Rh2DG047300

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009223
Physical Location & Seq
Forward (+)
3358012 .. 3362452
4441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG047300.1

Sequence Viewer

Length: 927 bp
ATGACGATCGACGACGAGAGCTCCGTCTACGTCGGCGGCCTTCCCTACGATGCCACGGAGGACAGTGTCCGCCGAGTCTTCGATCTATACGGCGCCGTCGTCGCCGTTAAGATTGTGAATGATAATACGAGCAGAGGAAAATGCTACGGCTTCGTTACGTTTCGGAATCCACGGTCGGCGATCGACGCCATCAACGACATGGACGGCAGGACTGTGGATGGGAGAGTTGTGAGAGTGAATGAGGTGAGGACTAGAGGGGGGAGATTAGGTTTTGGGAGAGGGAGAGAGAGGGAGAATTTCCGACGGGATGTCGAGAGGGGGAGGAACTGGGGGAGGGGTAGGGAGCATGAGATGGAGTACGATGATGTTAGGGAGAGGTATAGGGAGAGGTATAGCGATAGGTCTATGGAGCGTGGGGATAGGTACATTGTTAGGTCAAGGGAGCGGCGGTCTGTTGAGTATGAGGGGGAAATAGATGGGGGATACGGTCGTGTACATGGTGATCAGGAGGTAATGAGTGAGCATTTCTCGGATAGAGAACGTGTGAGGGACAGGGATTTGGAAGATATTGAGCAAGGACACAGCAGGAGCCATGAGCGCGGTTGGGGGAGAAGAAATCGTAATGTGGAATCTGATAGAGAGAGGGAGATGGACAGAACGGAGCTTCCGAATGATATTGCTGACAAGGATAGAGATCAACAGTCAAGGAGGTGGAACGGTTCAAATTCTGTTGACCGAAATAGTAGGGAGCTTTTATCCCATTCAAGTGATGATTTCAATGATCAGGTAAAAGAACAGCTTGAAAGATCCACACTGAGGCTTGAAGAATTGAAAAAGGAGACTTCTGAGATGGAAGAGAAGTTAGAAGATGAAGGAAAACTGGTTTTGGATTTACAGAATCAATCTAAGGTACTCCCAAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

308

Amino Acids

36.34

Weight (kDa)

5.39

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 78 4.7e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccBSI CCGCTC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 27
AccII CGCG 1 cut(s) 600
AciI CCGC 5 cut(s) 36, 70, 445, 448, 600
AclWI GGATC 1 cut(s) 801
AcsI RAATTY 2 cut(s) 295, 724
AcyI GRCGYC 2 cut(s) 93, 186
AfaI GTAC 4 cut(s) 359, 425, 495, 912
AfiI CCNNNNNNNGG 1 cut(s) 816
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 6 cut(s) 723, 765, 778, 803, 824, 832
AhdI GACNNNNNGTC 1 cut(s) 308
AloI GAACNNNNNNTCC 2 cut(s) 649, 681
AluBI AGCT 4 cut(s) 21, 664, 751, 799
AluI AGCT 4 cut(s) 21, 664, 751, 799
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 833
AlwI GGATC 1 cut(s) 801
AoxI GGCC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 295, 724
AspLEI GCGC 2 cut(s) 95, 600
AsuHPI GGTGA 2 cut(s) 256, 512
BaeI ACNNNNGTAYC 2 cut(s) 475, 508
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 23
BccI CCATC 6 cut(s) 197, 212, 346, 470, 643, 844
BceAI ACGGC 5 cut(s) 80, 89, 106, 163, 220
BciVI GTATCC 1 cut(s) 476
BclI TGATCA 2 cut(s) 502, 781
BcoDI GTCTC 1 cut(s) 833
BfaI CTAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 96
BfuI GTATCC 1 cut(s) 476
BisI GCNGC 2 cut(s) 37, 446
BlsI GCNGC 2 cut(s) 38, 447
BmeRI GACNNNNNGTC 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 94, 590
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 40
BmuI ACTGGG 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BsaBI GATNNNNATC 1 cut(s) 693
BsaHI GRCGYC 2 cut(s) 93, 186
BsaJI CCNNGG 2 cut(s) 54, 170
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 253, 283, 434, 464
Bsc4I CCNNNNNNNGG 1 cut(s) 816
Bse1I ACTGG 2 cut(s) 332, 885
Bse8I GATNNNNATC 1 cut(s) 693
BseDI CCNNGG 2 cut(s) 54, 170
BseGI GGATG 2 cut(s) 223, 313
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 1 cut(s) 816
BseMII CTCAG 2 cut(s) 806, 837
BseNI ACTGG 2 cut(s) 332, 885
Bsh1236I CGCG 1 cut(s) 600
Bsh1285I CGRYCG 4 cut(s) 9, 176, 183, 490
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 92
BsiEI CGRYCG 4 cut(s) 9, 176, 183, 490
BsiHKAI GWGCWC 1 cut(s) 23
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 816
BsmAI GTCTC 1 cut(s) 833
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 493
Bsp143I GATC 7 cut(s) 6, 82, 180, 502, 694, 781, 806
BspACI CCGC 5 cut(s) 36, 70, 445, 448, 600
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 807, 838
BspFNI CGCG 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 94, 590
BspPI GGATC 1 cut(s) 801
BspT107I GGYRCC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 445
BsrGI TGTACA 1 cut(s) 493
BsrI ACTGG 2 cut(s) 332, 885
BssECI CCNNGG 2 cut(s) 54, 170
BssMI GATC 7 cut(s) 6, 82, 180, 502, 694, 781, 806
BssNI GRCGYC 2 cut(s) 93, 186
Bst4CI ACNGT 6 cut(s) 65, 174, 214, 488, 702, 719
Bst6I CTCTTC 1 cut(s) 849
BstACI GRCGYC 2 cut(s) 93, 186
BstAUI TGTACA 1 cut(s) 493
BstDEI CTNAG 3 cut(s) 815, 846, 906
BstDSI CCRYGG 2 cut(s) 54, 170
BstF5I GGATG 2 cut(s) 223, 313
BstFNI CGCG 1 cut(s) 600
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 600
BstKTI GATC 7 cut(s) 9, 85, 183, 505, 697, 784, 809
BstMAI GTCTC 1 cut(s) 833
BstMBI GATC 7 cut(s) 6, 82, 180, 502, 694, 781, 806
BstMCI CGRYCG 4 cut(s) 9, 176, 183, 490
BstMWI GCNNNNNNNGC 3 cut(s) 101, 185, 597
BstUI CGCG 1 cut(s) 600
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 806
BstYI RGATCY 1 cut(s) 806
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 2 cut(s) 54, 170
BtsCI GGATG 2 cut(s) 223, 313
BtsIMutI CAGTG 2 cut(s) 70, 812
CfoI GCGC 2 cut(s) 95, 600
CseI GACGC 1 cut(s) 194
Csp6I GTAC 4 cut(s) 358, 424, 494, 911
CviAII CATG 4 cut(s) 199, 347, 497, 593
CviJI RGCY 8 cut(s) 21, 39, 150, 591, 664, 751, 799, 820
CviKI_1 RGCY 8 cut(s) 21, 39, 150, 591, 664, 751, 799, 820
CviQI GTAC 4 cut(s) 358, 424, 494, 911
DdeI CTNAG 3 cut(s) 815, 846, 906
DinI GGCGCC 1 cut(s) 94
DpnI GATC 7 cut(s) 8, 84, 182, 504, 696, 783, 808
DpnII GATC 7 cut(s) 6, 82, 180, 502, 694, 781, 806
DriI GACNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 849
Eam1105I GACNNNNNGTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 849
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
FaeI CATG 4 cut(s) 202, 350, 500, 596
FaiI YATR 9 cut(s) 88, 200, 348, 381, 393, 407, 462, 498, 594
FalI AAGNNNNNCTT 2 cut(s) 783, 815
FaqI GGGAC 1 cut(s) 563
FatI CATG 4 cut(s) 198, 346, 496, 592
FbaI TGATCA 2 cut(s) 502, 781
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 37, 446
FokI GGATG 2 cut(s) 230, 320
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 37, 446
FspBI CTAG 1 cut(s) 252
GlaI GCGC 2 cut(s) 94, 599
GluI GCNGC 2 cut(s) 37, 446
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 39
HgaI GACGC 1 cut(s) 194
HhaI GCGC 2 cut(s) 95, 600
Hin1I GRCGYC 2 cut(s) 93, 186
Hin1II CATG 4 cut(s) 202, 350, 500, 596
Hin6I GCGC 2 cut(s) 93, 598
HinP1I GCGC 2 cut(s) 93, 598
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 4 cut(s) 75, 166, 629, 898
HphI GGTGA 2 cut(s) 256, 512
Hpy166II GTNNAC 3 cut(s) 28, 494, 733
Hpy188I TCNGA 6 cut(s) 165, 302, 532, 634, 669, 847
Hpy188III TCNNGA 2 cut(s) 313, 506
Hpy8I GTNNAC 3 cut(s) 28, 494, 733
Hpy99I CGWCG 7 cut(s) 14, 17, 35, 101, 104, 188, 306
HpyAV CCTTC 2 cut(s) 50, 866
HpyCH4III ACNGT 6 cut(s) 65, 174, 214, 488, 702, 719
HpyCH4IV ACGT 3 cut(s) 30, 158, 541
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 185, 597
HpyF3I CTNAG 3 cut(s) 815, 846, 906
HpySE526I ACGT 3 cut(s) 30, 158, 541
Hsp92I GRCGYC 2 cut(s) 93, 186
Hsp92II CATG 4 cut(s) 202, 350, 500, 596
HspAI GCGC 2 cut(s) 93, 598
KasI GGCGCC 1 cut(s) 92
Ksp22I TGATCA 2 cut(s) 502, 781
Kzo9I GATC 7 cut(s) 6, 82, 180, 502, 694, 781, 806
LmnI GCTCC 7 cut(s) 26, 343, 409, 442, 588, 661, 748
LpnPI CCDG 7 cut(s) 193, 313, 491, 538, 571, 770, 866
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 252
MaeII ACGT 3 cut(s) 30, 158, 541
MaeIII GTNAC 1 cut(s) 154
MalI GATC 7 cut(s) 8, 84, 182, 504, 696, 783, 808
MbiI CCGCTC 1 cut(s) 445
MboI GATC 7 cut(s) 6, 82, 180, 502, 694, 781, 806
MboII GAAGA 6 cut(s) 70, 575, 624, 836, 866, 878
MflI RGATCY 1 cut(s) 806
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 3 cut(s) 295, 724, 827
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 325
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 765
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 3 cut(s) 101, 185, 597
NarI GGCGCC 1 cut(s) 93
NdeII GATC 7 cut(s) 6, 82, 180, 502, 694, 781, 806
NlaIII CATG 4 cut(s) 202, 350, 500, 596
NlaIV GGNNCC 2 cut(s) 94, 590
NmeAIII GCCGAG 1 cut(s) 98
PcsI WCGNNNNNNNCGW 4 cut(s) 21, 96, 192, 665
PfeI GAWTC 3 cut(s) 166, 629, 898
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 38, 447
Ple19I CGATCG 2 cut(s) 9, 183
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 94, 590
PsuI RGATCY 1 cut(s) 806
PsyI GACNNNGTC 1 cut(s) 65
PvuI CGATCG 2 cut(s) 9, 183
RsaI GTAC 4 cut(s) 359, 425, 495, 912
RsaNI GTAC 4 cut(s) 358, 424, 494, 911
RseI CAYNNNNRTG 1 cut(s) 765
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 37, 446
Sau3AI GATC 7 cut(s) 6, 82, 180, 502, 694, 781, 806
SchI GAGTC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 1 cut(s) 40
SfoI GGCGCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 765
Sse9I AATT 3 cut(s) 295, 724, 827
SsiI CCGC 5 cut(s) 36, 70, 445, 448, 600
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 1 cut(s) 252
SstI GAGCTC 1 cut(s) 23
TaaI ACNGT 6 cut(s) 65, 174, 214, 488, 702, 719
TaiI ACGT 3 cut(s) 33, 161, 544
TaqI TCGA 4 cut(s) 9, 81, 183, 312
TaqII GACCGA 1 cut(s) 750
TasI AATT 3 cut(s) 295, 724, 827
TatI WGTACW 1 cut(s) 493
TauI GCSGC 2 cut(s) 39, 448
TfiI GAWTC 3 cut(s) 166, 629, 898
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 70, 819
TspDTI ATGAA 1 cut(s) 885
TspGWI ACGGA 3 cut(s) 13, 71, 674
TspRI CASTG 2 cut(s) 70, 819
Tth111I GACNNNGTC 1 cut(s) 65
XapI RAATTY 2 cut(s) 295, 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.