) 804
Bpu14I TTCGAA 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 250
BpuMI CCSGG 1 cut(s) 775
Bsa29I ATCGAT 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 611
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 773
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 773
BseXI GCAGC 3 cut(s) 9, 82, 196
BsgI GTGCAG 1 cut(s) 8
Bsh1285I CGRYCG 1 cut(s) 562
BshFI GGCC 2 cut(s) 366, 621
BshVI ATCGAT 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 562
BsiHKAI GWGCWC 2 cut(s) 155, 403
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 2 cut(s) 612, 774
BslI CCNNNNNNNGG 1 cut(s) 773
BsmAI GTCTC 1 cut(s) 264
BsmBI CGTCTC 1 cut(s) 264
BsnI GGCC 2 cut(s) 366, 621
BsoBI CYCGRG 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 456
Bsp1286I GDGCHC 2 cut(s) 155, 403
Bsp143I GATC 4 cut(s) 505, 559, 634, 744
BspACI CCGC 1 cut(s) 551
BspANI GGCC 2 cut(s) 366, 621
BspDI ATCGAT 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 620
BspMAI CTGCAG 1 cut(s) 806
BspT104I TTCGAA 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 4 cut(s) 505, 559, 634, 744
Bst4CI ACNGT 3 cut(s) 50, 205, 361
Bst6I CTCTTC 1 cut(s) 262
BstAPI GCANNNNNTGC 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 456
BstDEI CTNAG 1 cut(s) 368
BstDSI CCRYGG 1 cut(s) 156
BstKTI GATC 4 cut(s) 508, 562, 637, 747
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 4 cut(s) 505, 559, 634, 744
BstMCI CGRYCG 1 cut(s) 562
BstMWI GCNNNNNNNGC 2 cut(s) 22, 425
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 773
BstSFI CTRYAG 4 cut(s) 360, 509, 697, 802
BstV1I GCAGC 3 cut(s) 9, 82, 196
BstXI CCANNNNNNTGG 1 cut(s) 685
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 2 cut(s) 366, 621
BsuTUI ATCGAT 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 156
BtrI CACGTC 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 2 cut(s) 357, 546
Cfr13I GGNCC 3 cut(s) 470, 619, 688
ClaI ATCGAT 1 cut(s) 138
CseI GACGC 1 cut(s) 48
Csp6I GTAC 2 cut(s) 65, 675
CviAII CATG 2 cut(s) 168, 246
CviQI GTAC 2 cut(s) 65, 675
DdeI CTNAG 1 cut(s) 368
DpnI GATC 4 cut(s) 507, 561, 636, 746
DpnII GATC 4 cut(s) 505, 559, 634, 744
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Ecl136II GAGCTC 2 cut(s) 153, 401
Eco147I AGGCCT 1 cut(s) 366
Eco24I GRGCYC 2 cut(s) 155, 403
Eco47I GGWCC 2 cut(s) 470, 688
Eco53kI GAGCTC 2 cut(s) 153, 401
Eco88I CYCGRG 1 cut(s) 213
EcoICRI GAGCTC 2 cut(s) 153, 401
EcoO109I RGGNCCY 1 cut(s) 619
EcoRI GAATTC 1 cut(s) 112
EcoT38I GRGCYC 2 cut(s) 155, 403
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 2 cut(s) 171, 249
FaiI YATR 9 cut(s) 169, 197, 247, 405, 497, 520, 699, 743, 761
FatI CATG 2 cut(s) 167, 245
FbaI TGATCA 2 cut(s) 634, 744
Fnu4HI GCNGC 4 cut(s) 6, 23, 96, 210
FriOI GRGCYC 2 cut(s) 155, 403
Fsp4HI GCNGC 4 cut(s) 6, 23, 96, 210
FspBI CTAG 3 cut(s) 570, 651, 705
GluI GCNGC 4 cut(s) 6, 23, 96, 210
GsuI CTGGAG 1 cut(s) 804
HaeIII GGCC 2 cut(s) 366, 621
HapII CCGG 2 cut(s) 612, 774
HgaI GACGC 1 cut(s) 48
Hin1II CATG 2 cut(s) 171, 249
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 2 cut(s) 218, 488
HpaII CCGG 2 cut(s) 612, 774
HphI GGTGA 1 cut(s) 601
Hpy166II GTNNAC 2 cut(s) 46, 767
Hpy188I TCNGA 4 cut(s) 105, 564, 600, 634
Hpy188III TCNNGA 8 cut(s) 148, 229, 396, 473, 557, 570, 721, 819
Hpy8I GTNNAC 2 cut(s) 46, 767
Hpy99I CGWCG 2 cut(s) 64, 539
HpyAV CCTTC 5 cut(s) 85, 324, 452, 609, 632
HpyCH4III ACNGT 3 cut(s) 50, 205, 361
HpyCH4IV ACGT 3 cut(s) 108, 381, 482
HpyCH4V TGCA 4 cut(s) 25, 143, 167, 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 425
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 3 cut(s) 108, 381, 482
Hsp92II CATG 2 cut(s) 171, 249
Ksp22I TGATCA 2 cut(s) 634, 744
Kzo9I GATC 4 cut(s) 505, 559, 634, 744
LmnI GCTCC 3 cut(s) 158, 296, 398
Lsp1109I GCAGC 3 cut(s) 9, 82, 196
LweI GCATC 2 cut(s) 46, 130
MaeI CTAG 3 cut(s) 570, 651, 705
MaeII ACGT 3 cut(s) 108, 381, 482
MaeIII GTNAC 2 cut(s) 373, 526
MalI GATC 4 cut(s) 507, 561, 636, 746
MboI GATC 4 cut(s) 505, 559, 634, 744
MboII GAAGA 2 cut(s) 276, 279
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 155, 403
MluCI AATT 6 cut(s) 112, 241, 408, 645, 736, 814
MmeI TCCRAC 1 cut(s) 735
MnlI CCTC 2 cut(s) 116, 230
MseI TTAA 2 cut(s) 644, 813
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 2 cut(s) 612, 774
MspR9I CCNGG 1 cut(s) 775
MunI CAATTG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 22, 425
NciI CCSGG 1 cut(s) 775
NdeII GATC 4 cut(s) 505, 559, 634, 744
NlaIII CATG 2 cut(s) 171, 249
NlaIV GGNNCC 1 cut(s) 620
NmuCI GTSAC 2 cut(s) 373, 526
NspI RCATGY 1 cut(s) 171
NspV TTCGAA 1 cut(s) 456
OliI CACNNNNGTG 1 cut(s) 380
PceI AGGCCT 1 cut(s) 366
PfeI GAWTC 2 cut(s) 218, 488
PkrI GCNGC 4 cut(s) 7, 24, 97, 211
Ple19I CGATCG 1 cut(s) 562
Psp124BI GAGCTC 2 cut(s) 155, 403
PspN4I GGNNCC 1 cut(s) 620
PspPI GGNCC 3 cut(s) 470, 619, 688
PstI CTGCAG 1 cut(s) 806
PvuI CGATCG 1 cut(s) 562
RsaI GTAC 2 cut(s) 66, 676
RsaNI GTAC 2 cut(s) 65, 675
RseI CAYNNNNRTG 1 cut(s) 380
SacI GAGCTC 2 cut(s) 155, 403
SaqAI TTAA 2 cut(s) 644, 813
SatI GCNGC 4 cut(s) 6, 23, 96, 210
Sau3AI GATC 4 cut(s) 505, 559, 634, 744
Sau96I GGNCC 3 cut(s) 470, 619, 688
ScrFI CCNGG 1 cut(s) 775
SduI GDGCHC 2 cut(s) 155, 403
SfaNI GCATC 2 cut(s) 46, 130
SfcI CTRYAG 4 cut(s) 360, 509, 697, 802
SfuI TTCGAA 1 cut(s) 456
SinI GGWCC 2 cut(s) 470, 688
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 6 cut(s) 112, 241, 408, 645, 736, 814
SseBI AGGCCT 1 cut(s) 366
SsiI CCGC 1 cut(s) 551
SspMI CTAG 3 cut(s) 570, 651, 705
SstI GAGCTC 2 cut(s) 155, 403
StuI AGGCCT 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 773
TaaI ACNGT 3 cut(s) 50, 205, 361
TaiI ACGT 3 cut(s) 111, 384, 485
TaqI TCGA 5 cut(s) 72, 138, 456, 558, 582
TasI AATT 6 cut(s) 112, 241, 408, 645, 736, 814
TfiI GAWTC 2 cut(s) 218, 488
Tru1I TTAA 2 cut(s) 644, 813
Tru9I TTAA 2 cut(s) 644, 813
TscAI CASTG 2 cut(s) 364, 553
TseFI GTSAC 2 cut(s) 373, 526
TseI GCWGC 4 cut(s) 5, 22, 95, 209
Tsp45I GTSAC 2 cut(s) 373, 526
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 2 cut(s) 145, 552
TspRI CASTG 2 cut(s) 364, 553
VpaK11BI GGWCC 2 cut(s) 470, 688
XapI RAATTY 2 cut(s) 112, 241
XbaI TCTAGA 1 cut(s) 569
XceI RCATGY 1 cut(s) 171
XspI CTAG 3 cut(s) 570, 651, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.