Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009223

Physical Location & Seq

Genomic Coordinates Reverse (-)

88909738 .. 88912975

Gene Structure 3238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGACGATCGACGACGAGAGCTCCGTCTACGTCGGCGGCCTTCCGTACGACGCCACGGAGGACAGTGTCCGCCAAGTCTTCGATCTGTACGGCGCCGTCGTCGCCGTTAAGATTGTGAATGATAACACGAGCAGAGGAAAATGCTACGGCTTCGTTACTTTTCGGAATCCACGGTCGGCGATCGACGCCATCAACGACATGGACGGCAGGTTTTGGATTTGGATTTGGATTTTGGAGCAGACTGTGGATGGGAGAGTTGTGAGAGTGAATGAGCATGAGATGGAGTATGATGATGTTAGGGAGAGGTATAGTGATAGGTCTATGGAGCATGGGGATAGGTACATTGTTCGGTCAAGGGAGCGGCGGTCTGTTGAGTATGAGGGGGAAATAGATGGGGGATACGATCGTGTGCATGGTGATCATGAGGTAATGAGTGAGCATTTCTCGGATAGAGAACGTGTGAGGGACAGGGATTTGGAAGATATTGAGCAAGGACACAGCAGGAGCCACGAGCGGGGTTGGGGGAGAAGAAATCGTACTGTGGAATCTGATAGAGAGAGGGAGGTGGACAGAACGGAGCTTCCGAATGATATTGTTGAGAAGGATAGAGATCAACAGTCAAGGAGGTGGAACGGTTCAAATTCTGTTGACCGAAATAGTAGGGAGCTTTTATCCCATTCAAGTGATGATTTCAATGATCAGGCAAGTACAGCATTTTTAGCATTTCTTGCTGCGGGAGTGTCATGCTTTGCTTTTGTAAAAGAACAGCTTGAAAGATCCACACTGAGGCTTGAAGAATTGAAAAAGGAGACTTCTGAGATGGAAGAGAAGTTGGAAGATGAAGGAAAACTGGTTTTGGATTTACAGAATCAATCTAAGTTTTACTCCAAGTCTTTATTTCACATGCTAAACTTGGTTCTGGTCTCACTGAGACAGAAGCTGGAGGATGCATTGGCAAATGCAAAGAAGAACACTTCACACCAGAAGATGCAGTTGACCAAGCTACATGATTGCTTTATGCAAGTAAAAGATTACAGAGAAAGACTTAAAAGAAGTGAAGATGAACTTCAGATGCTGGTTGAAGCAGCAACAGGGGAAGATGGCATTGATGATGTTGGCTTGAGGGATAAAATCCTGACTATTGGCAATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

384

Amino Acids

44.76

Weight (kDa)

5.03

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 70	1.1e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19960 AT5G19960
fragaria_vesca	FvH4_1g04100 FvH4_1g04120 FvH4_1g04120
malus_domestica	MD02G1039700.v1.1 MD15G1180600.v1.1
prunus_persica	Prupe.7G236000_v2.0.a1 Prupe.7G236000_v2.0.a1
pyrus_communis	pycom02g03300 pycom15g16200
rosa_chinensis	RchiOBHm_Chr2g0089591
rosa_laevigata	RLG00000016042
rosa_multiflora	Rmu_sc0004662.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151730
rosa_rugosa	Rorug02G0001800 Rorug02G0001800
rosa_samantha	Rh2AG047100 Rh2BG045900 Rh2CG047800 Rh2DG047300
rosa_wichuraiana	Rw2G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	92
AccBSI	CCGCTC	2 cut(s)	361, 514
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	6 cut(s)	36, 70, 361, 364, 514, 734
AclWI	GGATC	1 cut(s)	771
AcsI	RAATTY	1 cut(s)	640
AcuI	CTGAAG	1 cut(s)	1052
AcyI	GRCGYC	3 cut(s)	51, 93, 186
AfaI	GTAC	5 cut(s)	47, 89, 341, 538, 709
AfiI	CCNNNNNNNGG	2 cut(s)	514, 786
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	7 cut(s)	639, 681, 694, 773, 794, 802, 1082
AloI	GAACNNNNNNTCC	2 cut(s)	565, 597
AluBI	AGCT	6 cut(s)	21, 580, 667, 769, 940, 1003
AluI	AGCT	6 cut(s)	21, 580, 667, 769, 940, 1003
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	3 cut(s)	803, 925, 928
AlwI	GGATC	1 cut(s)	771
AlwNI	CAGNNNCTG	2 cut(s)	940, 1075
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	731, 1085
ApoI	RAATTY	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	428
BaeI	ACNNNNGTAYC	2 cut(s)	391, 424
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	23
BarI	GAAGNNNNNNTAC	2 cut(s)	520, 552
BauI	CACGAG	2 cut(s)	127, 509
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	718, 1097
BccI	CCATC	6 cut(s)	197, 242, 274, 386, 814, 1094
BceAI	ACGGC	5 cut(s)	80, 89, 106, 163, 220
BciVI	GTATCC	1 cut(s)	392
BclI	TGATCA	2 cut(s)	418, 697
BcoDI	GTCTC	3 cut(s)	803, 925, 928
BfoI	RGCGCY	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	392
BisI	GCNGC	4 cut(s)	37, 362, 732, 1086
BlsI	GCNGC	4 cut(s)	38, 363, 733, 1087
BmiI	GGNNCC	2 cut(s)	94, 506
BmsI	GCATC	3 cut(s)	937, 978, 1062
BpiI	GAAGAC	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
BpmI	CTGGAG	1 cut(s)	962
BpuEI	CTTGAG	1 cut(s)	1141
BsaBI	GATNNNNATC	1 cut(s)	609
BsaHI	GRCGYC	3 cut(s)	51, 93, 186
BsaI	GGTCTC	1 cut(s)	928
BsaJI	CCNNGG	2 cut(s)	54, 170
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 350, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	514, 786
Bse1I	ACTGG	1 cut(s)	855
Bse3DI	GCAATG	1 cut(s)	1153
Bse8I	GATNNNNATC	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	54, 170
BseGI	GGATG	2 cut(s)	253, 952
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	2 cut(s)	514, 786
BseMI	GCAATG	1 cut(s)	1153
BseMII	CTCAG	3 cut(s)	776, 807, 920
BseNI	ACTGG	1 cut(s)	855
BseXI	GCAGC	2 cut(s)	718, 1097
Bsh1285I	CGRYCG	4 cut(s)	9, 176, 183, 406
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	92
BsiEI	CGRYCG	4 cut(s)	9, 176, 183, 406
BsiHKAI	GWGCWC	1 cut(s)	23
BsiWI	CGTACG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	514, 786
BsmAI	GTCTC	3 cut(s)	803, 925, 928
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	39
Bso31I	GGTCTC	1 cut(s)	928
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	8 cut(s)	6, 82, 180, 403, 418, 610, 697, 776
BspACI	CCGC	6 cut(s)	36, 70, 361, 364, 514, 734
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	3 cut(s)	777, 808, 921
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	94, 506
BspMI	ACCTGC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	771
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	928
BsrBI	CCGCTC	2 cut(s)	361, 514
BsrDI	GCAATG	1 cut(s)	1153
BsrI	ACTGG	1 cut(s)	855
BssECI	CCNNGG	2 cut(s)	54, 170
BssMI	GATC	8 cut(s)	6, 82, 180, 403, 418, 610, 697, 776
BssNI	GRCGYC	3 cut(s)	51, 93, 186
BssSI	CACGAG	2 cut(s)	127, 509
Bst2BI	CACGAG	2 cut(s)	127, 509
Bst4CI	ACNGT	6 cut(s)	65, 174, 244, 541, 618, 635
Bst6I	CTCTTC	1 cut(s)	819
BstACI	GRCGYC	3 cut(s)	51, 93, 186
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstDEI	CTNAG	4 cut(s)	785, 816, 876, 929
BstDSI	CCRYGG	2 cut(s)	54, 170
BstF5I	GGATG	2 cut(s)	253, 952
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	8 cut(s)	9, 85, 183, 406, 421, 613, 700, 779
BstMAI	GTCTC	3 cut(s)	803, 925, 928
BstMBI	GATC	8 cut(s)	6, 82, 180, 403, 418, 610, 697, 776
BstMCI	CGRYCG	4 cut(s)	9, 176, 183, 406
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 185, 710, 719, 728
BstNSI	RCATGY	1 cut(s)	907
BstV1I	GCAGC	2 cut(s)	718, 1097
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	776
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	2 cut(s)	54, 170
BtsCI	GGATG	2 cut(s)	253, 952
BtsIMutI	CAGTG	3 cut(s)	70, 782, 926
BveI	ACCTGC	1 cut(s)	198
CaiI	CAGNNNCTG	2 cut(s)	940, 1075
CciI	TCATGA	1 cut(s)	421
CfoI	GCGC	1 cut(s)	95
CseI	GACGC	2 cut(s)	59, 194
Csp6I	GTAC	5 cut(s)	46, 88, 340, 537, 708
CviAII	CATG	8 cut(s)	199, 275, 329, 413, 422, 744, 904, 1007
CviQI	GTAC	5 cut(s)	46, 88, 340, 537, 708
DdeI	CTNAG	4 cut(s)	785, 816, 876, 929
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	8 cut(s)	8, 84, 182, 405, 420, 612, 699, 778
DpnII	GATC	8 cut(s)	6, 82, 180, 403, 418, 610, 697, 776
Eam1104I	CTCTTC	1 cut(s)	819
EarI	CTCTTC	1 cut(s)	819
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	928
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	1052
EcoICRI	GAGCTC	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	952
EcoT38I	GRGCYC	1 cut(s)	23
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
FaeI	CATG	8 cut(s)	202, 278, 332, 416, 425, 747, 907, 1010
FalI	AAGNNNNNCTT	4 cut(s)	753, 785, 1050, 1082
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	8 cut(s)	198, 274, 328, 412, 421, 743, 903, 1006
FauI	CCCGC	2 cut(s)	507, 727
FbaI	TGATCA	2 cut(s)	418, 697
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	37, 362, 732, 1086
FokI	GGATG	2 cut(s)	260, 959
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	4 cut(s)	37, 362, 732, 1086
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	4 cut(s)	37, 362, 732, 1086
GsuI	CTGGAG	1 cut(s)	962
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	39
HgaI	GACGC	2 cut(s)	59, 194
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	3 cut(s)	51, 93, 186
Hin1II	CATG	8 cut(s)	202, 278, 332, 416, 425, 747, 907, 1010
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	2 cut(s)	649, 996
HindII	GTYRAC	2 cut(s)	649, 996
HinfI	GANTC	3 cut(s)	166, 545, 868
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	4 cut(s)	28, 568, 649, 996
Hpy188I	TCNGA	6 cut(s)	165, 448, 550, 585, 817, 1071
Hpy188III	TCNNGA	2 cut(s)	422, 1135
Hpy8I	GTNNAC	4 cut(s)	28, 568, 649, 996
Hpy99I	CGWCG	7 cut(s)	14, 17, 35, 53, 101, 104, 188
HpyAV	CCTTC	3 cut(s)	50, 595, 836
HpyCH4III	ACNGT	6 cut(s)	65, 174, 244, 541, 618, 635
HpyCH4IV	ACGT	2 cut(s)	30, 457
HpyCH4V	TGCA	5 cut(s)	412, 950, 962, 991, 1021
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 185, 710, 719, 728
HpyF3I	CTNAG	4 cut(s)	785, 816, 876, 929
HpySE526I	ACGT	2 cut(s)	30, 457
Hsp92I	GRCGYC	3 cut(s)	51, 93, 186
Hsp92II	CATG	8 cut(s)	202, 278, 332, 416, 425, 747, 907, 1010
HspAI	GCGC	1 cut(s)	93
KasI	GGCGCC	1 cut(s)	92
Ksp22I	TGATCA	2 cut(s)	418, 697
Kzo9I	GATC	8 cut(s)	6, 82, 180, 403, 418, 610, 697, 776
LmnI	GCTCC	7 cut(s)	26, 235, 325, 358, 504, 577, 664
Lsp1109I	GCAGC	2 cut(s)	718, 1097
LweI	GCATC	3 cut(s)	937, 978, 1062
MaeII	ACGT	2 cut(s)	30, 457
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	8 cut(s)	8, 84, 182, 405, 420, 612, 699, 778
MbiI	CCGCTC	2 cut(s)	361, 514
MboI	GATC	8 cut(s)	6, 82, 180, 403, 418, 610, 697, 776
MflI	RGATCY	1 cut(s)	776
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	2 cut(s)	640, 797
Mly113I	GGCGCC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	813
Mph1103I	ATGCAT	1 cut(s)	952
MseI	TTAA	2 cut(s)	108, 1047
MslI	CAYNNNNRTG	1 cut(s)	681
MwoI	GCNNNNNNNGC	5 cut(s)	101, 185, 710, 719, 728
NarI	GGCGCC	1 cut(s)	93
NdeII	GATC	8 cut(s)	6, 82, 180, 403, 418, 610, 697, 776
NlaIII	CATG	8 cut(s)	202, 278, 332, 416, 425, 747, 907, 1010
NlaIV	GGNNCC	2 cut(s)	94, 506
NsiI	ATGCAT	1 cut(s)	952
NspI	RCATGY	1 cut(s)	907
PagI	TCATGA	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	4 cut(s)	21, 96, 192, 581
PfeI	GAWTC	3 cut(s)	166, 545, 868
Pfl23II	CGTACG	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	4 cut(s)	38, 363, 733, 1087
Ple19I	CGATCG	3 cut(s)	9, 183, 406
PluTI	GGCGCC	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	23
PspLI	CGTACG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	94, 506
PstNI	CAGNNNCTG	2 cut(s)	940, 1075
PsuI	RGATCY	1 cut(s)	776
PsyI	GACNNNGTC	1 cut(s)	65
PvuI	CGATCG	3 cut(s)	9, 183, 406
RsaI	GTAC	5 cut(s)	47, 89, 341, 538, 709
RsaNI	GTAC	5 cut(s)	46, 88, 340, 537, 708
RseI	CAYNNNNRTG	1 cut(s)	681
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	108, 1047
SatI	GCNGC	4 cut(s)	37, 362, 732, 1086
Sau3AI	GATC	8 cut(s)	6, 82, 180, 403, 418, 610, 697, 776
SduI	GDGCHC	1 cut(s)	23
SfaNI	GCATC	3 cut(s)	937, 978, 1062
SfoI	GGCGCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	1120
SmoI	CTYRAG	1 cut(s)	1120
Sse9I	AATT	2 cut(s)	640, 797
SsiI	CCGC	6 cut(s)	36, 70, 361, 364, 514, 734
SspDI	GGCGCC	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	23
TaaI	ACNGT	6 cut(s)	65, 174, 244, 541, 618, 635
TaiI	ACGT	2 cut(s)	33, 460
TaqI	TCGA	3 cut(s)	9, 81, 183
TaqII	GACCGA	2 cut(s)	339, 666
TasI	AATT	2 cut(s)	640, 797
TatI	WGTACW	1 cut(s)	707
TauI	GCSGC	2 cut(s)	39, 364
TfiI	GAWTC	3 cut(s)	166, 545, 868
Tru1I	TTAA	2 cut(s)	108, 1047
Tru9I	TTAA	2 cut(s)	108, 1047
TscAI	CASTG	3 cut(s)	70, 789, 933
TseI	GCWGC	2 cut(s)	731, 1085
TspDTI	ATGAA	2 cut(s)	855, 1077
TspGWI	ACGGA	4 cut(s)	13, 33, 71, 590
TspRI	CASTG	3 cut(s)	70, 789, 933
Tth111I	GACNNNGTC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	640
XceI	RCATGY	1 cut(s)	907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.