Rh2CG047800

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009223
Physical Location & Seq
Forward (+)
3797282 .. 3800756
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG047800.1

Sequence Viewer

Length: 1116 bp
ATGACGATCGACGACGAGAGCTCCGTCTACGTCGGCGGCCTTCCGTACGATGCCACGGAGGACAGTGTCCGCCGAGTCTTCGATCTATACGGCGCCGTCGTCGCCGTTAAGATTGTGAATGATAATACGAGCAGAGGAAAATGCTACGGCTTCGTTACGTTTCGGAATCCACGGTCGGCGATCGACGCCATCCACGACATGGACGGCAGGACTGTGGATGGGAGAGTTGTGAGAGTGAATGAGGTGAGGACTAGAGGGGGGAGATTAGGTTTTGGGAGAGGGAGAGAGAGGGAGAGTTTCCGACGGGATGTCGAGAGGGGGAGGAACTGGGGGAGGGGTAGGGAGCATGAGATGGAGTACGATGATGTTAGGGAGAGGTATAGCGATAGGTCTATGGAGCGTGGGGATAGGTACATTGTTCGGTCAAGGGAGCGGCGGTCTGTTGAGTATGAGGGGGAAATAGATGGGGGATACGGTCGTGTACATGGTGATCAGGAGGTAATGAGTGAGCATTTCTCGGATAGAGAACGTGTGAGGGACAGGGATTTGGAAGATATTGAGCAAGGACACAGCAGGAGCCATGAGCGCGGTTGGGGGAGAAGAAATCGTACTGTGGAATCTGATAGAGAGAGGGAGATGGACAGAACGGAGCTTCCGAATGATATTGTTGAAAAGGATAGAGATCAACAGTCAAGGAGGTGGAACGGTTCAAATTCTGTTGATCGAAATAGTAGGGAGCTTTTATCCCATTCAAGTGATGATTTCAATGATCAGGTAAAAGAACAGCTTGAAAGATCCACACTGAGGCTTGAAGAATTGAAAAAGGAGACTTCTGAGATGGAAGAGAAGTTAGAAGATGAAGGAAAACTGGTTTTGGATTTACAGAATCAATCTAAGAAGCTGGAGGATGCATTGGTAAATGCAAAGAAGAACACTTCACAACAGAAGATGCAGTTGACCAAGCTACATGATTGCTTTATGCAAGTAAAAGATTACAGAGAAAGACTTAAAAGAAGTGAAGATGAACTTCAGATGCTGGTTGAAGCAGCAGCAGGGGAAGATGGCATTGATGATGTTGGCTTGAGGGATAAAATCCTGACGATTGGCAATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

371

Amino Acids

43.38

Weight (kDa)

5.36

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 78 1.8e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 199
AccBSI CCGCTC 1 cut(s) 433
AccI GTMKAC 1 cut(s) 27
AccII CGCG 1 cut(s) 588
AciI CCGC 5 cut(s) 36, 70, 433, 436, 588
AclWI GGATC 1 cut(s) 789
AcsI RAATTY 1 cut(s) 712
AcuI CTGAAG 1 cut(s) 1013
AcyI GRCGYC 2 cut(s) 93, 186
AfaI GTAC 5 cut(s) 47, 359, 413, 483, 610
AfiI CCNNNNNNNGG 2 cut(s) 199, 804
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 8 cut(s) 671, 711, 753, 766, 791, 812, 820, 1043
AhdI GACNNNNNGTC 1 cut(s) 308
AloI GAACNNNNNNTCC 2 cut(s) 637, 669
AluBI AGCT 6 cut(s) 21, 652, 739, 787, 901, 964
AluI AGCT 6 cut(s) 21, 652, 739, 787, 901, 964
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 821
AlwI GGATC 1 cut(s) 789
AlwNI CAGNNNCTG 1 cut(s) 1036
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 1046, 1049
ApoI RAATTY 1 cut(s) 712
AspLEI GCGC 2 cut(s) 95, 588
AsuHPI GGTGA 2 cut(s) 256, 500
BaeI ACNNNNGTAYC 2 cut(s) 463, 496
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 592, 624
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 1058, 1061
BccI CCATC 7 cut(s) 197, 212, 346, 458, 631, 832, 1055
BceAI ACGGC 5 cut(s) 80, 89, 106, 163, 220
BciVI GTATCC 1 cut(s) 464
BclI TGATCA 2 cut(s) 490, 769
BcoDI GTCTC 1 cut(s) 821
BfaI CTAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 96
BfuI GTATCC 1 cut(s) 464
BisI GCNGC 4 cut(s) 37, 434, 1047, 1050
BlsI GCNGC 4 cut(s) 38, 435, 1048, 1051
BmeRI GACNNNNNGTC 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 94, 578
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 4 cut(s) 40, 898, 939, 1023
BmuI ACTGGG 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 500, 532
BpmI CTGGAG 1 cut(s) 923
BpuEI CTTGAG 1 cut(s) 1102
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 2 cut(s) 93, 186
BsaJI CCNNGG 2 cut(s) 54, 170
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 253, 283, 422, 452
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 804
Bse1I ACTGG 2 cut(s) 332, 873
Bse3DI GCAATG 1 cut(s) 1114
Bse8I GATNNNNATC 1 cut(s) 681
BseDI CCNNGG 2 cut(s) 54, 170
BseGI GGATG 4 cut(s) 189, 223, 313, 913
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 2 cut(s) 199, 804
BseMI GCAATG 1 cut(s) 1114
BseMII CTCAG 2 cut(s) 794, 825
BseNI ACTGG 2 cut(s) 332, 873
BseXI GCAGC 2 cut(s) 1058, 1061
Bsh1236I CGCG 1 cut(s) 588
Bsh1285I CGRYCG 4 cut(s) 9, 176, 183, 478
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 92
BsiEI CGRYCG 4 cut(s) 9, 176, 183, 478
BsiHKAI GWGCWC 1 cut(s) 23
BsiWI CGTACG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 199, 804
BsmAI GTCTC 1 cut(s) 821
BsmFI GGGAC 1 cut(s) 551
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 481
Bsp143I GATC 8 cut(s) 6, 82, 180, 490, 682, 721, 769, 794
BspACI CCGC 5 cut(s) 36, 70, 433, 436, 588
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 795, 826
BspFNI CGCG 1 cut(s) 588
BspLI GGNNCC 2 cut(s) 94, 578
BspPI GGATC 1 cut(s) 789
BspT107I GGYRCC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 1114
BsrGI TGTACA 1 cut(s) 481
BsrI ACTGG 2 cut(s) 332, 873
BssECI CCNNGG 2 cut(s) 54, 170
BssMI GATC 8 cut(s) 6, 82, 180, 490, 682, 721, 769, 794
BssNI GRCGYC 2 cut(s) 93, 186
Bst4CI ACNGT 7 cut(s) 65, 174, 214, 476, 613, 690, 707
Bst6I CTCTTC 1 cut(s) 837
BstACI GRCGYC 2 cut(s) 93, 186
BstAUI TGTACA 1 cut(s) 481
BstDEI CTNAG 3 cut(s) 803, 834, 894
BstDSI CCRYGG 2 cut(s) 54, 170
BstF5I GGATG 4 cut(s) 189, 223, 313, 913
BstFNI CGCG 1 cut(s) 588
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 588
BstKTI GATC 8 cut(s) 9, 85, 183, 493, 685, 724, 772, 797
BstMAI GTCTC 1 cut(s) 821
BstMBI GATC 8 cut(s) 6, 82, 180, 490, 682, 721, 769, 794
BstMCI CGRYCG 4 cut(s) 9, 176, 183, 478
BstMWI GCNNNNNNNGC 3 cut(s) 101, 185, 585
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 2 cut(s) 1058, 1061
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 794
BstYI RGATCY 1 cut(s) 794
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 2 cut(s) 54, 170
BtsCI GGATG 4 cut(s) 189, 223, 313, 913
BtsIMutI CAGTG 2 cut(s) 70, 800
CaiI CAGNNNCTG 1 cut(s) 1036
CfoI GCGC 2 cut(s) 95, 588
CseI GACGC 1 cut(s) 194
Csp6I GTAC 5 cut(s) 46, 358, 412, 482, 609
CviAII CATG 5 cut(s) 199, 347, 485, 581, 968
CviQI GTAC 5 cut(s) 46, 358, 412, 482, 609
DdeI CTNAG 3 cut(s) 803, 834, 894
DinI GGCGCC 1 cut(s) 94
DpnI GATC 8 cut(s) 8, 84, 182, 492, 684, 723, 771, 796
DpnII GATC 8 cut(s) 6, 82, 180, 490, 682, 721, 769, 794
DriI GACNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 837
Eam1105I GACNNNNNGTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 837
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 1013
EcoICRI GAGCTC 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 913
EcoT38I GRGCYC 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
FaeI CATG 5 cut(s) 202, 350, 488, 584, 971
FalI AAGNNNNNCTT 4 cut(s) 771, 803, 1011, 1043
FaqI GGGAC 1 cut(s) 551
FatI CATG 5 cut(s) 198, 346, 484, 580, 967
FbaI TGATCA 2 cut(s) 490, 769
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 37, 434, 1047, 1050
FokI GGATG 4 cut(s) 176, 230, 320, 920
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 4 cut(s) 37, 434, 1047, 1050
FspBI CTAG 1 cut(s) 252
GlaI GCGC 2 cut(s) 94, 587
GluI GCNGC 4 cut(s) 37, 434, 1047, 1050
GsuI CTGGAG 1 cut(s) 923
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 39
HgaI GACGC 1 cut(s) 194
HhaI GCGC 2 cut(s) 95, 588
Hin1I GRCGYC 2 cut(s) 93, 186
Hin1II CATG 5 cut(s) 202, 350, 488, 584, 971
Hin6I GCGC 2 cut(s) 93, 586
HinP1I GCGC 2 cut(s) 93, 586
HincII GTYRAC 1 cut(s) 957
HindII GTYRAC 1 cut(s) 957
HinfI GANTC 4 cut(s) 75, 166, 617, 886
HphI GGTGA 2 cut(s) 256, 500
Hpy166II GTNNAC 3 cut(s) 28, 482, 957
Hpy188I TCNGA 7 cut(s) 165, 302, 520, 622, 657, 835, 1032
Hpy188III TCNNGA 3 cut(s) 313, 494, 1096
Hpy8I GTNNAC 3 cut(s) 28, 482, 957
Hpy99I CGWCG 7 cut(s) 14, 17, 35, 101, 104, 188, 306
HpyAV CCTTC 2 cut(s) 50, 854
HpyCH4III ACNGT 7 cut(s) 65, 174, 214, 476, 613, 690, 707
HpyCH4IV ACGT 3 cut(s) 30, 158, 529
HpyCH4V TGCA 4 cut(s) 911, 923, 952, 982
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 185, 585
HpyF3I CTNAG 3 cut(s) 803, 834, 894
HpySE526I ACGT 3 cut(s) 30, 158, 529
Hsp92I GRCGYC 2 cut(s) 93, 186
Hsp92II CATG 5 cut(s) 202, 350, 488, 584, 971
HspAI GCGC 2 cut(s) 93, 586
KasI GGCGCC 1 cut(s) 92
Ksp22I TGATCA 2 cut(s) 490, 769
Kzo9I GATC 8 cut(s) 6, 82, 180, 490, 682, 721, 769, 794
LmnI GCTCC 7 cut(s) 26, 343, 397, 430, 576, 649, 736
Lsp1109I GCAGC 2 cut(s) 1058, 1061
LweI GCATC 4 cut(s) 40, 898, 939, 1023
MaeI CTAG 1 cut(s) 252
MaeII ACGT 3 cut(s) 30, 158, 529
MaeIII GTNAC 1 cut(s) 154
MalI GATC 8 cut(s) 8, 84, 182, 492, 684, 723, 771, 796
MbiI CCGCTC 1 cut(s) 433
MboI GATC 8 cut(s) 6, 82, 180, 490, 682, 721, 769, 794
MflI RGATCY 1 cut(s) 794
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 2 cut(s) 712, 815
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 325
Mph1103I ATGCAT 1 cut(s) 913
MseI TTAA 2 cut(s) 108, 1008
MslI CAYNNNNRTG 1 cut(s) 753
MvnI CGCG 1 cut(s) 588
MwoI GCNNNNNNNGC 3 cut(s) 101, 185, 585
NarI GGCGCC 1 cut(s) 93
NdeII GATC 8 cut(s) 6, 82, 180, 490, 682, 721, 769, 794
NlaIII CATG 5 cut(s) 202, 350, 488, 584, 971
NlaIV GGNNCC 2 cut(s) 94, 578
NmeAIII GCCGAG 1 cut(s) 98
NsiI ATGCAT 1 cut(s) 913
PcsI WCGNNNNNNNCGW 4 cut(s) 21, 96, 192, 653
PfeI GAWTC 3 cut(s) 166, 617, 886
Pfl23II CGTACG 1 cut(s) 45
PflFI GACNNNGTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 4 cut(s) 38, 435, 1048, 1051
Ple19I CGATCG 2 cut(s) 9, 183
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 23
PspLI CGTACG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 94, 578
PstNI CAGNNNCTG 1 cut(s) 1036
PsuI RGATCY 1 cut(s) 794
PsyI GACNNNGTC 1 cut(s) 65
PvuI CGATCG 2 cut(s) 9, 183
RsaI GTAC 5 cut(s) 47, 359, 413, 483, 610
RsaNI GTAC 5 cut(s) 46, 358, 412, 482, 609
RseI CAYNNNNRTG 1 cut(s) 753
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 108, 1008
SatI GCNGC 4 cut(s) 37, 434, 1047, 1050
Sau3AI GATC 8 cut(s) 6, 82, 180, 490, 682, 721, 769, 794
SchI GAGTC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 4 cut(s) 40, 898, 939, 1023
SfoI GGCGCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 1081
SmoI CTYRAG 1 cut(s) 1081
Sse9I AATT 2 cut(s) 712, 815
SsiI CCGC 5 cut(s) 36, 70, 433, 436, 588
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 1 cut(s) 252
SstI GAGCTC 1 cut(s) 23
TaaI ACNGT 7 cut(s) 65, 174, 214, 476, 613, 690, 707
TaiI ACGT 3 cut(s) 33, 161, 532
TaqI TCGA 5 cut(s) 9, 81, 183, 312, 724
TaqII GACCGA 1 cut(s) 411
TasI AATT 2 cut(s) 712, 815
TatI WGTACW 1 cut(s) 481
TauI GCSGC 2 cut(s) 39, 436
TfiI GAWTC 3 cut(s) 166, 617, 886
Tru1I TTAA 2 cut(s) 108, 1008
Tru9I TTAA 2 cut(s) 108, 1008
TscAI CASTG 2 cut(s) 70, 807
TseI GCWGC 2 cut(s) 1046, 1049
TspDTI ATGAA 2 cut(s) 873, 1038
TspGWI ACGGA 4 cut(s) 13, 33, 71, 662
TspRI CASTG 2 cut(s) 70, 807
Tth111I GACNNNGTC 1 cut(s) 65
Van91I CCANNNNNTGG 1 cut(s) 199
XapI RAATTY 1 cut(s) 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.