MD15G1180600.v1.1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009223
Physical Location & Seq
Forward (+)
14199556 .. 14202526
2971 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1180600.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGACGATAGACGACGAGAGCTCCGTCTACATCGGAGGCCTTCCGTACGACGCCACCGAGGAAACCGTCCGCAGAGTCTTCGAGCTGTACGGTAACGTCATTGCCGTTAAGATTATCAACGACGCGGCGACTCGAGGAAAATGCTATGGCTTTGTCACTTTCAGGAATCCTCGGTCGGCAATTCTCGCCATCAATGAGATGGATGGCAGGACTGTTGATGGAAGAGTGATCAGAGTAAATGAAGTGAGGAGTAGAGGTGGAAGATTGAGTTTTGGGAGAGAGAGGGAGAATTTCCGGCGGAATGCCGAGAGGGGGAGAAATTGGGATAGAAGTAGAGACCATGAGAGGGATTTTAGTCGGGATAGGGACCGGTATAAGGATAGGTACACTGATCAGTCCAGGGAGCGTGACCGTGACAGGTCCCCTGAGGATGTTGGTGAAGAAAGGGATAGACGGTATGAGGGTGAACGCAATTATGATCACGTAAGGGACCATGTTTTGGATATAGATCTTGATCAGGATAGAGTTGCGGTAGATAGCGACCAAGGACAGAGCAGGAACCGTAATCAGGGTAGGGAAAGAGACCGATCTTTGGAGTCTGATAGGGATAGGGATATGGACAAAACCAAAAGCCTTGATAGCACAGGTGACAAGGATGGAGATGACCAGTCAAGGAGATGGAACGGTTCAAATACGGTTGGCCGACAAAGTCGGGACCTCATATCTCATCCAAGTGATGATTACAATGTTCAGGTAAAAGAACAGCTTCACAGATCCATGCGAAGGGTTGAAGAAATTAAAAATGAGACTATTCTGATGGAGGAGAGCATAGAGGAGAAAGAAAAGCTTGTTTTGAATTTACAGAAGAAATCTAAGAAATTGGAGGATGCCTTGATAAATGCAAAGAAGAACTCTTCACACCAGAAGATGAAGCTAACCAAGCTACATAAATCCTTTACGCAAGTAAAAGATTACACTGAAAAACTTAAAAGCTATGAACACGAGCTCCAGTTGCTTGTTGATACAGGAATGTTGGAACATAGTAGCGATGAAGTTGGCTTGAGGGATGAAATCTTGACAATTGGCAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

365

Amino Acids

42.73

Weight (kDa)

6.09

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 78 1.2e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 499
AccI GTMKAC 1 cut(s) 27
AccII CGCG 1 cut(s) 125
AciI CCGC 4 cut(s) 70, 125, 298, 530
AclWI GGATC 1 cut(s) 768
AcoI YGGCCR 1 cut(s) 700
AcsI RAATTY 2 cut(s) 289, 856
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 3 cut(s) 47, 89, 386
AfiI CCNNNNNNNGG 7 cut(s) 312, 346, 376, 499, 568, 592, 783
AgeI ACCGGT 1 cut(s) 369
AgsI TTSAA 3 cut(s) 690, 791, 856
AjnI CCWGG 1 cut(s) 398
AloI GAACNNNNNNTCC 2 cut(s) 990, 1022
AluBI AGCT 8 cut(s) 21, 85, 766, 847, 934, 943, 993, 1006
AluI AGCT 8 cut(s) 21, 85, 766, 847, 934, 943, 993, 1006
Alw21I GWGCWC 2 cut(s) 23, 1008
Alw26I GTCTC 3 cut(s) 330, 576, 800
AlwI GGATC 1 cut(s) 768
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 2 cut(s) 37, 700
ApoI RAATTY 2 cut(s) 289, 856
AsiGI ACCGGT 1 cut(s) 369
Asp700I GAANNNNTTC 1 cut(s) 765
AspS9I GGNCC 4 cut(s) 367, 420, 490, 715
AsuHPI GGTGA 3 cut(s) 449, 476, 659
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 4 cut(s) 367, 420, 490, 715
AxyI CCTNAGG 1 cut(s) 426
BanII GRGCYC 2 cut(s) 23, 1008
BauI CACGAG 1 cut(s) 1001
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 23, 1008
BccI CCATC 7 cut(s) 193, 197, 197, 212, 650, 672, 811
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 123, 157
BciT130I CCWGG 1 cut(s) 400
BclI TGATCA 4 cut(s) 228, 391, 478, 514
BcoDI GTCTC 3 cut(s) 330, 576, 800
BglII AGATCT 1 cut(s) 508
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 400
Bme18I GGWCC 4 cut(s) 367, 420, 490, 715
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 4 cut(s) 367, 420, 490, 715
BmiI GGNNCC 5 cut(s) 368, 422, 491, 560, 716
BmrFI CCNGG 1 cut(s) 400
BmsI GCATC 1 cut(s) 877
BpiI GAAGAC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 992
BpuEI CTTGAG 1 cut(s) 1081
BsaAI YACGTR 1 cut(s) 484
BsaBI GATNNNNATC 2 cut(s) 507, 513
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 2 cut(s) 330, 576
BsaJI CCNNGG 4 cut(s) 57, 170, 399, 544
BsaWI WCCGGW 1 cut(s) 369
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 241, 271, 990, 1020
Bsc4I CCNNNNNNNGG 7 cut(s) 312, 346, 376, 499, 568, 592, 783
Bse118I RCCGGY 1 cut(s) 369
Bse1I ACTGG 2 cut(s) 667, 1009
Bse21I CCTNAGG 1 cut(s) 426
Bse3DI GCAATG 2 cut(s) 99, 1093
Bse8I GATNNNNATC 2 cut(s) 507, 513
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 4 cut(s) 57, 170, 399, 544
BseGI GGATG 6 cut(s) 208, 436, 661, 727, 892, 1072
BseJI GATNNNNATC 2 cut(s) 507, 513
BseLI CCNNNNNNNGG 7 cut(s) 312, 346, 376, 499, 568, 592, 783
BseMI GCAATG 2 cut(s) 99, 1093
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 2 cut(s) 667, 1009
BseRI GAGGAG 3 cut(s) 262, 836, 848
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 176
BshFI GGCC 2 cut(s) 39, 702
BshTI ACCGGT 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 176
BsiHKAI GWGCWC 2 cut(s) 23, 1008
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 2 cut(s) 295, 370
BsiWI CGTACG 1 cut(s) 45
BslFI GGGAC 4 cut(s) 380, 406, 503, 728
BslI CCNNNNNNNGG 7 cut(s) 312, 346, 376, 499, 568, 592, 783
BsmAI GTCTC 3 cut(s) 330, 576, 800
BsmFI GGGAC 4 cut(s) 380, 406, 503, 728
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 2 cut(s) 39, 702
Bso31I GGTCTC 2 cut(s) 330, 576
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 23, 1008
Bsp143I GATC 7 cut(s) 228, 391, 478, 508, 514, 587, 773
BspACI CCGC 4 cut(s) 70, 125, 298, 530
BspANI GGCC 2 cut(s) 39, 702
BspCNI CTCAG 1 cut(s) 418
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 5 cut(s) 368, 422, 491, 560, 716
BspPI GGATC 1 cut(s) 768
BspTNI GGTCTC 2 cut(s) 330, 576
BsrDI GCAATG 2 cut(s) 99, 1093
BsrFI RCCGGY 1 cut(s) 369
BsrI ACTGG 2 cut(s) 667, 1009
BssAI RCCGGY 1 cut(s) 369
BssECI CCNNGG 4 cut(s) 57, 170, 399, 544
BssMI GATC 7 cut(s) 228, 391, 478, 508, 514, 587, 773
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 1001
BssT1I CCWWGG 1 cut(s) 544
Bst2BI CACGAG 1 cut(s) 1001
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 8 cut(s) 67, 92, 214, 413, 456, 563, 686, 697
Bst6I CTCTTC 2 cut(s) 217, 919
BstACI GRCGYC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 484
BstDEI CTNAG 2 cut(s) 426, 873
BstF5I GGATG 6 cut(s) 208, 436, 661, 727, 892, 1072
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 7 cut(s) 231, 394, 481, 511, 517, 590, 776
BstMAI GTCTC 3 cut(s) 330, 576, 800
BstMBI GATC 7 cut(s) 228, 391, 478, 508, 514, 587, 773
BstMCI CGRYCG 1 cut(s) 176
BstMWI GCNNNNNNNGC 4 cut(s) 185, 639, 940, 1012
BstNI CCWGG 1 cut(s) 400
BstSCI CCNGG 1 cut(s) 398
BstUI CGCG 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 2 cut(s) 508, 773
BstYI RGATCY 2 cut(s) 508, 773
Bsu36I CCTNAGG 1 cut(s) 426
BsuRI GGCC 2 cut(s) 39, 702
BtgZI GCGATG 1 cut(s) 1062
BtsCI GGATG 6 cut(s) 208, 436, 661, 727, 892, 1072
BtsIMutI CAGTG 2 cut(s) 387, 975
Cfr10I RCCGGY 1 cut(s) 369
Cfr13I GGNCC 4 cut(s) 367, 420, 490, 715
CseI GACGC 2 cut(s) 59, 131
Csp6I GTAC 3 cut(s) 46, 88, 385
CspAI ACCGGT 1 cut(s) 369
CviAII CATG 4 cut(s) 341, 494, 778, 1092
CviQI GTAC 3 cut(s) 46, 88, 385
DdeI CTNAG 2 cut(s) 426, 873
DpnI GATC 7 cut(s) 230, 393, 480, 510, 516, 589, 775
DpnII GATC 7 cut(s) 228, 391, 478, 508, 514, 587, 773
EaeI YGGCCR 1 cut(s) 700
Eam1104I CTCTTC 2 cut(s) 217, 919
EarI CTCTTC 2 cut(s) 217, 919
EciI GGCGGA 1 cut(s) 313
Ecl136II GAGCTC 2 cut(s) 21, 1006
Eco130I CCWWGG 1 cut(s) 544
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 2 cut(s) 23, 1008
Eco31I GGTCTC 2 cut(s) 330, 576
Eco47I GGWCC 4 cut(s) 367, 420, 490, 715
Eco53kI GAGCTC 2 cut(s) 21, 1006
Eco81I CCTNAGG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 132
EcoICRI GAGCTC 2 cut(s) 21, 1006
EcoO109I RGGNCCY 2 cut(s) 420, 715
EcoRII CCWGG 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 544
EcoT22I ATGCAT 1 cut(s) 1093
EcoT38I GRGCYC 2 cut(s) 23, 1008
ErhI CCWWGG 1 cut(s) 544
FaeI CATG 4 cut(s) 344, 497, 781, 1095
FalI AAGNNNNNCTT 4 cut(s) 750, 782, 831, 863
FaqI GGGAC 4 cut(s) 380, 406, 503, 728
FatI CATG 4 cut(s) 340, 493, 777, 1091
FbaI TGATCA 4 cut(s) 228, 391, 478, 514
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 6 cut(s) 215, 443, 668, 714, 899, 1079
FriOI GRGCYC 2 cut(s) 23, 1008
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 992
HaeIII GGCC 2 cut(s) 39, 702
HapII CCGG 2 cut(s) 295, 370
HgaI GACGC 2 cut(s) 59, 131
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 4 cut(s) 344, 497, 781, 1095
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 4 cut(s) 75, 130, 166, 596
HpaII CCGG 2 cut(s) 295, 370
HphI GGTGA 3 cut(s) 449, 476, 659
Hpy166II GTNNAC 3 cut(s) 28, 387, 467
Hpy188I TCNGA 4 cut(s) 35, 233, 601, 816
Hpy188III TCNNGA 6 cut(s) 163, 359, 512, 518, 713, 1075
Hpy8I GTNNAC 3 cut(s) 28, 387, 467
Hpy99I CGWCG 3 cut(s) 17, 53, 125
HpyAV CCTTC 2 cut(s) 50, 777
HpyCH4III ACNGT 8 cut(s) 67, 92, 214, 413, 456, 563, 686, 697
HpyCH4IV ACGT 2 cut(s) 96, 483
HpyCH4V TGCA 2 cut(s) 902, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 639, 940, 1012
HpyF3I CTNAG 2 cut(s) 426, 873
HpySE526I ACGT 2 cut(s) 96, 483
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 4 cut(s) 344, 497, 781, 1095
Ksp22I TGATCA 4 cut(s) 228, 391, 478, 514
Kzo9I GATC 7 cut(s) 228, 391, 478, 508, 514, 587, 773
LmnI GCTCC 3 cut(s) 26, 403, 1011
LweI GCATC 1 cut(s) 877
MaeII ACGT 2 cut(s) 96, 483
MaeIII GTNAC 5 cut(s) 92, 154, 407, 413, 647
MalI GATC 7 cut(s) 230, 393, 480, 510, 516, 589, 775
MboI GATC 7 cut(s) 228, 391, 478, 508, 514, 587, 773
MboII GAAGA 9 cut(s) 70, 234, 273, 452, 803, 877, 906, 919, 937
MfeI CAATTG 1 cut(s) 1080
MflI RGATCY 2 cut(s) 508, 773
MhlI GDGCHC 2 cut(s) 23, 1008
MluCI AATT 8 cut(s) 180, 289, 319, 472, 795, 856, 878, 1080
MlyI GAGTC 3 cut(s) 84, 124, 605
MmeI TCCRAC 1 cut(s) 1014
Mph1103I ATGCAT 1 cut(s) 1093
MroXI GAANNNNTTC 1 cut(s) 765
MseI TTAA 3 cut(s) 108, 798, 987
MslI CAYNNNNRTG 1 cut(s) 732
MspI CCGG 2 cut(s) 295, 370
MspR9I CCNGG 1 cut(s) 400
MunI CAATTG 1 cut(s) 1080
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 1 cut(s) 400
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 4 cut(s) 185, 639, 940, 1012
NdeII GATC 7 cut(s) 228, 391, 478, 508, 514, 587, 773
NlaIII CATG 4 cut(s) 344, 497, 781, 1095
NlaIV GGNNCC 5 cut(s) 368, 422, 491, 560, 716
NmeAIII GCCGAG 1 cut(s) 331
NmuCI GTSAC 4 cut(s) 154, 407, 413, 647
NsiI ATGCAT 1 cut(s) 1093
PaeR7I CTCGAG 1 cut(s) 132
PceI AGGCCT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 3 cut(s) 21, 54, 102
PctI GAATGC 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 1 cut(s) 166
Pfl23II CGTACG 1 cut(s) 45
PflFI GACNNNGTC 1 cut(s) 708
PflMI CCANNNNNTGG 1 cut(s) 499
PinAI ACCGGT 1 cut(s) 369
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 3 cut(s) 83, 124, 604
PpsI GAGTC 3 cut(s) 83, 124, 604
Ppu21I YACGTR 1 cut(s) 484
PpuMI RGGWCCY 2 cut(s) 420, 715
Psp124BI GAGCTC 2 cut(s) 23, 1008
Psp5II RGGWCCY 2 cut(s) 420, 715
Psp6I CCWGG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 398
PspLI CGTACG 1 cut(s) 45
PspN4I GGNNCC 5 cut(s) 368, 422, 491, 560, 716
PspPI GGNCC 4 cut(s) 367, 420, 490, 715
PspPPI RGGWCCY 2 cut(s) 420, 715
PspXI VCTCGAGB 1 cut(s) 132
PsuI RGATCY 2 cut(s) 508, 773
PsyI GACNNNGTC 1 cut(s) 708
RsaI GTAC 3 cut(s) 47, 89, 386
RsaNI GTAC 3 cut(s) 46, 88, 385
RseI CAYNNNNRTG 1 cut(s) 732
SacI GAGCTC 2 cut(s) 23, 1008
SaqAI TTAA 3 cut(s) 108, 798, 987
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 7 cut(s) 228, 391, 478, 508, 514, 587, 773
Sau96I GGNCC 4 cut(s) 367, 420, 490, 715
SchI GAGTC 3 cut(s) 84, 124, 605
ScrFI CCNGG 1 cut(s) 400
SduI GDGCHC 2 cut(s) 23, 1008
SfaNI GCATC 1 cut(s) 877
Sfr274I CTCGAG 1 cut(s) 132
SinI GGWCC 4 cut(s) 367, 420, 490, 715
SlaI CTCGAG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 2 cut(s) 132, 1060
SmoI CTYRAG 2 cut(s) 132, 1060
Sse9I AATT 8 cut(s) 180, 289, 319, 472, 795, 856, 878, 1080
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 4 cut(s) 70, 125, 298, 530
SstI GAGCTC 2 cut(s) 23, 1008
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 398
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 8 cut(s) 67, 92, 214, 413, 456, 563, 686, 697
TaiI ACGT 2 cut(s) 99, 486
TaqI TCGA 2 cut(s) 81, 133
TaqII GACCGA 2 cut(s) 162, 600
TasI AATT 8 cut(s) 180, 289, 319, 472, 795, 856, 878, 1080
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 3 cut(s) 108, 798, 987
Tru9I TTAA 3 cut(s) 108, 798, 987
TscAI CASTG 2 cut(s) 394, 982
TseFI GTSAC 4 cut(s) 154, 407, 413, 647
Tsp45I GTSAC 4 cut(s) 154, 407, 413, 647
TspDTI ATGAA 5 cut(s) 255, 944, 1011, 1065, 1083
TspGWI ACGGA 2 cut(s) 13, 33
TspRI CASTG 2 cut(s) 394, 982
Tth111I GACNNNGTC 1 cut(s) 708
Van91I CCANNNNNTGG 1 cut(s) 499
VpaK11BI GGWCC 4 cut(s) 367, 420, 490, 715
XapI RAATTY 2 cut(s) 289, 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XhoI CTCGAG 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 765
Zsp2I ATGCAT 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.