Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009223

Physical Location & Seq

Genomic Coordinates Forward (+)

6743878 .. 6746381

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGACGATGGACGATGGTAACTCCGTCTACGTCGGCGGCCTCCCTTACGACATCACCGAGGAGGCTGTCCGTCGCGTCTTCTCCATTTACGGCTCCGTCCTCACCGTTAAGATTGTCAATGACCGGAGTGTAAGAGGGAAATGCTATGGCTTTGTTACATTTTCGAACCGTCGATCGGCTGATGATGCTATCGAAGATATGGATGGAAAAAGTATTGGTGGGCGTGCAGTGCGTGTGAATGATGTGACAACAAGAGGTGGAAGAATGAATCCAGGTCCGGGGCGGTTACAACCACACGGTGGTTGGGATAGAAGTCCTGATAGGAGAAGTGATGGTAATTATGAGAGGGATCGGTATAGTGATAGGTCTCGAGAACGGGATAGGTCTCAGGATAGGAGAAAAGATCATCGCTACATAGAGAAGGAAAGAGCTTATGAGCATTCACATGATTTTGAGAGGAGGAATGATCATGATATGGTAGATAGAAATGGTTATAAGGAAAGAGTTTTCGATGGTGATGAAGGAGATTGGCGTGGGGATAGGTCTTATGTGGATAATGGTAGGGGAATAAATGGGACCAGTGCTCACGAAGGAAGGAGCCAAGAAACAAAGAGAGAAGATAGTACCATTCTTGATGGTGGACGTGGCAGAGATCACTTCTCTAATTCAAGTGGAGATCATCAGGTGAAAGAAGATCTGGAAGCGCTGATTAAGATGCGTGAGGCGCTTCGAGATGAGGTGATGGTGATGGAAGAGAGACTGGAAGTAAAAGAAGTAGTGTGCTCAGAGCTACAGAAGAAATCTAAGAGATTAGAAGATTTGTTGATCAATGAAAAGAAACTGGTTTCACAACGCCGAAAAGAATTGGCAAAGCTACATAAATCATATTCAAGGGTTAGAGAGTGCACGGACAACCTGAAAGACTGTGAACAAGAACTCCAGTTGCTTGTTAATTCAGCAGCTAGAGAAGGCGTGGCAGGTGCTGATGAAGGATTGGGACACGGGTATCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001655 GO:0001822 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006928 GO:0006950 GO:0007275 GO:0007369 GO:0007399 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009790 GO:0009792 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016477 GO:0019219 GO:0019222 GO:0019899 GO:0022008 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0034248 GO:0034250 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044464 GO:0045727 GO:0045934 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048598 GO:0048731 GO:0048793 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051674 GO:0060211 GO:0060212 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0072001 GO:0080090 GO:0097159 GO:1900151 GO:1900152 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

337

Amino Acids

38.68

Weight (kDa)

6.26

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19960 AT5G19960
fragaria_vesca	FvH4_1g04100 FvH4_1g04120 FvH4_1g04120
malus_domestica	MD02G1039700.v1.1 MD15G1180600.v1.1
prunus_persica	Prupe.7G236000_v2.0.a1 Prupe.7G236000_v2.0.a1
pyrus_communis	pycom02g03300 pycom15g16200
rosa_chinensis	RchiOBHm_Chr2g0089591
rosa_laevigata	RLG00000016042
rosa_multiflora	Rmu_sc0004662.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151730
rosa_rugosa	Rorug02G0001800 Rorug02G0001800
rosa_samantha	Rh2AG047100 Rh2BG045900 Rh2CG047800 Rh2DG047300
rosa_wichuraiana	Rw2G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AarI	CACCTGC	1 cut(s)	968
Acc36I	ACCTGC	1 cut(s)	968
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	36, 283
AclWI	GGATC	1 cut(s)	357
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	625
AfeI	AGCGCT	1 cut(s)	705
AfiI	CCNNNNNNNGG	3 cut(s)	175, 278, 299
AgsI	TTSAA	2 cut(s)	669, 891
AjiI	CACGTC	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	271
AloI	GAACNNNNNNTCC	2 cut(s)	921, 953
AluBI	AGCT	4 cut(s)	431, 790, 874, 962
AluI	AGCT	4 cut(s)	431, 790, 874, 962
Alw21I	GWGCWC	3 cut(s)	586, 785, 908
Alw26I	GTCTC	3 cut(s)	372, 390, 751
Alw44I	GTGCAC	1 cut(s)	904
AlwI	GGATC	1 cut(s)	357
AlwNI	CAGNNNCTG	1 cut(s)	983
Ama87I	CYCGRG	1 cut(s)	369
Aor51HI	AGCGCT	1 cut(s)	705
AoxI	GGCC	1 cut(s)	37
ApaLI	GTGCAC	1 cut(s)	904
ApeKI	GCWGC	1 cut(s)	959
AspLEI	GCGC	2 cut(s)	706, 727
AspS9I	GGNCC	2 cut(s)	275, 576
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	6 cut(s)	46, 94, 527, 697, 751, 757
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	2 cut(s)	275, 576
BaeGI	GKGCMC	1 cut(s)	908
BaeI	ACNNNNGTAYC	1 cut(s)	989
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	3 cut(s)	586, 785, 908
BbvI	GCAGC	1 cut(s)	971
BccI	CCATC	7 cut(s)	8, 197, 326, 506, 629, 736, 742
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	273
BclI	TGATCA	2 cut(s)	466, 825
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	3 cut(s)	372, 390, 751
BfaI	CTAG	1 cut(s)	963
BfmI	CTRYAG	1 cut(s)	791
BfoI	RGCGCY	2 cut(s)	707, 728
BfuAI	ACCTGC	1 cut(s)	968
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	2 cut(s)	37, 960
BlsI	GCNGC	2 cut(s)	38, 961
Bme1390I	CCNGG	2 cut(s)	273, 279
Bme18I	GGWCC	2 cut(s)	275, 576
BmeT110I	CYCGRG	1 cut(s)	369
BmgBI	CACGTC	1 cut(s)	644
BmgT120I	GGNCC	2 cut(s)	275, 576
BmiI	GGNNCC	3 cut(s)	94, 577, 599
BmrFI	CCNGG	2 cut(s)	273, 279
BmsI	GCATC	2 cut(s)	175, 705
BpiI	GAAGAC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	923
Bpu14I	TTCGAA	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	279
BsaI	GGTCTC	2 cut(s)	372, 390
BsaJI	CCNNGG	2 cut(s)	57, 278
BsaWI	WCCGGW	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 278, 299
Bse1I	ACTGG	4 cut(s)	579, 765, 846, 940
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	57, 278
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	3 cut(s)	175, 278, 299
BseMII	CTCAG	2 cut(s)	401, 798
BseNI	ACTGG	4 cut(s)	579, 765, 846, 940
BseRI	GAGGAG	2 cut(s)	74, 472
BseSI	GKGCMC	1 cut(s)	908
BseXI	GCAGC	1 cut(s)	971
BsgI	GTGCAG	1 cut(s)	246
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	176
BsiHKAI	GWGCWC	3 cut(s)	586, 785, 908
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	124, 278
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	3 cut(s)	175, 278, 299
BsmAI	GTCTC	3 cut(s)	372, 390, 751
BsmFI	GGGAC	1 cut(s)	589
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	39
Bso31I	GGTCTC	2 cut(s)	372, 390
BsoBI	CYCGRG	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	586, 785, 908
Bsp143I	GATC	8 cut(s)	173, 349, 403, 466, 652, 676, 694, 825
BspACI	CCGC	2 cut(s)	36, 283
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	400, 797
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	3 cut(s)	94, 577, 599
BspMI	ACCTGC	1 cut(s)	968
BspPI	GGATC	1 cut(s)	357
BspT104I	TTCGAA	1 cut(s)	164
BspTNI	GGTCTC	2 cut(s)	372, 390
BsrI	ACTGG	4 cut(s)	579, 765, 846, 940
BssECI	CCNNGG	2 cut(s)	57, 278
BssMI	GATC	8 cut(s)	173, 349, 403, 466, 652, 676, 694, 825
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	4 cut(s)	106, 170, 299, 926
Bst6I	CTCTTC	1 cut(s)	747
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	387, 784, 804
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	2 cut(s)	707, 728
BstHHI	GCGC	2 cut(s)	706, 727
BstKTI	GATC	8 cut(s)	176, 352, 406, 469, 655, 679, 697, 828
BstMAI	GTCTC	3 cut(s)	372, 390, 751
BstMBI	GATC	8 cut(s)	173, 349, 403, 466, 652, 676, 694, 825
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 229, 724
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	271, 277
BstSFI	CTRYAG	1 cut(s)	791
BstSLI	GKGCMC	1 cut(s)	908
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	971
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	392
BtrI	CACGTC	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	234, 586
BveI	ACCTGC	1 cut(s)	968
Cac8I	GCNNGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	983
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	2 cut(s)	706, 727
Cfr13I	GGNCC	2 cut(s)	275, 576
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	624
CviAII	CATG	2 cut(s)	446, 470
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	3 cut(s)	387, 784, 804
DpnI	GATC	8 cut(s)	175, 351, 405, 468, 654, 678, 696, 827
DpnII	GATC	8 cut(s)	173, 349, 403, 466, 652, 676, 694, 825
DraIII	CACNNNGTG	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	747
Eco31I	GGTCTC	2 cut(s)	372, 390
Eco47I	GGWCC	2 cut(s)	275, 576
Eco47III	AGCGCT	1 cut(s)	705
Eco88I	CYCGRG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	449, 473
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	2 cut(s)	445, 469
FbaI	TGATCA	2 cut(s)	466, 825
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	37, 960
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	37, 960
FspBI	CTAG	1 cut(s)	963
GlaI	GCGC	2 cut(s)	705, 726
GluI	GCNGC	2 cut(s)	37, 960
GsuI	CTGGAG	1 cut(s)	923
HaeII	RGCGCY	2 cut(s)	707, 728
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	2 cut(s)	124, 278
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	2 cut(s)	706, 727
Hin1II	CATG	2 cut(s)	449, 473
Hin6I	GCGC	2 cut(s)	704, 725
HinP1I	GCGC	2 cut(s)	704, 725
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	2 cut(s)	124, 278
HphI	GGTGA	6 cut(s)	46, 94, 527, 697, 751, 757
Hpy166II	GTNNAC	4 cut(s)	28, 641, 906, 929
Hpy188I	TCNGA	1 cut(s)	787
Hpy188III	TCNNGA	9 cut(s)	317, 369, 371, 389, 470, 587, 632, 698, 731
Hpy8I	GTNNAC	4 cut(s)	28, 641, 906, 929
Hpy99I	CGWCG	3 cut(s)	35, 75, 174
HpyAV	CCTTC	6 cut(s)	415, 515, 584, 588, 962, 983
HpyCH4III	ACNGT	4 cut(s)	106, 170, 299, 926
HpyCH4IV	ACGT	2 cut(s)	30, 643
HpyCH4V	TGCA	2 cut(s)	227, 906
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 229, 724
HpyF3I	CTNAG	3 cut(s)	387, 784, 804
HpySE526I	ACGT	2 cut(s)	30, 643
Hsp92II	CATG	2 cut(s)	449, 473
HspAI	GCGC	2 cut(s)	704, 725
Ksp22I	TGATCA	2 cut(s)	466, 825
Kzo9I	GATC	8 cut(s)	173, 349, 403, 466, 652, 676, 694, 825
LmnI	GCTCC	2 cut(s)	98, 597
Lsp1109I	GCAGC	1 cut(s)	971
LweI	GCATC	2 cut(s)	175, 705
MaeI	CTAG	1 cut(s)	963
MaeII	ACGT	2 cut(s)	30, 643
MaeIII	GTNAC	4 cut(s)	17, 154, 244, 285
MalI	GATC	8 cut(s)	175, 351, 405, 468, 654, 678, 696, 827
MboI	GATC	8 cut(s)	173, 349, 403, 466, 652, 676, 694, 825
MboII	GAAGA	8 cut(s)	70, 206, 273, 629, 704, 764, 808, 827
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	3 cut(s)	586, 785, 908
MluCI	AATT	4 cut(s)	337, 664, 863, 952
MseI	TTAA	3 cut(s)	108, 711, 951
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	2 cut(s)	124, 278
MspR9I	CCNGG	2 cut(s)	273, 279
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	185, 229, 724
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	8 cut(s)	173, 349, 403, 466, 652, 676, 694, 825
NlaIII	CATG	2 cut(s)	449, 473
NlaIV	GGNNCC	3 cut(s)	94, 577, 599
NmuCI	GTSAC	1 cut(s)	244
NspV	TTCGAA	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	369
PagI	TCATGA	1 cut(s)	469
PaqCI	CACCTGC	1 cut(s)	968
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	268
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	38, 961
Ple19I	CGATCG	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	3 cut(s)	94, 577, 599
PspPI	GGNCC	2 cut(s)	275, 576
PstNI	CAGNNNCTG	1 cut(s)	983
PsuI	RGATCY	1 cut(s)	694
PvuI	CGATCG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	108, 711, 951
SatI	GCNGC	2 cut(s)	37, 960
Sau3AI	GATC	8 cut(s)	173, 349, 403, 466, 652, 676, 694, 825
Sau96I	GGNCC	2 cut(s)	275, 576
ScrFI	CCNGG	2 cut(s)	273, 279
SduI	GDGCHC	3 cut(s)	586, 785, 908
SfaNI	GCATC	2 cut(s)	175, 705
SfcI	CTRYAG	1 cut(s)	791
Sfr274I	CTCGAG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	2 cut(s)	275, 576
SlaI	CTCGAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	4 cut(s)	337, 664, 863, 952
SsiI	CCGC	2 cut(s)	36, 283
SspMI	CTAG	1 cut(s)	963
StyD4I	CCNGG	2 cut(s)	271, 277
TaaI	ACNGT	4 cut(s)	106, 170, 299, 926
TaiI	ACGT	2 cut(s)	33, 646
TaqI	TCGA	6 cut(s)	164, 172, 192, 370, 510, 730
TasI	AATT	4 cut(s)	337, 664, 863, 952
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	3 cut(s)	108, 711, 951
Tru9I	TTAA	3 cut(s)	108, 711, 951
TscAI	CASTG	2 cut(s)	234, 586
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	959
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	281, 534, 846, 1002
TspGWI	ACGGA	5 cut(s)	13, 59, 85, 923, 999
TspRI	CASTG	2 cut(s)	234, 586
Van91I	CCANNNNNTGG	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	904
VpaK11BI	GGWCC	2 cut(s)	275, 576
XcmI	CCANNNNNNNNNTGG	1 cut(s)	300
XhoI	CTCGAG	1 cut(s)	369
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.