Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009223

Physical Location & Seq

Genomic Coordinates Forward (+)

2171924 .. 2174413

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03300.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGACGATAGACGACGAGAGCTCCGTCTACGTCGGTGGCCTTCCGTACGACGCCACCGAGGAAACCGTCCGCAGAGTCTTCGAGCTGTACGGAAACGTCATTGCGGTTAAGATTATCAACGACGCTTCGACGCGCGGAAAATGCTATGGCTTTGTCACTTTCAGGAATCCCCGGTCAGCGATTCTCGCCATCAATGAGATGGATGGGAGGACTGTTGATGGAAGAGTGATCAGAGTAAATGAAGTGAGGAGTAGAGGTAGAAGATTGAGTTTTGGAAGAGAGAGGGAGAGTTTCCGGTGGAATGCTGAGAGGGGGAGGAATTGGGATAGGGGTAGATACCATGAGAGGGATTTTGATCGGGAGAGTGACCGGTATAAGGATAGATACAGTGATCGGTCGAGAGAGCATGACCGTGACAGGTCTCTTGAGGATGATGGTGAAGAGAGGGACAGACGGTATGAGAGGGGACACGATTATGATCATGTAAGGAACCATTTTTTGGATAGAGATCATGATCAGGACAGGGATGTGGAAGATAACCAGCAAGGACAGAGCAGGAACCGCGATCAGGGTTGGGAACGAGATGGAGCTTTGGAGTCTGAACGAGATAGGGAGATGGACAAAACCAAAAGCCATGATAGTATCAGTGACAAGGATAGGGATGACCAGTCAAGGAGATGGAACGGTTCAAGTACTGTTGACCGACAAAGTCGGGACCTCATATCTCATCCAAGTGATGATTACAATGTTCAGGTAAAAGAACAGCTTGAGAGATCCATGCAAAGGTTTGAAGAAATAAAAAATGAGACTATTCAGATGGAGGAGAGCTTAGAGGAGAAAGAGAAACTTGTTTTGGATTTACAGAAGAAATCTAAGAAATTGGAGGATGCCTTGATAAATGCAAAGAAGAACTCTTCACACCAGAAGTTGAAGCTAACCAAGCTACATAAATCCTTTATGCAAGTAAAAGATTACACTGAAAGACTTAAAATCTGTGAACACGAACTTCAGTCGCTCGTTGATACAGAATTATTGGAACATGATAGTGATGATGTTGGCTTAGGGGATGAAATCTTGACAATTGGTGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

365

Amino Acids

43.21

Weight (kDa)

5.36

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19960 AT5G19960
fragaria_vesca	FvH4_1g04100 FvH4_1g04120 FvH4_1g04120
malus_domestica	MD02G1039700.v1.1 MD15G1180600.v1.1
prunus_persica	Prupe.7G236000_v2.0.a1 Prupe.7G236000_v2.0.a1
pyrus_communis	pycom02g03300 pycom15g16200
rosa_chinensis	RchiOBHm_Chr2g0089591
rosa_laevigata	RLG00000016042
rosa_multiflora	Rmu_sc0004662.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151730
rosa_rugosa	Rorug02G0001800 Rorug02G0001800
rosa_samantha	Rh2AG047100 Rh2BG045900 Rh2CG047800 Rh2DG047300
rosa_wichuraiana	Rw2G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	3 cut(s)	133, 135, 564
AciI	CCGC	4 cut(s)	70, 104, 135, 562
AclWI	GGATC	1 cut(s)	768
AcuI	CTGAAG	1 cut(s)	992
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	3 cut(s)	47, 89, 694
AfiI	CCNNNNNNNGG	5 cut(s)	346, 376, 499, 568, 783
AgeI	ACCGGT	1 cut(s)	369
AgsI	TTSAA	3 cut(s)	690, 791, 931
AjuI	GAANNNNNNNTTGG	4 cut(s)	482, 514, 836, 868
AluBI	AGCT	7 cut(s)	21, 85, 590, 766, 828, 934, 943
AluI	AGCT	7 cut(s)	21, 85, 590, 766, 828, 934, 943
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	2 cut(s)	426, 800
AlwI	GGATC	1 cut(s)	768
AoxI	GGCC	1 cut(s)	37
AsiGI	ACCGGT	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	715
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	23
BccI	CCATC	9 cut(s)	193, 197, 197, 212, 428, 578, 610, 672, 811
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BclI	TGATCA	3 cut(s)	228, 478, 514
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	426, 800
BmcAI	AGTACT	1 cut(s)	694
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	3 cut(s)	491, 560, 716
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	2 cut(s)	877, 1078
BpiI	GAAGAC	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	1060
BpuEI	CTTGAG	2 cut(s)	446, 788
BpuMI	CCSGG	1 cut(s)	172
BsaBI	GATNNNNATC	4 cut(s)	354, 477, 507, 513
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	57, 170
BsaWI	WCCGGW	2 cut(s)	294, 369
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 241, 271
Bsc4I	CCNNNNNNNGG	5 cut(s)	346, 376, 499, 568, 783
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	667
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	4 cut(s)	354, 477, 507, 513
BseDI	CCNNGG	2 cut(s)	57, 170
BseGI	GGATG	7 cut(s)	208, 436, 532, 667, 727, 892, 1072
BseJI	GATNNNNATC	4 cut(s)	354, 477, 507, 513
BseLI	CCNNNNNNNGG	5 cut(s)	346, 376, 499, 568, 783
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	667
BseRI	GAGGAG	3 cut(s)	262, 836, 848
Bsh1236I	CGCG	3 cut(s)	133, 135, 564
Bsh1285I	CGRYCG	1 cut(s)	398
BshFI	GGCC	1 cut(s)	39
BshTI	ACCGGT	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	172, 295, 370
BsiWI	CGTACG	1 cut(s)	45
BslFI	GGGAC	3 cut(s)	461, 480, 728
BslI	CCNNNNNNNGG	5 cut(s)	346, 376, 499, 568, 783
BsmAI	GTCTC	2 cut(s)	426, 800
BsmFI	GGGAC	3 cut(s)	461, 480, 728
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	39
Bso31I	GGTCTC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	8 cut(s)	228, 355, 391, 478, 508, 514, 565, 773
BspACI	CCGC	4 cut(s)	70, 104, 135, 562
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	3 cut(s)	133, 135, 564
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	3 cut(s)	491, 560, 716
BspPI	GGATC	1 cut(s)	768
BspTNI	GGTCTC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	667
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	2 cut(s)	57, 170
BssMI	GATC	8 cut(s)	228, 355, 391, 478, 508, 514, 565, 773
BssNI	GRCGYC	1 cut(s)	51
Bst4CI	ACNGT	7 cut(s)	67, 214, 389, 413, 456, 686, 697
Bst6I	CTCTTC	4 cut(s)	217, 271, 435, 919
BstACI	GRCGYC	1 cut(s)	51
BstDEI	CTNAG	4 cut(s)	306, 829, 873, 1060
BstF5I	GGATG	7 cut(s)	208, 436, 532, 667, 727, 892, 1072
BstFNI	CGCG	3 cut(s)	133, 135, 564
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	8 cut(s)	231, 358, 394, 481, 511, 517, 568, 776
BstMAI	GTCTC	2 cut(s)	426, 800
BstMBI	GATC	8 cut(s)	228, 355, 391, 478, 508, 514, 565, 773
BstMCI	CGRYCG	1 cut(s)	398
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 185, 561, 940
BstSCI	CCNGG	1 cut(s)	170
BstUI	CGCG	3 cut(s)	133, 135, 564
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	773
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	7 cut(s)	208, 436, 532, 667, 727, 892, 1072
BtsIMutI	CAGTG	3 cut(s)	394, 652, 975
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	715
CseI	GACGC	3 cut(s)	59, 131, 139
Csp6I	GTAC	3 cut(s)	46, 88, 693
CspAI	ACCGGT	1 cut(s)	369
CviAII	CATG	8 cut(s)	341, 407, 482, 512, 635, 778, 1040, 1092
CviQI	GTAC	3 cut(s)	46, 88, 693
DdeI	CTNAG	4 cut(s)	306, 829, 873, 1060
DpnI	GATC	8 cut(s)	230, 357, 393, 480, 510, 516, 567, 775
DpnII	GATC	8 cut(s)	228, 355, 391, 478, 508, 514, 565, 773
Eam1104I	CTCTTC	4 cut(s)	217, 271, 435, 919
EarI	CTCTTC	4 cut(s)	217, 271, 435, 919
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	715
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	992
EcoICRI	GAGCTC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	715
EcoT22I	ATGCAT	1 cut(s)	1093
EcoT38I	GRGCYC	1 cut(s)	23
FaeI	CATG	8 cut(s)	344, 410, 485, 515, 638, 781, 1043, 1095
FalI	AAGNNNNNCTT	4 cut(s)	750, 782, 831, 863
FaqI	GGGAC	3 cut(s)	461, 480, 728
FatI	CATG	8 cut(s)	340, 406, 481, 511, 634, 777, 1039, 1091
FbaI	TGATCA	3 cut(s)	228, 478, 514
FblI	GTMKAC	1 cut(s)	27
FokI	GGATG	7 cut(s)	215, 443, 539, 674, 714, 899, 1079
FriOI	GRGCYC	1 cut(s)	23
GlaI	GCGC	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	3 cut(s)	172, 295, 370
HgaI	GACGC	3 cut(s)	59, 131, 139
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	8 cut(s)	344, 410, 485, 515, 638, 781, 1043, 1095
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	4 cut(s)	75, 166, 181, 596
HpaII	CCGG	3 cut(s)	172, 295, 370
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	3 cut(s)	28, 700, 998
Hpy188I	TCNGA	3 cut(s)	233, 601, 816
Hpy188III	TCNNGA	8 cut(s)	163, 359, 399, 425, 512, 518, 713, 1075
Hpy8I	GTNNAC	3 cut(s)	28, 700, 998
Hpy99I	CGWCG	5 cut(s)	17, 35, 53, 125, 133
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	7 cut(s)	67, 214, 389, 413, 456, 686, 697
HpyCH4IV	ACGT	2 cut(s)	30, 96
HpyCH4V	TGCA	4 cut(s)	781, 902, 961, 1091
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 185, 561, 940
HpyF3I	CTNAG	4 cut(s)	306, 829, 873, 1060
HpySE526I	ACGT	2 cut(s)	30, 96
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	8 cut(s)	344, 410, 485, 515, 638, 781, 1043, 1095
HspAI	GCGC	1 cut(s)	133
Ksp22I	TGATCA	3 cut(s)	228, 478, 514
Kzo9I	GATC	8 cut(s)	228, 355, 391, 478, 508, 514, 565, 773
LmnI	GCTCC	2 cut(s)	26, 587
LweI	GCATC	2 cut(s)	877, 1078
MaeII	ACGT	2 cut(s)	30, 96
MaeIII	GTNAC	4 cut(s)	154, 365, 413, 647
MalI	GATC	8 cut(s)	230, 357, 393, 480, 510, 516, 567, 775
MboI	GATC	8 cut(s)	228, 355, 391, 478, 508, 514, 565, 773
MfeI	CAATTG	1 cut(s)	1080
MflI	RGATCY	1 cut(s)	773
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	4 cut(s)	319, 878, 1028, 1080
MlyI	GAGTC	2 cut(s)	84, 605
Mph1103I	ATGCAT	1 cut(s)	1093
MseI	TTAA	2 cut(s)	108, 987
MslI	CAYNNNNRTG	4 cut(s)	411, 474, 732, 1044
MspI	CCGG	3 cut(s)	172, 295, 370
MspR9I	CCNGG	1 cut(s)	172
MunI	CAATTG	1 cut(s)	1080
Mva1269I	GAATGC	1 cut(s)	307
MvnI	CGCG	3 cut(s)	133, 135, 564
MwoI	GCNNNNNNNGC	4 cut(s)	141, 185, 561, 940
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	8 cut(s)	228, 355, 391, 478, 508, 514, 565, 773
NlaIII	CATG	8 cut(s)	344, 410, 485, 515, 638, 781, 1043, 1095
NlaIV	GGNNCC	3 cut(s)	491, 560, 716
NmuCI	GTSAC	4 cut(s)	154, 365, 413, 647
NsiI	ATGCAT	1 cut(s)	1093
PagI	TCATGA	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 54
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	166, 181
Pfl23II	CGTACG	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	708
PflMI	CCANNNNNTGG	1 cut(s)	499
PinAI	ACCGGT	1 cut(s)	369
PleI	GAGTC	2 cut(s)	83, 604
PpsI	GAGTC	2 cut(s)	83, 604
PpuMI	RGGWCCY	1 cut(s)	715
Psp124BI	GAGCTC	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	715
PspLI	CGTACG	1 cut(s)	45
PspN4I	GGNNCC	3 cut(s)	491, 560, 716
PspPI	GGNCC	1 cut(s)	715
PspPPI	RGGWCCY	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	773
PsyI	GACNNNGTC	1 cut(s)	708
RsaI	GTAC	3 cut(s)	47, 89, 694
RsaNI	GTAC	3 cut(s)	46, 88, 693
RseI	CAYNNNNRTG	4 cut(s)	411, 474, 732, 1044
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	108, 987
Sau3AI	GATC	8 cut(s)	228, 355, 391, 478, 508, 514, 565, 773
Sau96I	GGNCC	1 cut(s)	715
ScaI	AGTACT	1 cut(s)	694
SchI	GAGTC	2 cut(s)	84, 605
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	23
SfaNI	GCATC	2 cut(s)	877, 1078
SinI	GGWCC	1 cut(s)	715
SmiMI	CAYNNNNRTG	4 cut(s)	411, 474, 732, 1044
SmlI	CTYRAG	2 cut(s)	425, 767
SmoI	CTYRAG	2 cut(s)	425, 767
Sse9I	AATT	4 cut(s)	319, 878, 1028, 1080
SsiI	CCGC	4 cut(s)	70, 104, 135, 562
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	7 cut(s)	67, 214, 389, 413, 456, 686, 697
TaiI	ACGT	2 cut(s)	33, 99
TaqI	TCGA	3 cut(s)	81, 128, 398
TaqII	GACCGA	2 cut(s)	384, 717
TasI	AATT	4 cut(s)	319, 878, 1028, 1080
TatI	WGTACW	1 cut(s)	692
TfiI	GAWTC	2 cut(s)	166, 181
Tru1I	TTAA	2 cut(s)	108, 987
Tru9I	TTAA	2 cut(s)	108, 987
TscAI	CASTG	3 cut(s)	394, 652, 982
TseFI	GTSAC	4 cut(s)	154, 365, 413, 647
Tsp45I	GTSAC	4 cut(s)	154, 365, 413, 647
TspDTI	ATGAA	2 cut(s)	255, 1083
TspGWI	ACGGA	3 cut(s)	13, 33, 105
TspRI	CASTG	3 cut(s)	394, 652, 982
Tth111I	GACNNNGTC	1 cut(s)	708
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	694
Zsp2I	ATGCAT	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.