MD11G1015400.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009944
Physical Location & Seq
Reverse (-)
1220317 .. 1222110
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1015400.v1.1.491

Sequence Viewer

Length: 999 bp
ATGACAAGGTCATCGATTAATTTTAGCCGTCGTTACTCTTTGGCAATGATCACGTTCTTTGCCTTGTGTTTTGTCGCGAAAGCCCAGTTAAGTACAGATTTCTACAAGGCAACATGTCCGGATGTTCTCAAAATTGTCCGAAGAGAGGTTCTGAACGCTGTCAAGTCTGAAATGCGAATGGCTGCTTCTTTGCTTCGGCTTCACTTCCATGACTGCTTTGTCAATGGTTGTGATGCGTCACTGCTACTGGATGGAACTGATAGTGAGAAGAATGCCCGCCCAAATTTGAATTCAGCAAGAGGGTTTGAAGTCGTTGACAGAATCAAGAGCTCTGTGGAGAGCTCATGTAGCGGAGTTGTGTCGTGTGCTGATATACTAGCCATAGCTGCTAGAGATTCTGTGCTCTTAAGTGGAGGAACTTCATGGAAAGTTCTACTTGGAAGAAGAGATGGTCTAGTGGCAAATCAGTCAGGAGCAAACAGTGGACTTCCTGCGCCAACTGAAGCCCTAGATATCATCATTTCCAAGTTTGCCGCTGTGGGCCTAAATATCACAGACGTTGTGTCCTTATCAGGAGCTCATACAATTGGGTTGGCACGGTGTGCCACTTTCAGCAATAGACTCTTCAACTTCTCAGGAACAGGTGCTCCTGACAGTACATTGGAACAAAGCATGCTAACTGATCTACAGAACCAGTGTCCGCAGACCAGTGATGGAAACAATACCGCGCCTTTAGATCGGAACTCAACCGATCTATTTGACAACCATTACTTTCAGAACTTGATTAACGGGAAGGGCCTCCTAGGTTCAGATCAAATTCTATTTTCTAGTGATGCAGCTGTGACAACAGGGACTAAAAGTTTGGTCCAAAGCTATAACTCAAATCTTAATCTGTTCTTAGCTGATTTTGCTAATTCTATGATCAAGATGGGGAATATTAGTCCTCTTACTGGGTCTGCTGGAGAGATCAGATTGAACTGCAGGGCTGTTAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

333

Amino Acids

35.49

Weight (kDa)

6.88

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 294 2.7e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AccII CGCG 2 cut(s) 77, 728
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 5 cut(s) 277, 351, 534, 701, 726
AcsI RAATTY 3 cut(s) 283, 289, 816
AcuI CTGAAG 1 cut(s) 522
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 2 cut(s) 94, 658
AfiI CCNNNNNNNGG 2 cut(s) 145, 950
AflII CTTAAG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 4 cut(s) 289, 308, 628, 976
AhdI GACNNNNNGTC 1 cut(s) 562
AjuI GAANNNNNNNTTGG 2 cut(s) 274, 306
AloI GAACNNNNNNTCC 2 cut(s) 631, 663
AluBI AGCT 7 cut(s) 330, 342, 386, 578, 839, 873, 902
AluI AGCT 7 cut(s) 330, 342, 386, 578, 839, 873, 902
Alw21I GWGCWC 5 cut(s) 332, 344, 405, 580, 649
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 2 cut(s) 541, 796
ApeKI GCWGC 3 cut(s) 182, 386, 836
ApoI RAATTY 3 cut(s) 283, 289, 816
ArsI GACNNNNNNTTYG 2 cut(s) 844, 876
AseI ATTAAT 1 cut(s) 18
AspA2I CCTAGG 1 cut(s) 802
AspLEI GCGC 2 cut(s) 496, 730
AspS9I GGNCC 3 cut(s) 541, 796, 865
AvaII GGWCC 1 cut(s) 865
AvrII CCTAGG 1 cut(s) 802
BanII GRGCYC 3 cut(s) 332, 344, 580
Bbv12I GWGCWC 5 cut(s) 332, 344, 405, 580, 649
BbvI GCAGC 3 cut(s) 169, 373, 848
BccI CCATC 4 cut(s) 245, 443, 707, 922
BceAI ACGGC 1 cut(s) 12
BclI TGATCA 2 cut(s) 48, 921
BfaI CTAG 6 cut(s) 377, 390, 455, 509, 803, 828
BfmI CTRYAG 2 cut(s) 686, 979
BfrI CTTAAG 1 cut(s) 406
BisI GCNGC 4 cut(s) 183, 387, 534, 837
BlnI CCTAGG 1 cut(s) 802
BlsI GCNGC 4 cut(s) 184, 388, 535, 838
Bme18I GGWCC 1 cut(s) 865
BmeRI GACNNNNNGTC 1 cut(s) 562
BmgT120I GGNCC 3 cut(s) 541, 796, 865
BmrI ACTGGG 2 cut(s) 79, 960
BmsI GCATC 2 cut(s) 223, 823
BmuI ACTGGG 2 cut(s) 79, 960
BpmI CTGGAG 1 cut(s) 981
Bsa29I ATCGAT 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 802
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 950
Bse1I ACTGG 5 cut(s) 85, 252, 694, 708, 955
Bse3DI GCAATG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 802
BseGI GGATG 2 cut(s) 127, 256
BseLI CCNNNNNNNGG 2 cut(s) 145, 950
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 5 cut(s) 85, 252, 694, 708, 955
BseXI GCAGC 3 cut(s) 169, 373, 848
Bsh1236I CGCG 2 cut(s) 77, 728
BshFI GGCC 2 cut(s) 543, 798
BshVI ATCGAT 1 cut(s) 14
BsiHKAI GWGCWC 5 cut(s) 332, 344, 405, 580, 649
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 865
BslI CCNNNNNNNGG 2 cut(s) 145, 950
BsmFI GGGAC 1 cut(s) 865
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 2 cut(s) 543, 798
Bsp1286I GDGCHC 5 cut(s) 332, 344, 405, 580, 649
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 7 cut(s) 48, 682, 736, 751, 811, 921, 966
Bsp68I TCGCGA 1 cut(s) 77
BspACI CCGC 5 cut(s) 277, 351, 534, 701, 726
BspANI GGCC 2 cut(s) 543, 798
BspCNI CTCAG 1 cut(s) 647
BspDI ATCGAT 1 cut(s) 14
BspEI TCCGGA 1 cut(s) 118
BspFNI CGCG 2 cut(s) 77, 728
BspMAI CTGCAG 1 cut(s) 983
BspTI CTTAAG 1 cut(s) 406
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 5 cut(s) 85, 252, 694, 708, 955
BssECI CCNNGG 1 cut(s) 802
BssMI GATC 7 cut(s) 48, 682, 736, 751, 811, 921, 966
BssT1I CCWWGG 1 cut(s) 802
Bst4CI ACNGT 3 cut(s) 482, 600, 656
Bst6I CTCTTC 3 cut(s) 136, 439, 629
BstAFI CTTAAG 1 cut(s) 406
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 277, 674
BstDEI CTNAG 2 cut(s) 634, 898
BstF5I GGATG 2 cut(s) 127, 256
BstFNI CGCG 2 cut(s) 77, 728
BstHHI GCGC 2 cut(s) 496, 730
BstKTI GATC 7 cut(s) 51, 685, 739, 754, 814, 924, 969
BstMBI GATC 7 cut(s) 48, 682, 736, 751, 811, 921, 966
BstMWI GCNNNNNNNGC 5 cut(s) 348, 386, 602, 908, 992
BstNSI RCATGY 2 cut(s) 117, 676
BstSFI CTRYAG 2 cut(s) 686, 979
BstUI CGCG 2 cut(s) 77, 728
BstV1I GCAGC 3 cut(s) 169, 373, 848
Bsu15I ATCGAT 1 cut(s) 14
BsuRI GGCC 2 cut(s) 543, 798
BsuTUI ATCGAT 1 cut(s) 14
BtsCI GGATG 2 cut(s) 127, 256
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 4 cut(s) 239, 487, 701, 715
BtuMI TCGCGA 1 cut(s) 77
Cac8I GCNNGC 2 cut(s) 277, 674
CfoI GCGC 2 cut(s) 496, 730
Cfr13I GGNCC 3 cut(s) 541, 796, 865
ClaI ATCGAT 1 cut(s) 14
CseI GACGC 1 cut(s) 225
Csp6I GTAC 2 cut(s) 93, 657
CviAII CATG 6 cut(s) 114, 209, 345, 423, 673, 996
CviQI GTAC 2 cut(s) 93, 657
DdeI CTNAG 2 cut(s) 634, 898
DpnI GATC 7 cut(s) 50, 684, 738, 753, 813, 923, 968
DpnII GATC 7 cut(s) 48, 682, 736, 751, 811, 921, 966
DraIII CACNNNGTG 1 cut(s) 602
DrdI GACNNNNNNGTC 1 cut(s) 218
DriI GACNNNNNGTC 1 cut(s) 562
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 3 cut(s) 136, 439, 629
Eam1105I GACNNNNNGTC 1 cut(s) 562
EarI CTCTTC 3 cut(s) 136, 439, 629
Ecl136II GAGCTC 3 cut(s) 330, 342, 578
Eco130I CCWWGG 1 cut(s) 802
Eco24I GRGCYC 3 cut(s) 332, 344, 580
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 865
Eco53kI GAGCTC 3 cut(s) 330, 342, 578
Eco57I CTGAAG 1 cut(s) 522
EcoICRI GAGCTC 3 cut(s) 330, 342, 578
EcoO109I RGGNCCY 1 cut(s) 796
EcoRI GAATTC 1 cut(s) 289
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 802
EcoT22I ATGCAT 1 cut(s) 997
EcoT38I GRGCYC 3 cut(s) 332, 344, 580
ErhI CCWWGG 1 cut(s) 802
FaeI CATG 6 cut(s) 117, 212, 348, 426, 676, 999
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 865
FatI CATG 6 cut(s) 113, 208, 344, 422, 672, 995
FauI CCCGC 1 cut(s) 284
FbaI TGATCA 2 cut(s) 48, 921
Fnu4HI GCNGC 4 cut(s) 183, 387, 534, 837
FokI GGATG 2 cut(s) 134, 263
FriOI GRGCYC 3 cut(s) 332, 344, 580
Fsp4HI GCNGC 4 cut(s) 183, 387, 534, 837
FspBI CTAG 6 cut(s) 377, 390, 455, 509, 803, 828
GlaI GCGC 2 cut(s) 495, 729
GluI GCNGC 4 cut(s) 183, 387, 534, 837
GsuI CTGGAG 1 cut(s) 981
HaeIII GGCC 2 cut(s) 543, 798
HapII CCGG 1 cut(s) 119
HgaI GACGC 1 cut(s) 225
HhaI GCGC 2 cut(s) 496, 730
Hin1II CATG 6 cut(s) 117, 212, 348, 426, 676, 999
Hin6I GCGC 2 cut(s) 494, 728
HinP1I GCGC 2 cut(s) 494, 728
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 3 cut(s) 321, 395, 621
HpaII CCGG 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 316, 485
Hpy188I TCNGA 7 cut(s) 140, 153, 169, 741, 777, 811, 971
Hpy188III TCNNGA 8 cut(s) 76, 119, 325, 471, 573, 636, 650, 925
Hpy8I GTNNAC 2 cut(s) 316, 485
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 787
HpyCH4III ACNGT 3 cut(s) 482, 600, 656
HpyCH4IV ACGT 2 cut(s) 53, 558
HpyCH4V TGCA 3 cut(s) 836, 981, 995
HpyF10VI GCNNNNNNNGC 5 cut(s) 348, 386, 602, 908, 992
HpyF3I CTNAG 2 cut(s) 634, 898
HpySE526I ACGT 2 cut(s) 53, 558
Hsp92II CATG 6 cut(s) 117, 212, 348, 426, 676, 999
HspAI GCGC 2 cut(s) 494, 728
Kpn2I TCCGGA 1 cut(s) 118
Ksp22I TGATCA 2 cut(s) 48, 921
Kzo9I GATC 7 cut(s) 48, 682, 736, 751, 811, 921, 966
LmnI GCTCC 3 cut(s) 473, 575, 652
Lsp1109I GCAGC 3 cut(s) 169, 373, 848
LweI GCATC 2 cut(s) 223, 823
MaeI CTAG 6 cut(s) 377, 390, 455, 509, 803, 828
MaeII ACGT 2 cut(s) 53, 558
MaeIII GTNAC 3 cut(s) 32, 237, 841
MalI GATC 7 cut(s) 50, 684, 738, 753, 813, 923, 968
MboI GATC 7 cut(s) 48, 682, 736, 751, 811, 921, 966
MboII GAAGA 5 cut(s) 153, 280, 453, 456, 616
MfeI CAATTG 1 cut(s) 585
MhlI GDGCHC 5 cut(s) 332, 344, 405, 580, 649
MluCI AATT 7 cut(s) 19, 132, 283, 289, 585, 816, 913
MlyI GAGTC 1 cut(s) 615
MnlI CCTC 5 cut(s) 139, 293, 407, 809, 954
Mph1103I ATGCAT 1 cut(s) 997
MroI TCCGGA 1 cut(s) 118
MseI TTAA 6 cut(s) 18, 89, 407, 786, 888, 990
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 2 cut(s) 536, 839
MspCI CTTAAG 1 cut(s) 406
MspI CCGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 277
MvnI CGCG 2 cut(s) 77, 728
MwoI GCNNNNNNNGC 5 cut(s) 348, 386, 602, 908, 992
NdeII GATC 7 cut(s) 48, 682, 736, 751, 811, 921, 966
NlaIII CATG 6 cut(s) 117, 212, 348, 426, 676, 999
NmuCI GTSAC 2 cut(s) 237, 841
NruI TCGCGA 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 997
NspI RCATGY 2 cut(s) 117, 676
PaeI GCATGC 1 cut(s) 676
PciI ACATGT 1 cut(s) 113
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 321, 395
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 4 cut(s) 184, 388, 535, 838
PleI GAGTC 1 cut(s) 615
PpsI GAGTC 1 cut(s) 615
PscI ACATGT 1 cut(s) 113
PshBI ATTAAT 1 cut(s) 18
Psp124BI GAGCTC 3 cut(s) 332, 344, 580
PspPI GGNCC 3 cut(s) 541, 796, 865
PstI CTGCAG 1 cut(s) 983
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 839
RruI TCGCGA 1 cut(s) 77
RsaI GTAC 2 cut(s) 94, 658
RsaNI GTAC 2 cut(s) 93, 657
RseI CAYNNNNRTG 1 cut(s) 207
SacI GAGCTC 3 cut(s) 332, 344, 580
SaqAI TTAA 6 cut(s) 18, 89, 407, 786, 888, 990
SatI GCNGC 4 cut(s) 183, 387, 534, 837
Sau3AI GATC 7 cut(s) 48, 682, 736, 751, 811, 921, 966
Sau96I GGNCC 3 cut(s) 541, 796, 865
SchI GAGTC 1 cut(s) 615
SduI GDGCHC 5 cut(s) 332, 344, 405, 580, 649
SfaNI GCATC 2 cut(s) 223, 823
SfcI CTRYAG 2 cut(s) 686, 979
SinI GGWCC 1 cut(s) 865
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SphI GCATGC 1 cut(s) 676
Sse9I AATT 7 cut(s) 19, 132, 283, 289, 585, 816, 913
SsiI CCGC 5 cut(s) 277, 351, 534, 701, 726
SspI AATATT 1 cut(s) 937
SspMI CTAG 6 cut(s) 377, 390, 455, 509, 803, 828
SstI GAGCTC 3 cut(s) 332, 344, 580
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 3 cut(s) 482, 600, 656
TaiI ACGT 2 cut(s) 56, 561
TaqI TCGA 1 cut(s) 14
TasI AATT 7 cut(s) 19, 132, 283, 289, 585, 816, 913
TatI WGTACW 2 cut(s) 92, 656
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 2 cut(s) 321, 395
Tru1I TTAA 6 cut(s) 18, 89, 407, 786, 888, 990
Tru9I TTAA 6 cut(s) 18, 89, 407, 786, 888, 990
TscAI CASTG 4 cut(s) 246, 487, 701, 715
TseFI GTSAC 2 cut(s) 237, 841
TseI GCWGC 3 cut(s) 182, 386, 836
Tsp45I GTSAC 2 cut(s) 237, 841
TspDTI ATGAA 1 cut(s) 411
TspRI CASTG 4 cut(s) 246, 487, 701, 715
Tth111I GACNNNGTC 1 cut(s) 7
Vha464I CTTAAG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 865
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 3 cut(s) 283, 289, 816
XceI RCATGY 2 cut(s) 117, 676
XmaJI CCTAGG 1 cut(s) 802
XspI CTAG 6 cut(s) 377, 390, 455, 509, 803, 828
Zsp2I ATGCAT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.