Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003177.1

Orthogroup ID

OG0009944

Physical Location & Seq

Genomic Coordinates Forward (+)

8359 .. 9703

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003177.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgatcttatttgcattgagttcggttgtgaaagcccaattgagtacggatttctaccagcaaacatgtccaaatcttctcaaaatcgtccggacagaggttcagaatgctatcaaatccgaaatgcgaatggctgcttctttgcttcggcttcacttccacgactgctttgtcaacggttgtgatgcgtcgatactactcgatttacctgatggtgagaagtctgcctttccgaacgtgaattcagcgagagggtttgaagttatcgatgcaatcaaaagctccgtggagagcgcatgtagtggagttgtttcttgtgctgatatactaaccatagctgcccgagattctgtggtcttaagtggaggaaattcatggaaagttttgctgggaagaagagacgggtttgtggcaaaccagacaggagcaaatgttgggcttccttctccatttgacacacttgatgccatcatttccaagttcgccactgtaggcctaaatgtcacagacgtggtagccttatcaggagctcatacaattgggttagcaaggtgtgcaactttcagcaacagattgttcaacttccaaggaacaggtggtccagacagcacgttagattcaagtatggcaactgaactacagaacctatgccctgtgaccagcgacggaaacaacactgcggctcttgatcggaactctagagatttattcgacaacctttactttcagaacttgctcaccggaaagggccttctcggttctgatcagattttattttctagtgatttagccgatacaacaagtaccaagagcttggtccaaagctatagctctagttccaaccttttcctgacagattttgctaattctatgatcaaaatgggaagtataggtccactcaccgggtctgctggagagataagaaagaactgcagggttgttaattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

316

Amino Acids

33.52

Weight (kDa)

5.21

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19890
fragaria_vesca	FvH4_3g44351
malus_domestica	MD03G1014500.v1.1 MD11G1015400.v1.1
prunus_persica	Prupe.6G013700_v2.0.a1 Prupe.6G013800_v2.0.a1
pyrus_communis	pycom03g01190 pycom11g01090
rosa_chinensis	RchiOBHm_Chr5g0080741
rosa_laevigata	RLG00000012515 RLG00000036890
rosa_multiflora	Rmu_sc0003177.1_g000002 Rmu_sc0003177.1_g000006
rosa_roxburghii	Rroxscaffold_1G00002690
rosa_rugosa	Rorug05G0471700
rosa_samantha	Rh5AG525300 Rh5BG547700 Rh5CG571200 Rh5DG557600 Rh5DG558900
rosa_wichuraiana	Rw5G049290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AccIII	TCCGGA	1 cut(s)	90
AciI	CCGC	1 cut(s)	680
AcsI	RAATTY	2 cut(s)	241, 370
AfaI	GTAC	2 cut(s)	46, 805
AfiI	CCNNNNNNNGG	2 cut(s)	97, 902
AflII	CTTAAG	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	3 cut(s)	260, 580, 621
AjiI	CACGTC	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	509
AloI	GAACNNNNNNTCC	2 cut(s)	583, 615
AluBI	AGCT	6 cut(s)	282, 338, 530, 813, 825, 831
AluI	AGCT	6 cut(s)	282, 338, 530, 813, 825, 831
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	393
Ama87I	CYCGRG	1 cut(s)	342
Aor13HI	TCCGGA	1 cut(s)	90
AoxI	GGCC	2 cut(s)	493, 748
ApeKI	GCWGC	2 cut(s)	134, 338
ApoI	RAATTY	2 cut(s)	241, 370
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	4 cut(s)	599, 748, 817, 893
AsuC2I	CCSGG	1 cut(s)	904
AsuHPI	GGTGA	3 cut(s)	227, 730, 892
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	3 cut(s)	599, 817, 893
BanII	GRGCYC	1 cut(s)	532
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	121, 325
BccI	CCATC	2 cut(s)	206, 476
BcgI	CGANNNNNNTGC	1 cut(s)	37
BclI	TGATCA	2 cut(s)	763, 873
BcnI	CCSGG	1 cut(s)	904
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	3 cut(s)	699, 780, 834
BfmI	CTRYAG	4 cut(s)	489, 638, 826, 931
BfrI	CTTAAG	1 cut(s)	358
BisI	GCNGC	3 cut(s)	135, 339, 681
BlsI	GCNGC	3 cut(s)	136, 340, 682
Bme1390I	CCNGG	1 cut(s)	904
Bme18I	GGWCC	3 cut(s)	599, 817, 893
BmeT110I	CYCGRG	1 cut(s)	342
BmgBI	CACGTC	1 cut(s)	511
BmgT120I	GGNCC	4 cut(s)	599, 748, 817, 893
BmrFI	CCNGG	1 cut(s)	904
BmsI	GCATC	3 cut(s)	175, 259, 454
BpmI	CTGGAG	1 cut(s)	933
BpuMI	CCSGG	1 cut(s)	904
Bsa29I	ATCGAT	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	285, 586
BsaWI	WCCGGW	2 cut(s)	90, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 902
BseAI	TCCGGA	1 cut(s)	90
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	285, 586
BseLI	CCNNNNNNNGG	2 cut(s)	97, 902
BseXI	GCAGC	2 cut(s)	121, 325
BseYI	CCCAGC	1 cut(s)	388
BshFI	GGCC	2 cut(s)	495, 750
BshVI	ATCGAT	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	532
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	3 cut(s)	91, 741, 903
BslI	CCNNNNNNNGG	2 cut(s)	97, 902
BsmAI	GTCTC	1 cut(s)	393
BsmBI	CGTCTC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	495, 750
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp13I	TCCGGA	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	3, 688, 763, 873
BspACI	CCGC	1 cut(s)	680
BspANI	GGCC	2 cut(s)	495, 750
BspDI	ATCGAT	1 cut(s)	267
BspEI	TCCGGA	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	935
BspTI	CTTAAG	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	285, 586
BssMI	GATC	4 cut(s)	3, 688, 763, 873
BssT1I	CCWWGG	1 cut(s)	586
Bst4CI	ACNGT	2 cut(s)	179, 490
Bst6I	CTCTTC	1 cut(s)	391
BstAFI	CTTAAG	1 cut(s)	358
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstDSI	CCRYGG	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	4 cut(s)	6, 691, 766, 876
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	4 cut(s)	3, 688, 763, 873
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNSI	RCATGY	2 cut(s)	69, 300
BstSCI	CCNGG	1 cut(s)	902
BstSFI	CTRYAG	4 cut(s)	489, 638, 826, 931
BstV1I	GCAGC	2 cut(s)	121, 325
BstXI	CCANNNNNNTGG	1 cut(s)	814
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	495, 750
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	285
BtrI	CACGTC	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	2 cut(s)	486, 675
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	4 cut(s)	599, 748, 817, 893
ClaI	ATCGAT	1 cut(s)	267
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	45, 804
CviAII	CATG	3 cut(s)	66, 297, 375
CviQI	GTAC	2 cut(s)	45, 804
DpnI	GATC	4 cut(s)	5, 690, 765, 875
DpnII	GATC	4 cut(s)	3, 688, 763, 873
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Ecl136II	GAGCTC	1 cut(s)	530
Eco130I	CCWWGG	1 cut(s)	586
Eco147I	AGGCCT	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	532
Eco47I	GGWCC	3 cut(s)	599, 817, 893
Eco53kI	GAGCTC	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	3 cut(s)	69, 300, 378
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	3 cut(s)	65, 296, 374
FbaI	TGATCA	2 cut(s)	763, 873
Fnu4HI	GCNGC	3 cut(s)	135, 339, 681
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	3 cut(s)	135, 339, 681
FspBI	CTAG	3 cut(s)	699, 780, 834
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	3 cut(s)	135, 339, 681
GsaI	CCCAGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	933
HaeIII	GGCC	2 cut(s)	495, 750
HapII	CCGG	3 cut(s)	91, 741, 903
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	69, 300, 378
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	347, 617
HpaII	CCGG	3 cut(s)	91, 741, 903
HphI	GGTGA	3 cut(s)	227, 730, 892
Hpy166II	GTNNAC	2 cut(s)	175, 896
Hpy188I	TCNGA	7 cut(s)	105, 121, 234, 693, 729, 763, 768
Hpy188III	TCNNGA	7 cut(s)	91, 525, 602, 686, 699, 850, 948
Hpy8I	GTNNAC	2 cut(s)	175, 896
Hpy99I	CGWCG	2 cut(s)	193, 668
HpyAV	CCTTC	2 cut(s)	453, 761
HpyCH4III	ACNGT	2 cut(s)	179, 490
HpyCH4IV	ACGT	3 cut(s)	237, 510, 611
HpyCH4V	TGCA	4 cut(s)	14, 272, 557, 933
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpySE526I	ACGT	3 cut(s)	237, 510, 611
Hsp92II	CATG	3 cut(s)	69, 300, 378
HspAI	GCGC	1 cut(s)	294
Kpn2I	TCCGGA	1 cut(s)	90
Ksp22I	TGATCA	2 cut(s)	763, 873
Kzo9I	GATC	4 cut(s)	3, 688, 763, 873
LmnI	GCTCC	3 cut(s)	287, 425, 527
Lsp1109I	GCAGC	2 cut(s)	121, 325
LweI	GCATC	3 cut(s)	175, 259, 454
MaeI	CTAG	3 cut(s)	699, 780, 834
MaeII	ACGT	3 cut(s)	237, 510, 611
MaeIII	GTNAC	2 cut(s)	502, 655
MalI	GATC	4 cut(s)	5, 690, 765, 875
MboI	GATC	4 cut(s)	3, 688, 763, 873
MboII	GAAGA	3 cut(s)	68, 405, 408
MfeI	CAATTG	2 cut(s)	38, 537
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	6 cut(s)	38, 241, 370, 537, 865, 943
MmeI	TCCRAC	1 cut(s)	864
MnlI	CCTC	3 cut(s)	91, 245, 359
MroI	TCCGGA	1 cut(s)	90
MseI	TTAA	2 cut(s)	359, 942
MslI	CAYNNNNRTG	1 cut(s)	509
MspCI	CTTAAG	1 cut(s)	358
MspI	CCGG	3 cut(s)	91, 741, 903
MspR9I	CCNGG	1 cut(s)	904
MunI	CAATTG	2 cut(s)	38, 537
Mva1269I	GAATGC	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	554
NciI	CCSGG	1 cut(s)	904
NdeII	GATC	4 cut(s)	3, 688, 763, 873
NlaIII	CATG	3 cut(s)	69, 300, 378
NmuCI	GTSAC	2 cut(s)	502, 655
NspI	RCATGY	2 cut(s)	69, 300
OliI	CACNNNNGTG	1 cut(s)	509
PceI	AGGCCT	1 cut(s)	495
PciI	ACATGT	1 cut(s)	65
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	347, 617
PkrI	GCNGC	3 cut(s)	136, 340, 682
PscI	ACATGT	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	388
PspPI	GGNCC	4 cut(s)	599, 748, 817, 893
PstI	CTGCAG	1 cut(s)	935
RsaI	GTAC	2 cut(s)	46, 805
RsaNI	GTAC	2 cut(s)	45, 804
RseI	CAYNNNNRTG	1 cut(s)	509
SacI	GAGCTC	1 cut(s)	532
SaqAI	TTAA	2 cut(s)	359, 942
SatI	GCNGC	3 cut(s)	135, 339, 681
Sau3AI	GATC	4 cut(s)	3, 688, 763, 873
Sau96I	GGNCC	4 cut(s)	599, 748, 817, 893
ScrFI	CCNGG	1 cut(s)	904
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	3 cut(s)	175, 259, 454
SfcI	CTRYAG	4 cut(s)	489, 638, 826, 931
SinI	GGWCC	3 cut(s)	599, 817, 893
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	6 cut(s)	38, 241, 370, 537, 865, 943
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	1 cut(s)	680
SspMI	CTAG	3 cut(s)	699, 780, 834
SstI	GAGCTC	1 cut(s)	532
StuI	AGGCCT	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	902
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	2 cut(s)	179, 490
TaiI	ACGT	3 cut(s)	240, 513, 614
TaqI	TCGA	4 cut(s)	191, 201, 267, 711
TasI	AATT	6 cut(s)	38, 241, 370, 537, 865, 943
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	2 cut(s)	347, 617
Tru1I	TTAA	2 cut(s)	359, 942
Tru9I	TTAA	2 cut(s)	359, 942
TscAI	CASTG	2 cut(s)	493, 682
TseFI	GTSAC	2 cut(s)	502, 655
TseI	GCWGC	2 cut(s)	134, 338
Tsp45I	GTSAC	2 cut(s)	502, 655
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	3 cut(s)	62, 274, 681
TspRI	CASTG	2 cut(s)	493, 682
Vha464I	CTTAAG	1 cut(s)	358
VpaK11BI	GGWCC	3 cut(s)	599, 817, 893
XapI	RAATTY	2 cut(s)	241, 370
XbaI	TCTAGA	1 cut(s)	698
XceI	RCATGY	2 cut(s)	69, 300
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XspI	CTAG	3 cut(s)	699, 780, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.