Rh2BG045900

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009223
Physical Location & Seq
Forward (+)
3260756 .. 3264280
3525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG045900.1

Sequence Viewer

Length: 861 bp
ATGACGATCGACGACGAGAGCTCCGTCTACGTCGGCGGCCTTCCGTACGACGCCACGGAGGACAGTGTCCGCCGAGTCTTCGATCTGTACGGCGCCGTCGTCGCCGTTAAGATTGTGAATGATAATACGAGCAGAGGAAAATGCTACGGCTTCGTTACGTTTCGGAATCCACGGTCGGCGATCGACGCCATCAACGACATGGACGGCAGGACTGTGGATGGGAGAGTTGTGAGAGTGAATGAGGTGAGGACTAGAGGGGGGAGATTAGGTTTTGGGAGAGGGAGAGAGAGGGAGAGTTTCCGACGGGATGTCGAGAGGGGGAGGAACTGGGGGAGGGGTAGGGAGCATGAGATGGAGTATGATGATGTTAGGGAGAGGTATAGTGATAGGTCTATGGAGCGTGGGGATAGGTACATTGTTCGGTCAAGGGAGCGGCGGTCTGTTGAGTATGAGGGGGAAATAGATGGGGGATACGGTCGTGTACATGGTGATCAGGAGGTAATGAGTGAGCATTTCTCGGATAGAGAACGTGTGAGGGACAGGGATTTGGAAGATATTGAGCAAGGACACAGCAGGAGCCATGAGCGGGGTTGGGGGAGAAGAAATCGTACTGTGGAATCTGATAGAGAGAGGGAGATGGACAGAACGGAGCTTCCAAATGATATTGTTGAGAAGGATAGAGATCAACAGTCAAGGAGGTGGAACGGTTCAAATTCTGTTGACCGAAATAGTAGGGAGCTTTTATCCCATTCAAGTGATGATTTCAGTGATCAGGTAAAAGAACAGCTTGAAAGATCCACACTGAGGCTTGAAGAATTGAAAAAAGAGGTTTGTCTTCTCTTGAGAACACTAGTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

286

Amino Acids

33.63

Weight (kDa)

5.73

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 78 4.1e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccBSI CCGCTC 2 cut(s) 433, 586
AccI GTMKAC 1 cut(s) 27
AciI CCGC 5 cut(s) 36, 70, 433, 436, 586
AclWI GGATC 1 cut(s) 789
AcsI RAATTY 1 cut(s) 712
AcyI GRCGYC 3 cut(s) 51, 93, 186
AfaI GTAC 5 cut(s) 47, 89, 413, 483, 610
AfiI CCNNNNNNNGG 2 cut(s) 586, 804
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 5 cut(s) 711, 753, 791, 812, 820
AhdI GACNNNNNGTC 1 cut(s) 308
AhlI ACTAGT 1 cut(s) 850
AloI GAACNNNNNNTCC 2 cut(s) 637, 669
AluBI AGCT 4 cut(s) 21, 652, 739, 787
AluI AGCT 4 cut(s) 21, 652, 739, 787
Alw21I GWGCWC 1 cut(s) 23
AlwI GGATC 1 cut(s) 789
AoxI GGCC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 712
AspLEI GCGC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 256, 500
BaeI ACNNNNGTAYC 2 cut(s) 463, 496
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 592, 624
BbsI GAAGAC 2 cut(s) 70, 827
Bbv12I GWGCWC 1 cut(s) 23
BccI CCATC 5 cut(s) 197, 212, 346, 458, 631
BceAI ACGGC 5 cut(s) 80, 89, 106, 163, 220
BciVI GTATCC 1 cut(s) 464
BclI TGATCA 2 cut(s) 490, 769
BcuI ACTAGT 1 cut(s) 850
BfaI CTAG 2 cut(s) 252, 851
BfoI RGCGCY 1 cut(s) 96
BfuI GTATCC 1 cut(s) 464
BisI GCNGC 2 cut(s) 37, 434
BlsI GCNGC 2 cut(s) 38, 435
BmeRI GACNNNNNGTC 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 94, 578
BmrI ACTGGG 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 337
BpiI GAAGAC 2 cut(s) 70, 827
BplI GAGNNNNNCTC 2 cut(s) 500, 532
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 3 cut(s) 51, 93, 186
BsaJI CCNNGG 2 cut(s) 54, 170
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 253, 283, 422, 452
Bsc4I CCNNNNNNNGG 2 cut(s) 586, 804
Bse1I ACTGG 1 cut(s) 332
Bse8I GATNNNNATC 1 cut(s) 681
BseDI CCNNGG 2 cut(s) 54, 170
BseGI GGATG 2 cut(s) 223, 313
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 2 cut(s) 586, 804
BseMII CTCAG 1 cut(s) 794
BseNI ACTGG 1 cut(s) 332
Bsh1285I CGRYCG 4 cut(s) 9, 176, 183, 478
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 92
BsiEI CGRYCG 4 cut(s) 9, 176, 183, 478
BsiHKAI GWGCWC 1 cut(s) 23
BsiWI CGTACG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 586, 804
BsmFI GGGAC 1 cut(s) 551
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 481
Bsp143I GATC 7 cut(s) 6, 82, 180, 490, 682, 769, 794
BspACI CCGC 5 cut(s) 36, 70, 433, 436, 586
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 795
BspLI GGNNCC 2 cut(s) 94, 578
BspPI GGATC 1 cut(s) 789
BspT107I GGYRCC 1 cut(s) 92
BsrBI CCGCTC 2 cut(s) 433, 586
BsrGI TGTACA 1 cut(s) 481
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 2 cut(s) 54, 170
BssMI GATC 7 cut(s) 6, 82, 180, 490, 682, 769, 794
BssNI GRCGYC 3 cut(s) 51, 93, 186
Bst4CI ACNGT 7 cut(s) 65, 174, 214, 476, 613, 690, 707
BstACI GRCGYC 3 cut(s) 51, 93, 186
BstAUI TGTACA 1 cut(s) 481
BstDEI CTNAG 1 cut(s) 803
BstDSI CCRYGG 2 cut(s) 54, 170
BstF5I GGATG 2 cut(s) 223, 313
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 7 cut(s) 9, 85, 183, 493, 685, 772, 797
BstMBI GATC 7 cut(s) 6, 82, 180, 490, 682, 769, 794
BstMCI CGRYCG 4 cut(s) 9, 176, 183, 478
BstMWI GCNNNNNNNGC 2 cut(s) 101, 185
BstV2I GAAGAC 2 cut(s) 70, 827
BstX2I RGATCY 1 cut(s) 794
BstYI RGATCY 1 cut(s) 794
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 2 cut(s) 54, 170
BtsCI GGATG 2 cut(s) 223, 313
BtsIMutI CAGTG 3 cut(s) 70, 772, 800
CfoI GCGC 1 cut(s) 95
CseI GACGC 2 cut(s) 59, 194
Csp6I GTAC 5 cut(s) 46, 88, 412, 482, 609
CviAII CATG 4 cut(s) 199, 347, 485, 581
CviJI RGCY 8 cut(s) 21, 39, 150, 579, 652, 739, 787, 808
CviKI_1 RGCY 8 cut(s) 21, 39, 150, 579, 652, 739, 787, 808
CviQI GTAC 5 cut(s) 46, 88, 412, 482, 609
DdeI CTNAG 1 cut(s) 803
DinI GGCGCC 1 cut(s) 94
DpnI GATC 7 cut(s) 8, 84, 182, 492, 684, 771, 796
DpnII GATC 7 cut(s) 6, 82, 180, 490, 682, 769, 794
DriI GACNNNNNGTC 1 cut(s) 308
Eam1105I GACNNNNNGTC 1 cut(s) 308
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
FaeI CATG 4 cut(s) 202, 350, 488, 584
FaiI YATR 8 cut(s) 200, 348, 360, 381, 395, 450, 486, 582
FalI AAGNNNNNCTT 2 cut(s) 771, 803
FaqI GGGAC 1 cut(s) 551
FatI CATG 4 cut(s) 198, 346, 484, 580
FauI CCCGC 1 cut(s) 579
FbaI TGATCA 2 cut(s) 490, 769
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 37, 434
FokI GGATG 2 cut(s) 230, 320
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 37, 434
FspBI CTAG 2 cut(s) 252, 851
GlaI GCGC 1 cut(s) 94
GluI GCNGC 2 cut(s) 37, 434
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 39
HgaI GACGC 2 cut(s) 59, 194
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 3 cut(s) 51, 93, 186
Hin1II CATG 4 cut(s) 202, 350, 488, 584
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 3 cut(s) 75, 166, 617
HphI GGTGA 2 cut(s) 256, 500
Hpy166II GTNNAC 3 cut(s) 28, 482, 721
Hpy188I TCNGA 4 cut(s) 165, 302, 520, 622
Hpy188III TCNNGA 3 cut(s) 313, 494, 841
Hpy8I GTNNAC 3 cut(s) 28, 482, 721
Hpy99I CGWCG 8 cut(s) 14, 17, 35, 53, 101, 104, 188, 306
HpyAV CCTTC 2 cut(s) 50, 667
HpyCH4III ACNGT 7 cut(s) 65, 174, 214, 476, 613, 690, 707
HpyCH4IV ACGT 3 cut(s) 30, 158, 529
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 185
HpyF3I CTNAG 1 cut(s) 803
HpySE526I ACGT 3 cut(s) 30, 158, 529
Hsp92I GRCGYC 3 cut(s) 51, 93, 186
Hsp92II CATG 4 cut(s) 202, 350, 488, 584
HspAI GCGC 1 cut(s) 93
KasI GGCGCC 1 cut(s) 92
Ksp22I TGATCA 2 cut(s) 490, 769
Kzo9I GATC 7 cut(s) 6, 82, 180, 490, 682, 769, 794
LmnI GCTCC 7 cut(s) 26, 343, 397, 430, 576, 649, 736
LpnPI CCDG 6 cut(s) 193, 313, 479, 526, 559, 758
MaeI CTAG 2 cut(s) 252, 851
MaeII ACGT 3 cut(s) 30, 158, 529
MaeIII GTNAC 1 cut(s) 154
MalI GATC 7 cut(s) 8, 84, 182, 492, 684, 771, 796
MbiI CCGCTC 2 cut(s) 433, 586
MboI GATC 7 cut(s) 6, 82, 180, 490, 682, 769, 794
MboII GAAGA 5 cut(s) 70, 563, 612, 824, 827
MflI RGATCY 1 cut(s) 794
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 2 cut(s) 712, 815
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 325
MseI TTAA 2 cut(s) 108, 859
MslI CAYNNNNRTG 1 cut(s) 753
MwoI GCNNNNNNNGC 2 cut(s) 101, 185
NarI GGCGCC 1 cut(s) 93
NdeII GATC 7 cut(s) 6, 82, 180, 490, 682, 769, 794
NlaIII CATG 4 cut(s) 202, 350, 488, 584
NlaIV GGNNCC 2 cut(s) 94, 578
NmeAIII GCCGAG 1 cut(s) 98
PcsI WCGNNNNNNNCGW 3 cut(s) 21, 96, 192
PfeI GAWTC 2 cut(s) 166, 617
Pfl23II CGTACG 1 cut(s) 45
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 38, 435
Ple19I CGATCG 2 cut(s) 9, 183
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 23
PspLI CGTACG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 94, 578
PsuI RGATCY 1 cut(s) 794
PsyI GACNNNGTC 1 cut(s) 65
PvuI CGATCG 2 cut(s) 9, 183
RsaI GTAC 5 cut(s) 47, 89, 413, 483, 610
RsaNI GTAC 5 cut(s) 46, 88, 412, 482, 609
RseI CAYNNNNRTG 1 cut(s) 753
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 108, 859
SatI GCNGC 2 cut(s) 37, 434
Sau3AI GATC 7 cut(s) 6, 82, 180, 490, 682, 769, 794
SchI GAGTC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 23
SfoI GGCGCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 841
SmoI CTYRAG 1 cut(s) 841
SpeI ACTAGT 1 cut(s) 850
Sse9I AATT 2 cut(s) 712, 815
SsiI CCGC 5 cut(s) 36, 70, 433, 436, 586
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 2 cut(s) 252, 851
SstI GAGCTC 1 cut(s) 23
TaaI ACNGT 7 cut(s) 65, 174, 214, 476, 613, 690, 707
TaiI ACGT 3 cut(s) 33, 161, 532
TaqI TCGA 4 cut(s) 9, 81, 183, 312
TaqII GACCGA 2 cut(s) 411, 738
TasI AATT 2 cut(s) 712, 815
TatI WGTACW 1 cut(s) 481
TauI GCSGC 2 cut(s) 39, 436
TfiI GAWTC 2 cut(s) 166, 617
Tru1I TTAA 2 cut(s) 108, 859
Tru9I TTAA 2 cut(s) 108, 859
TscAI CASTG 3 cut(s) 70, 772, 807
TspGWI ACGGA 4 cut(s) 13, 33, 71, 662
TspRI CASTG 3 cut(s) 70, 772, 807
Tth111I GACNNNGTC 1 cut(s) 65
XapI RAATTY 1 cut(s) 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 2 cut(s) 252, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.