Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004662.1

Orthogroup ID

OG0009223

Physical Location & Seq

Genomic Coordinates Reverse (-)

18782 .. 21895

Gene Structure 3114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004662.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgacgatcgacgacgagagctccgtctacgtcggcggccttccgtacgacgccacggaggacagtgtccgccaagtcttcgatctgtacggcgccgtcgtcgccgttaagattgtgaatgataatacgagcagaggaaaatgctacggcttcgttacgtttcggaatccacggtcggcgatcgacgccatcaacgacatggacggcaggactgtggatgggagagttgtgagagtgaatgaggtgaggactagaggggggagattaggttttgggagagggagagagagggagaatttccgacgggatgtcgagagggggaggaactgggggaggggtagggagcatgagatggagtacgatgatgttagggagaggtatagggagaggtatagcgataggtctatggagcgtggggataggtacattgttaggtcaagggagcggcggtctgttgagtatgagggggaaatagatgggggatacggtcgtgtacatggtgatcaggaggtaatgagtgagcatttctcggatagagaacgtgtgagggacagggatttggaagatattgagcaaggacacagcaggagccatgagcgcggttgggggagaagaaatcgtactgtggaatctgatagagagagggagatggacagaacggagcttccgaatgatattgttgagaaagatagagatcaacagtcaaggaggtggaacggttcaaattctgttgaccgaaatagtagggagcttttatcccattcaagtgatgatttcaatgatcaggtaaaagaacagcttgaaagatccacactgaggcttgaagaattgaaaaaggagacttctgagatggaagagaagttagaagatgaaggaaaactggttttggatttacagaatcaatctaagaagctggaggatgcattggtaaatgcaaagaagaacacttcacaccagaagatgcaattgaccaagctacatgattgctttatgcaagtaaaagattacagagaaagacttaaaagaagtgaagatgaacttcagatgctggttgaagcagcaacaggggaagatggcattgatgatgttggcttgagggataaaatcctgaccattggcaatgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

375

Amino Acids

43.99

Weight (kDa)

5.37

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19960 AT5G19960
fragaria_vesca	FvH4_1g04100 FvH4_1g04120 FvH4_1g04120
malus_domestica	MD02G1039700.v1.1 MD15G1180600.v1.1
prunus_persica	Prupe.7G236000_v2.0.a1 Prupe.7G236000_v2.0.a1
pyrus_communis	pycom02g03300 pycom15g16200
rosa_chinensis	RchiOBHm_Chr2g0089591
rosa_laevigata	RLG00000016042
rosa_multiflora	Rmu_sc0004662.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151730
rosa_rugosa	Rorug02G0001800 Rorug02G0001800
rosa_samantha	Rh2AG047100 Rh2BG045900 Rh2CG047800 Rh2DG047300
rosa_wichuraiana	Rw2G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	600
AciI	CCGC	5 cut(s)	36, 70, 445, 448, 600
AclWI	GGATC	1 cut(s)	801
AcsI	RAATTY	2 cut(s)	295, 724
AcuI	CTGAAG	1 cut(s)	1025
AcyI	GRCGYC	3 cut(s)	51, 93, 186
AfaI	GTAC	6 cut(s)	47, 89, 359, 425, 495, 622
AfiI	CCNNNNNNNGG	1 cut(s)	816
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	7 cut(s)	723, 765, 778, 803, 824, 832, 1055
AhdI	GACNNNNNGTC	1 cut(s)	308
AloI	GAACNNNNNNTCC	2 cut(s)	649, 681
AluBI	AGCT	6 cut(s)	21, 664, 751, 799, 913, 976
AluI	AGCT	6 cut(s)	21, 664, 751, 799, 913, 976
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	833
AlwI	GGATC	1 cut(s)	801
AlwNI	CAGNNNCTG	1 cut(s)	1048
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	1058
ApoI	RAATTY	2 cut(s)	295, 724
AspLEI	GCGC	2 cut(s)	95, 600
AsuHPI	GGTGA	2 cut(s)	256, 512
BaeI	ACNNNNGTAYC	2 cut(s)	475, 508
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	23
BarI	GAAGNNNNNNTAC	2 cut(s)	604, 636
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	1070
BccI	CCATC	7 cut(s)	197, 212, 346, 470, 643, 844, 1067
BceAI	ACGGC	5 cut(s)	80, 89, 106, 163, 220
BciVI	GTATCC	1 cut(s)	476
BclI	TGATCA	2 cut(s)	502, 781
BcoDI	GTCTC	1 cut(s)	833
BfaI	CTAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	3 cut(s)	37, 446, 1059
BlsI	GCNGC	3 cut(s)	38, 447, 1060
BmeRI	GACNNNNNGTC	1 cut(s)	308
BmiI	GGNNCC	2 cut(s)	94, 590
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	3 cut(s)	910, 951, 1035
BmuI	ACTGGG	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpmI	CTGGAG	1 cut(s)	935
BpuEI	CTTGAG	1 cut(s)	1114
BsaBI	GATNNNNATC	1 cut(s)	693
BsaHI	GRCGYC	3 cut(s)	51, 93, 186
BsaJI	CCNNGG	2 cut(s)	54, 170
BsaXI	ACNNNNNCTCC	6 cut(s)	5, 35, 253, 283, 434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	816
Bse1I	ACTGG	2 cut(s)	332, 885
Bse3DI	GCAATG	1 cut(s)	1126
Bse8I	GATNNNNATC	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	54, 170
BseGI	GGATG	3 cut(s)	223, 313, 925
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	1 cut(s)	816
BseMI	GCAATG	1 cut(s)	1126
BseMII	CTCAG	2 cut(s)	806, 837
BseNI	ACTGG	2 cut(s)	332, 885
BseXI	GCAGC	1 cut(s)	1070
Bsh1236I	CGCG	1 cut(s)	600
Bsh1285I	CGRYCG	4 cut(s)	9, 176, 183, 490
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	92
BsiEI	CGRYCG	4 cut(s)	9, 176, 183, 490
BsiHKAI	GWGCWC	1 cut(s)	23
BsiWI	CGTACG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	1 cut(s)	816
BsmAI	GTCTC	1 cut(s)	833
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp1407I	TGTACA	1 cut(s)	493
Bsp143I	GATC	7 cut(s)	6, 82, 180, 502, 694, 781, 806
BspACI	CCGC	5 cut(s)	36, 70, 445, 448, 600
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	807, 838
BspFNI	CGCG	1 cut(s)	600
BspLI	GGNNCC	2 cut(s)	94, 590
BspPI	GGATC	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	1126
BsrGI	TGTACA	1 cut(s)	493
BsrI	ACTGG	2 cut(s)	332, 885
BssECI	CCNNGG	2 cut(s)	54, 170
BssMI	GATC	7 cut(s)	6, 82, 180, 502, 694, 781, 806
BssNI	GRCGYC	3 cut(s)	51, 93, 186
Bst4CI	ACNGT	7 cut(s)	65, 174, 214, 488, 625, 702, 719
Bst6I	CTCTTC	1 cut(s)	849
BstACI	GRCGYC	3 cut(s)	51, 93, 186
BstAUI	TGTACA	1 cut(s)	493
BstDEI	CTNAG	3 cut(s)	815, 846, 906
BstDSI	CCRYGG	2 cut(s)	54, 170
BstF5I	GGATG	3 cut(s)	223, 313, 925
BstFNI	CGCG	1 cut(s)	600
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	95, 600
BstKTI	GATC	7 cut(s)	9, 85, 183, 505, 697, 784, 809
BstMAI	GTCTC	1 cut(s)	833
BstMBI	GATC	7 cut(s)	6, 82, 180, 502, 694, 781, 806
BstMCI	CGRYCG	4 cut(s)	9, 176, 183, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 185, 597
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	1070
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	806
BstYI	RGATCY	1 cut(s)	806
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	2 cut(s)	54, 170
BtsCI	GGATG	3 cut(s)	223, 313, 925
BtsIMutI	CAGTG	2 cut(s)	70, 812
CaiI	CAGNNNCTG	1 cut(s)	1048
CfoI	GCGC	2 cut(s)	95, 600
CseI	GACGC	2 cut(s)	59, 194
Csp6I	GTAC	6 cut(s)	46, 88, 358, 424, 494, 621
CviAII	CATG	5 cut(s)	199, 347, 497, 593, 980
CviQI	GTAC	6 cut(s)	46, 88, 358, 424, 494, 621
DdeI	CTNAG	3 cut(s)	815, 846, 906
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	7 cut(s)	8, 84, 182, 504, 696, 783, 808
DpnII	GATC	7 cut(s)	6, 82, 180, 502, 694, 781, 806
DriI	GACNNNNNGTC	1 cut(s)	308
Eam1104I	CTCTTC	1 cut(s)	849
Eam1105I	GACNNNNNGTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	849
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	1025
EcoICRI	GAGCTC	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	925
EcoT38I	GRGCYC	1 cut(s)	23
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
FaeI	CATG	5 cut(s)	202, 350, 500, 596, 983
FalI	AAGNNNNNCTT	4 cut(s)	783, 815, 1023, 1055
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	5 cut(s)	198, 346, 496, 592, 979
FbaI	TGATCA	2 cut(s)	502, 781
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	37, 446, 1059
FokI	GGATG	3 cut(s)	230, 320, 932
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	3 cut(s)	37, 446, 1059
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	2 cut(s)	94, 599
GluI	GCNGC	3 cut(s)	37, 446, 1059
GsuI	CTGGAG	1 cut(s)	935
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	39
HgaI	GACGC	2 cut(s)	59, 194
HhaI	GCGC	2 cut(s)	95, 600
Hin1I	GRCGYC	3 cut(s)	51, 93, 186
Hin1II	CATG	5 cut(s)	202, 350, 500, 596, 983
Hin6I	GCGC	2 cut(s)	93, 598
HinP1I	GCGC	2 cut(s)	93, 598
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HinfI	GANTC	3 cut(s)	166, 629, 898
HphI	GGTGA	2 cut(s)	256, 512
Hpy166II	GTNNAC	3 cut(s)	28, 494, 733
Hpy188I	TCNGA	7 cut(s)	165, 302, 532, 634, 669, 847, 1044
Hpy188III	TCNNGA	3 cut(s)	313, 506, 1108
Hpy8I	GTNNAC	3 cut(s)	28, 494, 733
Hpy99I	CGWCG	8 cut(s)	14, 17, 35, 53, 101, 104, 188, 306
HpyAV	CCTTC	2 cut(s)	50, 866
HpyCH4III	ACNGT	7 cut(s)	65, 174, 214, 488, 625, 702, 719
HpyCH4IV	ACGT	3 cut(s)	30, 158, 541
HpyCH4V	TGCA	4 cut(s)	923, 935, 964, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 185, 597
HpyF3I	CTNAG	3 cut(s)	815, 846, 906
HpySE526I	ACGT	3 cut(s)	30, 158, 541
Hsp92I	GRCGYC	3 cut(s)	51, 93, 186
Hsp92II	CATG	5 cut(s)	202, 350, 500, 596, 983
HspAI	GCGC	2 cut(s)	93, 598
KasI	GGCGCC	1 cut(s)	92
Ksp22I	TGATCA	2 cut(s)	502, 781
Kzo9I	GATC	7 cut(s)	6, 82, 180, 502, 694, 781, 806
LmnI	GCTCC	7 cut(s)	26, 343, 409, 442, 588, 661, 748
Lsp1109I	GCAGC	1 cut(s)	1070
LweI	GCATC	3 cut(s)	910, 951, 1035
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	3 cut(s)	30, 158, 541
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	7 cut(s)	8, 84, 182, 504, 696, 783, 808
MbiI	CCGCTC	1 cut(s)	445
MboI	GATC	7 cut(s)	6, 82, 180, 502, 694, 781, 806
MfeI	CAATTG	1 cut(s)	965
MflI	RGATCY	1 cut(s)	806
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	4 cut(s)	295, 724, 827, 965
Mly113I	GGCGCC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	325
Mph1103I	ATGCAT	1 cut(s)	925
MseI	TTAA	2 cut(s)	108, 1020
MslI	CAYNNNNRTG	1 cut(s)	765
MunI	CAATTG	1 cut(s)	965
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	3 cut(s)	101, 185, 597
NarI	GGCGCC	1 cut(s)	93
NdeII	GATC	7 cut(s)	6, 82, 180, 502, 694, 781, 806
NlaIII	CATG	5 cut(s)	202, 350, 500, 596, 983
NlaIV	GGNNCC	2 cut(s)	94, 590
NsiI	ATGCAT	1 cut(s)	925
PcsI	WCGNNNNNNNCGW	4 cut(s)	21, 96, 192, 665
PfeI	GAWTC	3 cut(s)	166, 629, 898
Pfl23II	CGTACG	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	38, 447, 1060
Ple19I	CGATCG	2 cut(s)	9, 183
PluTI	GGCGCC	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	23
PspLI	CGTACG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	94, 590
PstNI	CAGNNNCTG	1 cut(s)	1048
PsuI	RGATCY	1 cut(s)	806
PsyI	GACNNNGTC	1 cut(s)	65
PvuI	CGATCG	2 cut(s)	9, 183
RsaI	GTAC	6 cut(s)	47, 89, 359, 425, 495, 622
RsaNI	GTAC	6 cut(s)	46, 88, 358, 424, 494, 621
RseI	CAYNNNNRTG	1 cut(s)	765
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	108, 1020
SatI	GCNGC	3 cut(s)	37, 446, 1059
Sau3AI	GATC	7 cut(s)	6, 82, 180, 502, 694, 781, 806
SduI	GDGCHC	1 cut(s)	23
SfaNI	GCATC	3 cut(s)	910, 951, 1035
SfoI	GGCGCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	1093
SmoI	CTYRAG	1 cut(s)	1093
Sse9I	AATT	4 cut(s)	295, 724, 827, 965
SsiI	CCGC	5 cut(s)	36, 70, 445, 448, 600
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	252
SstI	GAGCTC	1 cut(s)	23
TaaI	ACNGT	7 cut(s)	65, 174, 214, 488, 625, 702, 719
TaiI	ACGT	3 cut(s)	33, 161, 544
TaqI	TCGA	4 cut(s)	9, 81, 183, 312
TaqII	GACCGA	1 cut(s)	750
TasI	AATT	4 cut(s)	295, 724, 827, 965
TatI	WGTACW	1 cut(s)	493
TauI	GCSGC	2 cut(s)	39, 448
TfiI	GAWTC	3 cut(s)	166, 629, 898
Tru1I	TTAA	2 cut(s)	108, 1020
Tru9I	TTAA	2 cut(s)	108, 1020
TscAI	CASTG	2 cut(s)	70, 819
TseI	GCWGC	1 cut(s)	1058
TspDTI	ATGAA	2 cut(s)	885, 1050
TspGWI	ACGGA	4 cut(s)	13, 33, 71, 674
TspRI	CASTG	2 cut(s)	70, 819
Tth111I	GACNNNGTC	1 cut(s)	65
XapI	RAATTY	2 cut(s)	295, 724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.