RchiOBHm_Chr2g0089591

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0009223
Physical Location & Seq
Forward (+)
3755114 .. 3758651
3538 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46489

Sequence Viewer

Length: 1128 bp
ATGACGATCGACGACGAGAGCTCCGTCTACGTCGGCGGCCTTCCGTACGATGCCACGGAGGAAAGTGTCCGCCGAGTCTTCGATCTATACGGCGCCGTCGTCGCCGTTAAGATTGTGAATGATAATACGAGCAGAGGAAAATGCTACGGCTTCGTTACGTTTCGGAATCCACGGTCGGCGATCGACGCCATCAACGACATGGACGGCAGGACTGTGGATGGGAGAGTTGTGAGAGTGAATGAGGTGAGGACTAGAGGGGGGAGATTAGGTTTTGGGAGAGGGAGAGAGAGGGAGAGTTTCCGACGGGATGTCGAGAGGGGGAGGAACTGGGGGAGGGGTAGGGAGCATGAGATGGAGTATGATGATGTTAGGGAGAGGTATAGGGAGAGGTATAGCGATAGGTCTATGGAGCGTGGGGATAGGTACATTGTTCGGTCAAGGGAGCGGCGGTCTGTTGAGTATGAGGGGGAAATAGATGGGGGATACGGTCGTGTACATGGTGATCAGGAGGTAATGAGTGAGCATTTCTCGGATAGAGAACGTGTGAGGGACAGGGATTTGGAAGATATTGAGCAAGGACACAGCAGGAGCCATGAGCGCGGTTGGGGGAGAAGAAATCGTACTGTGGAATCTGATAGAGAGAGGGAGATGGACAGAACGGAGCTTCCGAATGATATTGTTGAAAAGGATAGAGATCAACAGTCAAGGAGGTGGAACGGTTCAAATTCTGTTGATCGAAATAGTAGGGAGCTTTTATCCCATTCAAGTGATGATTTCAATGATCAGGTAAAAGAACAGCTTGAAAGATCCACACTGAGGCTTGAAGAATTGAAAAAGGAGACTTCTGAGATGGAAGAGAAGTTAGAAGATGAAGGAAAACTGGTTTTGGATTTACAGAATCAATCTAAGAAGCTGGAGGATGCATTGGTAAATGCAAAGAAGAACACTTCACACCAGAAGATGCAGTTGACCAAGCTACATGATTGCTTTATGCAAGTAAAAGATTACAGAGAAAGACTTAAAAGAAGTGAAGATGAACTTCAGATGCTGGTTGAAGCTGCAGCAGGGGAAGATGGCATTGATGATGTTGGCTTGAGGGATAAAATCCTGACTATTGGCAATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

375

Amino Acids

43.98

Weight (kDa)

5.43

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 78 5.1e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccBSI CCGCTC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 27
AccII CGCG 1 cut(s) 600
AciI CCGC 5 cut(s) 36, 70, 445, 448, 600
AclWI GGATC 1 cut(s) 801
AcsI RAATTY 1 cut(s) 724
AcuI CTGAAG 1 cut(s) 1025
AcyI GRCGYC 2 cut(s) 93, 186
AfaI GTAC 4 cut(s) 47, 425, 495, 622
AfiI CCNNNNNNNGG 1 cut(s) 816
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 8 cut(s) 683, 723, 765, 778, 803, 824, 832, 1055
AhdI GACNNNNNGTC 1 cut(s) 308
AloI GAACNNNNNNTCC 2 cut(s) 649, 681
AluBI AGCT 7 cut(s) 21, 664, 751, 799, 913, 976, 1058
AluI AGCT 7 cut(s) 21, 664, 751, 799, 913, 976, 1058
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 833
AlwI GGATC 1 cut(s) 801
AlwNI CAGNNNCTG 1 cut(s) 1048
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 1058, 1061
ApoI RAATTY 1 cut(s) 724
AspLEI GCGC 2 cut(s) 95, 600
AsuHPI GGTGA 2 cut(s) 256, 512
BaeI ACNNNNGTAYC 2 cut(s) 475, 508
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 604, 636
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 1045, 1073
BccI CCATC 7 cut(s) 197, 212, 346, 470, 643, 844, 1067
BceAI ACGGC 5 cut(s) 80, 89, 106, 163, 220
BciVI GTATCC 1 cut(s) 476
BclI TGATCA 2 cut(s) 502, 781
BcoDI GTCTC 1 cut(s) 833
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 1059
BfoI RGCGCY 1 cut(s) 96
BfuI GTATCC 1 cut(s) 476
BisI GCNGC 4 cut(s) 37, 446, 1059, 1062
BlsI GCNGC 4 cut(s) 38, 447, 1060, 1063
BmeRI GACNNNNNGTC 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 94, 590
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 4 cut(s) 40, 910, 951, 1035
BmuI ACTGGG 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BpmI CTGGAG 1 cut(s) 935
BpuEI CTTGAG 1 cut(s) 1114
BsaBI GATNNNNATC 1 cut(s) 693
BsaHI GRCGYC 2 cut(s) 93, 186
BsaJI CCNNGG 2 cut(s) 54, 170
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 253, 283, 434, 464
Bsc4I CCNNNNNNNGG 1 cut(s) 816
Bse1I ACTGG 2 cut(s) 332, 885
Bse3DI GCAATG 1 cut(s) 1126
Bse8I GATNNNNATC 1 cut(s) 693
BseDI CCNNGG 2 cut(s) 54, 170
BseGI GGATG 3 cut(s) 223, 313, 925
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 1 cut(s) 816
BseMI GCAATG 1 cut(s) 1126
BseMII CTCAG 2 cut(s) 806, 837
BseNI ACTGG 2 cut(s) 332, 885
BseXI GCAGC 2 cut(s) 1045, 1073
Bsh1236I CGCG 1 cut(s) 600
Bsh1285I CGRYCG 4 cut(s) 9, 176, 183, 490
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 92
BsiEI CGRYCG 4 cut(s) 9, 176, 183, 490
BsiHKAI GWGCWC 1 cut(s) 23
BsiWI CGTACG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 816
BsmAI GTCTC 1 cut(s) 833
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 493
Bsp143I GATC 8 cut(s) 6, 82, 180, 502, 694, 733, 781, 806
BspACI CCGC 5 cut(s) 36, 70, 445, 448, 600
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 807, 838
BspFNI CGCG 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 94, 590
BspMAI CTGCAG 1 cut(s) 1063
BspPI GGATC 1 cut(s) 801
BspT107I GGYRCC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 1126
BsrGI TGTACA 1 cut(s) 493
BsrI ACTGG 2 cut(s) 332, 885
BssECI CCNNGG 2 cut(s) 54, 170
BssMI GATC 8 cut(s) 6, 82, 180, 502, 694, 733, 781, 806
BssNI GRCGYC 2 cut(s) 93, 186
Bst4CI ACNGT 6 cut(s) 174, 214, 488, 625, 702, 719
Bst6I CTCTTC 1 cut(s) 849
BstACI GRCGYC 2 cut(s) 93, 186
BstAUI TGTACA 1 cut(s) 493
BstDEI CTNAG 3 cut(s) 815, 846, 906
BstDSI CCRYGG 2 cut(s) 54, 170
BstF5I GGATG 3 cut(s) 223, 313, 925
BstFNI CGCG 1 cut(s) 600
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 600
BstKTI GATC 8 cut(s) 9, 85, 183, 505, 697, 736, 784, 809
BstMAI GTCTC 1 cut(s) 833
BstMBI GATC 8 cut(s) 6, 82, 180, 502, 694, 733, 781, 806
BstMCI CGRYCG 4 cut(s) 9, 176, 183, 490
BstMWI GCNNNNNNNGC 3 cut(s) 101, 185, 597
BstSFI CTRYAG 1 cut(s) 1059
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 2 cut(s) 1045, 1073
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 806
BstYI RGATCY 1 cut(s) 806
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 2 cut(s) 54, 170
BtsCI GGATG 3 cut(s) 223, 313, 925
BtsIMutI CAGTG 1 cut(s) 812
CaiI CAGNNNCTG 1 cut(s) 1048
CfoI GCGC 2 cut(s) 95, 600
CseI GACGC 1 cut(s) 194
Csp6I GTAC 4 cut(s) 46, 424, 494, 621
CviAII CATG 5 cut(s) 199, 347, 497, 593, 980
CviQI GTAC 4 cut(s) 46, 424, 494, 621
DdeI CTNAG 3 cut(s) 815, 846, 906
DinI GGCGCC 1 cut(s) 94
DpnI GATC 8 cut(s) 8, 84, 182, 504, 696, 735, 783, 808
DpnII GATC 8 cut(s) 6, 82, 180, 502, 694, 733, 781, 806
DriI GACNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 849
Eam1105I GACNNNNNGTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 849
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 1025
EcoICRI GAGCTC 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 925
EcoT38I GRGCYC 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
FaeI CATG 5 cut(s) 202, 350, 500, 596, 983
FalI AAGNNNNNCTT 4 cut(s) 783, 815, 1023, 1055
FaqI GGGAC 1 cut(s) 563
FatI CATG 5 cut(s) 198, 346, 496, 592, 979
FbaI TGATCA 2 cut(s) 502, 781
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 37, 446, 1059, 1062
FokI GGATG 3 cut(s) 230, 320, 932
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 4 cut(s) 37, 446, 1059, 1062
FspBI CTAG 1 cut(s) 252
GlaI GCGC 2 cut(s) 94, 599
GluI GCNGC 4 cut(s) 37, 446, 1059, 1062
GsuI CTGGAG 1 cut(s) 935
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 39
HgaI GACGC 1 cut(s) 194
HhaI GCGC 2 cut(s) 95, 600
Hin1I GRCGYC 2 cut(s) 93, 186
Hin1II CATG 5 cut(s) 202, 350, 500, 596, 983
Hin6I GCGC 2 cut(s) 93, 598
HinP1I GCGC 2 cut(s) 93, 598
HincII GTYRAC 1 cut(s) 969
HindII GTYRAC 1 cut(s) 969
HinfI GANTC 4 cut(s) 75, 166, 629, 898
HphI GGTGA 2 cut(s) 256, 512
Hpy166II GTNNAC 3 cut(s) 28, 494, 969
Hpy188I TCNGA 7 cut(s) 165, 302, 532, 634, 669, 847, 1044
Hpy188III TCNNGA 3 cut(s) 313, 506, 1108
Hpy8I GTNNAC 3 cut(s) 28, 494, 969
Hpy99I CGWCG 7 cut(s) 14, 17, 35, 101, 104, 188, 306
HpyAV CCTTC 2 cut(s) 50, 866
HpyCH4III ACNGT 6 cut(s) 174, 214, 488, 625, 702, 719
HpyCH4IV ACGT 3 cut(s) 30, 158, 541
HpyCH4V TGCA 5 cut(s) 923, 935, 964, 994, 1061
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 185, 597
HpyF3I CTNAG 3 cut(s) 815, 846, 906
HpySE526I ACGT 3 cut(s) 30, 158, 541
Hsp92I GRCGYC 2 cut(s) 93, 186
Hsp92II CATG 5 cut(s) 202, 350, 500, 596, 983
HspAI GCGC 2 cut(s) 93, 598
KasI GGCGCC 1 cut(s) 92
Ksp22I TGATCA 2 cut(s) 502, 781
Kzo9I GATC 8 cut(s) 6, 82, 180, 502, 694, 733, 781, 806
LmnI GCTCC 7 cut(s) 26, 343, 409, 442, 588, 661, 748
Lsp1109I GCAGC 2 cut(s) 1045, 1073
LweI GCATC 4 cut(s) 40, 910, 951, 1035
MaeI CTAG 1 cut(s) 252
MaeII ACGT 3 cut(s) 30, 158, 541
MaeIII GTNAC 1 cut(s) 154
MalI GATC 8 cut(s) 8, 84, 182, 504, 696, 735, 783, 808
MbiI CCGCTC 1 cut(s) 445
MboI GATC 8 cut(s) 6, 82, 180, 502, 694, 733, 781, 806
MflI RGATCY 1 cut(s) 806
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 2 cut(s) 724, 827
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 325
Mph1103I ATGCAT 1 cut(s) 925
MseI TTAA 2 cut(s) 108, 1020
MslI CAYNNNNRTG 1 cut(s) 765
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 3 cut(s) 101, 185, 597
NarI GGCGCC 1 cut(s) 93
NdeII GATC 8 cut(s) 6, 82, 180, 502, 694, 733, 781, 806
NlaIII CATG 5 cut(s) 202, 350, 500, 596, 983
NlaIV GGNNCC 2 cut(s) 94, 590
NmeAIII GCCGAG 1 cut(s) 98
NsiI ATGCAT 1 cut(s) 925
PcsI WCGNNNNNNNCGW 4 cut(s) 21, 96, 192, 665
PfeI GAWTC 3 cut(s) 166, 629, 898
Pfl23II CGTACG 1 cut(s) 45
PkrI GCNGC 4 cut(s) 38, 447, 1060, 1063
Ple19I CGATCG 2 cut(s) 9, 183
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 23
PspLI CGTACG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 94, 590
PstI CTGCAG 1 cut(s) 1063
PstNI CAGNNNCTG 1 cut(s) 1048
PsuI RGATCY 1 cut(s) 806
PvuI CGATCG 2 cut(s) 9, 183
RsaI GTAC 4 cut(s) 47, 425, 495, 622
RsaNI GTAC 4 cut(s) 46, 424, 494, 621
RseI CAYNNNNRTG 1 cut(s) 765
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 108, 1020
SatI GCNGC 4 cut(s) 37, 446, 1059, 1062
Sau3AI GATC 8 cut(s) 6, 82, 180, 502, 694, 733, 781, 806
SchI GAGTC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 4 cut(s) 40, 910, 951, 1035
SfcI CTRYAG 1 cut(s) 1059
SfoI GGCGCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 1 cut(s) 1093
SmoI CTYRAG 1 cut(s) 1093
Sse9I AATT 2 cut(s) 724, 827
SsiI CCGC 5 cut(s) 36, 70, 445, 448, 600
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 1 cut(s) 252
SstI GAGCTC 1 cut(s) 23
TaaI ACNGT 6 cut(s) 174, 214, 488, 625, 702, 719
TaiI ACGT 3 cut(s) 33, 161, 544
TaqI TCGA 5 cut(s) 9, 81, 183, 312, 736
TaqII GACCGA 1 cut(s) 423
TasI AATT 2 cut(s) 724, 827
TatI WGTACW 1 cut(s) 493
TauI GCSGC 2 cut(s) 39, 448
TfiI GAWTC 3 cut(s) 166, 629, 898
Tru1I TTAA 2 cut(s) 108, 1020
Tru9I TTAA 2 cut(s) 108, 1020
TscAI CASTG 1 cut(s) 819
TseI GCWGC 2 cut(s) 1058, 1061
TspDTI ATGAA 2 cut(s) 885, 1050
TspGWI ACGGA 4 cut(s) 13, 33, 71, 674
TspRI CASTG 1 cut(s) 819
XapI RAATTY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.