RLG00000016042

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009223
Physical Location & Seq
Forward (+)
3402946 .. 3406089
3144 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016042

Sequence Viewer

Length: 1128 bp
ATGACGATCGACGACGAGAGCTCCGTCTACGTCGGCGGTCTTCCGTACGACGCCACCGAGGACAGTGTCCGCCAAGTCTTCGATCTGTACGGCGCCGTCGTCGCCGTTAAGATTGTGAATGATAACACGAGCAGAGGAAAATGCTACGGCTTCGTTACTTTTCGGAATCCACGGTCGGCGATCGACGCCATCAACGACATGGACGGCAGGACTGTGGATGGGAGAGTTGTGAGAGTGAATGAGGTGAGGACTAGAGGGGGGAGATTAGGTTTTGGTAGAGGGAGAGAGAGGGAGAGTTTCCGACGGGATTTCGAGAGGGGGAGGAACTGGGGGAGAGGTAGGGAGCATGAGATGGAGTATGATGATGTTAGGGAGAGGTATAGGGCGAGGTATAGTGATAGGTCTATGGAGCGTGGGGATAGGTACATTGTTCGCTCAAGGGAGCGGCGGTCTGTTGAGTATGAGGGGGAAATAGATGGGGGATACGATCGTGTACATGGTGATCATGAGGTAATGAGTGAGCATTTCTCAGATAGAGAACGTGTGAGGGACAGGGATTTGGAAGATATTGAGCAAGGACACACCAGGAGCCATGAGCGGGGTTGGGGGAGAAGAAATCGTACCGTGGAATCTGATAGAGAGAGGGAGATGGACAGAACCGAGCTTCCGAATGATATTGTTGAGAAGGATAGAGATCAACAGTCAAGGAGGTGGAACGGTTCAAATTCTGTTGACCGAAATAGTAGGGAGCTTTTATCCCATTCAAGTGATGATTTCAATGATCAGGTAAAAGAACAGCTTGAAAGATCCACACTGAGGCTTGAAGAATTGAAAAAGGAGACTTCTGAGATGGAAGAGAAGTTAGAAGATGAAGGAAAACTGGTTTTGGATTTACAGAATCAATCTAAGAAGCTGGAGGATGCATTGGTAAATGCAAAGAAGAACACTTCACACCAGAAGATGCAGTTGACCAAGCTACATGATTGCTTTATGCAAGTAAAAGATTACAGAGAAAGACTTAAAAGAAGTGAAGATGAACTTCAGATGCTGGTTGAAACAGCAACAGGGGAAGATGGCATTGATGATGTTGGCTTGAGGGATAAAATCCTGACTATTGGCAATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

376

Amino Acids

44.07

Weight (kDa)

5.41

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 78 2.7e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccBSI CCGCTC 2 cut(s) 445, 598
AccI GTMKAC 1 cut(s) 27
AciI CCGC 5 cut(s) 36, 70, 445, 448, 598
AclWI GGATC 1 cut(s) 801
AcsI RAATTY 1 cut(s) 724
AcuI CTGAAG 1 cut(s) 1025
AcyI GRCGYC 3 cut(s) 51, 93, 186
AfaI GTAC 5 cut(s) 47, 89, 425, 495, 622
AfiI CCNNNNNNNGG 2 cut(s) 598, 816
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 7 cut(s) 723, 765, 778, 803, 824, 832, 1055
AjnI CCWGG 1 cut(s) 584
AloI GAACNNNNNNTCC 2 cut(s) 649, 681
AluBI AGCT 6 cut(s) 21, 664, 751, 799, 913, 976
AluI AGCT 6 cut(s) 21, 664, 751, 799, 913, 976
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 833
AlwI GGATC 1 cut(s) 801
AlwNI CAGNNNCTG 1 cut(s) 1048
ApoI RAATTY 1 cut(s) 724
AspLEI GCGC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 256, 512
BaeI ACNNNNGTAYC 2 cut(s) 475, 508
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 604, 636
BauI CACGAG 1 cut(s) 127
BbsI GAAGAC 2 cut(s) 32, 70
Bbv12I GWGCWC 1 cut(s) 23
BccI CCATC 7 cut(s) 197, 212, 346, 470, 643, 844, 1067
BceAI ACGGC 5 cut(s) 80, 89, 106, 163, 220
BciT130I CCWGG 1 cut(s) 586
BciVI GTATCC 1 cut(s) 476
BclI TGATCA 2 cut(s) 502, 781
BcoDI GTCTC 1 cut(s) 833
BfaI CTAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 96
BfuI GTATCC 1 cut(s) 476
BisI GCNGC 1 cut(s) 446
BlsI GCNGC 1 cut(s) 447
Bme1390I CCNGG 1 cut(s) 586
BmiI GGNNCC 2 cut(s) 94, 590
BmrFI CCNGG 1 cut(s) 586
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 3 cut(s) 910, 951, 1035
BmuI ACTGGG 1 cut(s) 337
BpiI GAAGAC 2 cut(s) 32, 70
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BpmI CTGGAG 1 cut(s) 935
BpuEI CTTGAG 2 cut(s) 421, 1114
BsaBI GATNNNNATC 1 cut(s) 693
BsaHI GRCGYC 3 cut(s) 51, 93, 186
BsaJI CCNNGG 3 cut(s) 57, 170, 624
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 253, 283, 434, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 598, 816
Bse1I ACTGG 2 cut(s) 332, 885
Bse3DI GCAATG 1 cut(s) 1126
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 1 cut(s) 586
BseDI CCNNGG 3 cut(s) 57, 170, 624
BseGI GGATG 2 cut(s) 223, 925
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 2 cut(s) 598, 816
BseMI GCAATG 1 cut(s) 1126
BseMII CTCAG 3 cut(s) 543, 806, 837
BseNI ACTGG 2 cut(s) 332, 885
Bsh1285I CGRYCG 4 cut(s) 9, 176, 183, 490
BshNI GGYRCC 1 cut(s) 92
BsiEI CGRYCG 4 cut(s) 9, 176, 183, 490
BsiHKAI GWGCWC 1 cut(s) 23
BsiWI CGTACG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 2 cut(s) 598, 816
BsmAI GTCTC 1 cut(s) 833
BsmFI GGGAC 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 493
Bsp143I GATC 8 cut(s) 6, 82, 180, 487, 502, 694, 781, 806
BspACI CCGC 5 cut(s) 36, 70, 445, 448, 598
BspCNI CTCAG 3 cut(s) 542, 807, 838
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 2 cut(s) 94, 590
BspPI GGATC 1 cut(s) 801
BspT107I GGYRCC 1 cut(s) 92
BsrBI CCGCTC 2 cut(s) 445, 598
BsrDI GCAATG 1 cut(s) 1126
BsrGI TGTACA 1 cut(s) 493
BsrI ACTGG 2 cut(s) 332, 885
BssECI CCNNGG 3 cut(s) 57, 170, 624
BssMI GATC 8 cut(s) 6, 82, 180, 487, 502, 694, 781, 806
BssNI GRCGYC 3 cut(s) 51, 93, 186
BssSI CACGAG 1 cut(s) 127
Bst2BI CACGAG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 586
Bst4CI ACNGT 6 cut(s) 65, 174, 214, 625, 702, 719
Bst6I CTCTTC 1 cut(s) 849
BstACI GRCGYC 3 cut(s) 51, 93, 186
BstAUI TGTACA 1 cut(s) 493
BstDEI CTNAG 4 cut(s) 529, 815, 846, 906
BstDSI CCRYGG 2 cut(s) 170, 624
BstF5I GGATG 2 cut(s) 223, 925
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 8 cut(s) 9, 85, 183, 490, 505, 697, 784, 809
BstMAI GTCTC 1 cut(s) 833
BstMBI GATC 8 cut(s) 6, 82, 180, 487, 502, 694, 781, 806
BstMCI CGRYCG 4 cut(s) 9, 176, 183, 490
BstMWI GCNNNNNNNGC 2 cut(s) 101, 185
BstNI CCWGG 1 cut(s) 586
BstSCI CCNGG 1 cut(s) 584
BstV2I GAAGAC 2 cut(s) 32, 70
BstX2I RGATCY 1 cut(s) 806
BstYI RGATCY 1 cut(s) 806
BsuI GTATCC 1 cut(s) 476
BtgI CCRYGG 2 cut(s) 170, 624
BtsCI GGATG 2 cut(s) 223, 925
BtsIMutI CAGTG 2 cut(s) 70, 812
CaiI CAGNNNCTG 1 cut(s) 1048
CciI TCATGA 1 cut(s) 505
CfoI GCGC 1 cut(s) 95
CseI GACGC 2 cut(s) 59, 194
Csp6I GTAC 5 cut(s) 46, 88, 424, 494, 621
CviAII CATG 6 cut(s) 199, 347, 497, 506, 593, 980
CviQI GTAC 5 cut(s) 46, 88, 424, 494, 621
DdeI CTNAG 4 cut(s) 529, 815, 846, 906
DinI GGCGCC 1 cut(s) 94
DpnI GATC 8 cut(s) 8, 84, 182, 489, 504, 696, 783, 808
DpnII GATC 8 cut(s) 6, 82, 180, 487, 502, 694, 781, 806
Eam1104I CTCTTC 1 cut(s) 849
EarI CTCTTC 1 cut(s) 849
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 1025
EcoICRI GAGCTC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 584
EcoT22I ATGCAT 1 cut(s) 925
EcoT38I GRGCYC 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
FaeI CATG 6 cut(s) 202, 350, 500, 509, 596, 983
FalI AAGNNNNNCTT 4 cut(s) 783, 815, 1023, 1055
FaqI GGGAC 1 cut(s) 563
FatI CATG 6 cut(s) 198, 346, 496, 505, 592, 979
FauI CCCGC 1 cut(s) 591
FbaI TGATCA 2 cut(s) 502, 781
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 446
FokI GGATG 2 cut(s) 230, 932
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 446
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 446
GsuI CTGGAG 1 cut(s) 935
HaeII RGCGCY 1 cut(s) 96
HgaI GACGC 2 cut(s) 59, 194
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 3 cut(s) 51, 93, 186
Hin1II CATG 6 cut(s) 202, 350, 500, 509, 596, 983
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 2 cut(s) 733, 969
HindII GTYRAC 2 cut(s) 733, 969
HinfI GANTC 3 cut(s) 166, 629, 898
HphI GGTGA 2 cut(s) 256, 512
Hpy166II GTNNAC 4 cut(s) 28, 494, 733, 969
Hpy188I TCNGA 7 cut(s) 165, 302, 532, 634, 669, 847, 1044
Hpy188III TCNNGA 3 cut(s) 313, 506, 1108
Hpy8I GTNNAC 4 cut(s) 28, 494, 733, 969
Hpy99I CGWCG 8 cut(s) 14, 17, 35, 53, 101, 104, 188, 306
HpyAV CCTTC 2 cut(s) 679, 866
HpyCH4III ACNGT 6 cut(s) 65, 174, 214, 625, 702, 719
HpyCH4IV ACGT 2 cut(s) 30, 541
HpyCH4V TGCA 4 cut(s) 923, 935, 964, 994
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 185
HpyF3I CTNAG 4 cut(s) 529, 815, 846, 906
HpySE526I ACGT 2 cut(s) 30, 541
Hsp92I GRCGYC 3 cut(s) 51, 93, 186
Hsp92II CATG 6 cut(s) 202, 350, 500, 509, 596, 983
HspAI GCGC 1 cut(s) 93
KasI GGCGCC 1 cut(s) 92
Ksp22I TGATCA 2 cut(s) 502, 781
Kzo9I GATC 8 cut(s) 6, 82, 180, 487, 502, 694, 781, 806
LmnI GCTCC 6 cut(s) 26, 343, 409, 442, 588, 748
LweI GCATC 3 cut(s) 910, 951, 1035
MaeI CTAG 1 cut(s) 252
MaeII ACGT 2 cut(s) 30, 541
MaeIII GTNAC 1 cut(s) 154
MalI GATC 8 cut(s) 8, 84, 182, 489, 504, 696, 783, 808
MbiI CCGCTC 2 cut(s) 445, 598
MboI GATC 8 cut(s) 6, 82, 180, 487, 502, 694, 781, 806
MflI RGATCY 1 cut(s) 806
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 2 cut(s) 724, 827
Mly113I GGCGCC 1 cut(s) 93
MmeI TCCRAC 1 cut(s) 325
Mph1103I ATGCAT 1 cut(s) 925
MseI TTAA 2 cut(s) 108, 1020
MslI CAYNNNNRTG 1 cut(s) 765
MspR9I CCNGG 1 cut(s) 586
MvaI CCWGG 1 cut(s) 586
MwoI GCNNNNNNNGC 2 cut(s) 101, 185
NarI GGCGCC 1 cut(s) 93
NdeII GATC 8 cut(s) 6, 82, 180, 487, 502, 694, 781, 806
NlaIII CATG 6 cut(s) 202, 350, 500, 509, 596, 983
NlaIV GGNNCC 2 cut(s) 94, 590
NsiI ATGCAT 1 cut(s) 925
PagI TCATGA 1 cut(s) 505
PcsI WCGNNNNNNNCGW 4 cut(s) 21, 54, 96, 192
PfeI GAWTC 3 cut(s) 166, 629, 898
Pfl23II CGTACG 1 cut(s) 45
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 447
Ple19I CGATCG 3 cut(s) 9, 183, 490
PluTI GGCGCC 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 584
PspGI CCWGG 1 cut(s) 584
PspLI CGTACG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 94, 590
PstNI CAGNNNCTG 1 cut(s) 1048
PsuI RGATCY 1 cut(s) 806
PsyI GACNNNGTC 1 cut(s) 65
PvuI CGATCG 3 cut(s) 9, 183, 490
RsaI GTAC 5 cut(s) 47, 89, 425, 495, 622
RsaNI GTAC 5 cut(s) 46, 88, 424, 494, 621
RseI CAYNNNNRTG 1 cut(s) 765
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 108, 1020
SatI GCNGC 1 cut(s) 446
Sau3AI GATC 8 cut(s) 6, 82, 180, 487, 502, 694, 781, 806
ScrFI CCNGG 1 cut(s) 586
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 3 cut(s) 910, 951, 1035
SfoI GGCGCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 2 cut(s) 436, 1093
SmoI CTYRAG 2 cut(s) 436, 1093
Sse9I AATT 2 cut(s) 724, 827
SsiI CCGC 5 cut(s) 36, 70, 445, 448, 598
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 1 cut(s) 252
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 584
TaaI ACNGT 6 cut(s) 65, 174, 214, 625, 702, 719
TaiI ACGT 2 cut(s) 33, 544
TaqI TCGA 4 cut(s) 9, 81, 183, 312
TaqII GACCGA 1 cut(s) 750
TasI AATT 2 cut(s) 724, 827
TatI WGTACW 1 cut(s) 493
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 3 cut(s) 166, 629, 898
Tru1I TTAA 2 cut(s) 108, 1020
Tru9I TTAA 2 cut(s) 108, 1020
TscAI CASTG 2 cut(s) 70, 819
TspDTI ATGAA 2 cut(s) 885, 1050
TspGWI ACGGA 2 cut(s) 13, 33
TspRI CASTG 2 cut(s) 70, 819
Tth111I GACNNNGTC 1 cut(s) 65
XapI RAATTY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.