Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009223

Physical Location & Seq

Genomic Coordinates Reverse (-)

20503878 .. 20506977

Gene Structure 3100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G236000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGACGATAGACGACGAGAGCTCCGTCTACGTTGGAGGCCTTCCGTACGACGCCACCGAGGATAGAGTTCGCAGAGTTTTTGAGTTGTACGGTTCCGTCATTGCCGTTAAGATTATCAATGATGCTTCGACCAGAGGAAAATGCTATGGCTTTGTTACTTTCAGGAACCCTCGGTCTGCAATTCATGCCATCAATGAGATGGATGGCAGGACTGTTGATGGAAGAGTTATCAGAGTAAATGAAGTGAGGACTAGAGGTGGAAGATTGGGTTTTGGTAGAGACAGAGAAGGTTTTGGACGGAATGTTGAGAGGGGCAGGAACTGGGATAGAGATAGAGATCATGAGAGGGAGTATGATCATGATAGAGACCGGTATAAGGATCGATACAGTGATCGGTCGAGAGAGCACAGTGATCGATCAAGAGAACGTGACCGTGGCCGGTCCCTTGGGGTTGATCAAGAAAGGGATAGAGGGTATGACCGTGAACGTGATTATGATTTCTTGGATAGAGACCGTCATCAAGACAGAGATTTGGAAGATGCCGAGCAAGGACAGAGCAGGAACCATGATCAGGGTTGGGAAAGAGATCGAGCATTGGACTCTGACAGAGATAGGGAGATGGAAAAAAACAAAAATCATACTACTATAGCTGCCAAGGATAGAGATCAACATTCAAGGAGAAGGAACAGTTCAAATTCTGTTGACCGACAAAGTAGGGACCTGTTATCCCATCCCAGTGATGATTACGATGATCAGGTAAAAGAACAGCTCGAGAGATCCATGCGAAGGCTTGAAGAAATAAAAAAGGAGACTATTCAGATGGAGGAGAGTTTGAAAGAGAAAGGAAAACTAGTTTTGGATTTGCAGAAGAAATCTAAGAAATTGGAGGATGCATTGATAAATGCAAAGAAGAACTCTTCACACAATAAGATGAAATTAACCAAGCTACATAAATCCTTTATGCAAGTAAAAGATTACACTGAAAAACTTAAAAGCTGTGAACACGAACTTCAGTTGGGCCAATTTATGCTGTTGTCAAATGGGAAGCCCAAAGTTTGGTCCTCTAAGATCTCAAACCCTCTTTTGATGTTATGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

367

Amino Acids

43.35

Weight (kDa)

8.87

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19960 AT5G19960
fragaria_vesca	FvH4_1g04100 FvH4_1g04120 FvH4_1g04120
malus_domestica	MD02G1039700.v1.1 MD15G1180600.v1.1
prunus_persica	Prupe.7G236000_v2.0.a1 Prupe.7G236000_v2.0.a1
pyrus_communis	pycom02g03300 pycom15g16200
rosa_chinensis	RchiOBHm_Chr2g0089591
rosa_laevigata	RLG00000016042
rosa_multiflora	Rmu_sc0004662.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151730
rosa_rugosa	Rorug02G0001800 Rorug02G0001800
rosa_samantha	Rh2AG047100 Rh2BG045900 Rh2CG047800 Rh2DG047300
rosa_wichuraiana	Rw2G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1056
AccI	GTMKAC	1 cut(s)	27
AclWI	GGATC	2 cut(s)	387, 771
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	995
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	47, 89
AfiI	CCNNNNNNNGG	4 cut(s)	376, 571, 786, 1056
AgeI	ACCGGT	1 cut(s)	369
AgsI	TTSAA	4 cut(s)	675, 693, 794, 835
AhlI	ACTAGT	1 cut(s)	850
AluBI	AGCT	5 cut(s)	21, 650, 769, 946, 996
AluI	AGCT	5 cut(s)	21, 650, 769, 946, 996
Alw21I	GWGCWC	2 cut(s)	23, 408
Alw26I	GTCTC	4 cut(s)	273, 360, 504, 803
AlwI	GGATC	2 cut(s)	387, 771
AlwNI	CAGNNNCTG	1 cut(s)	321
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	3 cut(s)	37, 436, 1018
ApeKI	GCWGC	1 cut(s)	650
ApoI	RAATTY	1 cut(s)	694
AsiGI	ACCGGT	1 cut(s)	369
AspS9I	GGNCC	4 cut(s)	441, 718, 1018, 1059
AvaI	CYCGRG	1 cut(s)	770
AvaII	GGWCC	3 cut(s)	441, 718, 1059
BanII	GRGCYC	1 cut(s)	23
Bbv12I	GWGCWC	2 cut(s)	23, 408
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	7 cut(s)	193, 197, 197, 212, 613, 738, 814
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BclI	TGATCA	4 cut(s)	355, 454, 568, 751
BcoDI	GTCTC	4 cut(s)	273, 360, 504, 803
BcuI	ACTAGT	1 cut(s)	850
BfaI	CTAG	2 cut(s)	252, 851
BfmI	CTRYAG	1 cut(s)	645
BglII	AGATCT	1 cut(s)	1068
BisI	GCNGC	1 cut(s)	651
BlsI	GCNGC	1 cut(s)	652
Bme18I	GGWCC	3 cut(s)	441, 718, 1059
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	4 cut(s)	441, 718, 1018, 1059
BmiI	GGNNCC	5 cut(s)	94, 167, 443, 563, 719
BmrI	ACTGGG	2 cut(s)	331, 729
BmsI	GCATC	3 cut(s)	112, 529, 880
BmuI	ACTGGG	2 cut(s)	331, 729
Bsa29I	ATCGAT	2 cut(s)	382, 415
BsaBI	GATNNNNATC	2 cut(s)	336, 663
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	2 cut(s)	360, 504
BsaJI	CCNNGG	5 cut(s)	57, 170, 433, 445, 654
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	4 cut(s)	376, 571, 786, 1056
Bse118I	RCCGGY	2 cut(s)	369, 438
Bse1I	ACTGG	2 cut(s)	326, 735
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	2 cut(s)	336, 663
BseCI	ATCGAT	2 cut(s)	382, 415
BseDI	CCNNGG	5 cut(s)	57, 170, 433, 445, 654
BseGI	GGATG	3 cut(s)	208, 730, 895
BseJI	GATNNNNATC	2 cut(s)	336, 663
BseLI	CCNNNNNNNGG	4 cut(s)	376, 571, 786, 1056
BseMI	GCAATG	1 cut(s)	99
BseNI	ACTGG	2 cut(s)	326, 735
BseRI	GAGGAG	1 cut(s)	839
BseXI	GCAGC	1 cut(s)	637
Bsh1285I	CGRYCG	1 cut(s)	398
BshFI	GGCC	3 cut(s)	39, 438, 1020
BshTI	ACCGGT	1 cut(s)	369
BshVI	ATCGAT	2 cut(s)	382, 415
BsiEI	CGRYCG	1 cut(s)	398
BsiHKAI	GWGCWC	2 cut(s)	23, 408
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	2 cut(s)	370, 439
BsiWI	CGTACG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	427, 731
BslI	CCNNNNNNNGG	4 cut(s)	376, 571, 786, 1056
BsmAI	GTCTC	4 cut(s)	273, 360, 504, 803
BsmFI	GGGAC	2 cut(s)	427, 731
BsnI	GGCC	3 cut(s)	39, 438, 1020
Bso31I	GGTCTC	2 cut(s)	360, 504
BsoBI	CYCGRG	1 cut(s)	770
Bsp1286I	GDGCHC	2 cut(s)	23, 408
BspANI	GGCC	3 cut(s)	39, 438, 1020
BspDI	ATCGAT	2 cut(s)	382, 415
BspHI	TCATGA	2 cut(s)	340, 358
BspLI	GGNNCC	5 cut(s)	94, 167, 443, 563, 719
BspPI	GGATC	2 cut(s)	387, 771
BspTNI	GGTCTC	2 cut(s)	360, 504
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	2 cut(s)	369, 438
BsrI	ACTGG	2 cut(s)	326, 735
BssAI	RCCGGY	2 cut(s)	369, 438
BssECI	CCNNGG	5 cut(s)	57, 170, 433, 445, 654
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	2 cut(s)	445, 654
Bst4CI	ACNGT	8 cut(s)	92, 214, 389, 410, 434, 482, 515, 689
Bst6I	CTCTTC	2 cut(s)	217, 922
BstACI	GRCGYC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	876, 1065
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	3 cut(s)	208, 730, 895
BstMAI	GTCTC	4 cut(s)	273, 360, 504, 803
BstMCI	CGRYCG	1 cut(s)	398
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	637
BstX2I	RGATCY	2 cut(s)	776, 1068
BstYI	RGATCY	2 cut(s)	776, 1068
Bsu15I	ATCGAT	2 cut(s)	382, 415
BsuRI	GGCC	3 cut(s)	39, 438, 1020
BsuTUI	ATCGAT	2 cut(s)	382, 415
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	208, 730, 895
BtsIMutI	CAGTG	4 cut(s)	394, 415, 742, 978
CaiI	CAGNNNCTG	1 cut(s)	321
CciI	TCATGA	2 cut(s)	340, 358
Cfr10I	RCCGGY	2 cut(s)	369, 438
Cfr13I	GGNCC	4 cut(s)	441, 718, 1018, 1059
ClaI	ATCGAT	2 cut(s)	382, 415
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	46, 88
CspAI	ACCGGT	1 cut(s)	369
CviAII	CATG	5 cut(s)	185, 341, 359, 566, 781
CviQI	GTAC	2 cut(s)	46, 88
DdeI	CTNAG	2 cut(s)	876, 1065
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	2 cut(s)	217, 922
EarI	CTCTTC	2 cut(s)	217, 922
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	445, 654
Eco147I	AGGCCT	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	23
Eco31I	GGTCTC	2 cut(s)	360, 504
Eco47I	GGWCC	3 cut(s)	441, 718, 1059
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	995
Eco88I	CYCGRG	1 cut(s)	770
EcoICRI	GAGCTC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	718
EcoT14I	CCWWGG	2 cut(s)	445, 654
EcoT22I	ATGCAT	1 cut(s)	895
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	2 cut(s)	445, 654
FaeI	CATG	5 cut(s)	188, 344, 362, 569, 784
FaqI	GGGAC	2 cut(s)	427, 731
FatI	CATG	5 cut(s)	184, 340, 358, 565, 780
FbaI	TGATCA	4 cut(s)	355, 454, 568, 751
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	651
FokI	GGATG	3 cut(s)	215, 717, 902
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	651
FspBI	CTAG	2 cut(s)	252, 851
GluI	GCNGC	1 cut(s)	651
HaeIII	GGCC	3 cut(s)	39, 438, 1020
HapII	CCGG	2 cut(s)	370, 439
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	5 cut(s)	188, 344, 362, 569, 784
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	2 cut(s)	370, 439
Hpy166II	GTNNAC	4 cut(s)	28, 485, 703, 1001
Hpy188I	TCNGA	3 cut(s)	233, 604, 819
Hpy188III	TCNNGA	8 cut(s)	163, 341, 359, 399, 420, 458, 521, 772
Hpy8I	GTNNAC	4 cut(s)	28, 485, 703, 1001
Hpy99I	CGWCG	2 cut(s)	17, 53
HpyAV	CCTTC	4 cut(s)	50, 281, 675, 780
HpyCH4III	ACNGT	8 cut(s)	92, 214, 389, 410, 434, 482, 515, 689
HpyCH4IV	ACGT	3 cut(s)	30, 427, 487
HpyCH4V	TGCA	5 cut(s)	179, 865, 893, 905, 964
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	876, 1065
HpySE526I	ACGT	3 cut(s)	30, 427, 487
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	5 cut(s)	188, 344, 362, 569, 784
Ksp22I	TGATCA	4 cut(s)	355, 454, 568, 751
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	1 cut(s)	637
LweI	GCATC	3 cut(s)	112, 529, 880
MaeI	CTAG	2 cut(s)	252, 851
MaeII	ACGT	3 cut(s)	30, 427, 487
MaeIII	GTNAC	2 cut(s)	154, 428
MboII	GAAGA	7 cut(s)	234, 273, 548, 806, 880, 909, 922
MflI	RGATCY	2 cut(s)	776, 1068
MhlI	GDGCHC	2 cut(s)	23, 408
MluCI	AATT	5 cut(s)	180, 694, 881, 935, 1022
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	13
Mph1103I	ATGCAT	1 cut(s)	895
MseI	TTAA	3 cut(s)	108, 938, 990
MslI	CAYNNNNRTG	1 cut(s)	735
MspI	CCGG	2 cut(s)	370, 439
MwoI	GCNNNNNNNGC	1 cut(s)	185
NlaIII	CATG	5 cut(s)	188, 344, 362, 569, 784
NlaIV	GGNNCC	5 cut(s)	94, 167, 443, 563, 719
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	428
NsiI	ATGCAT	1 cut(s)	895
PaeR7I	CTCGAG	1 cut(s)	770
PagI	TCATGA	2 cut(s)	340, 358
PceI	AGGCCT	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 54
Pfl23II	CGTACG	1 cut(s)	45
PflMI	CCANNNNNTGG	1 cut(s)	1056
PinAI	ACCGGT	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	652
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
PpuMI	RGGWCCY	1 cut(s)	718
Psp124BI	GAGCTC	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	718
PspLI	CGTACG	1 cut(s)	45
PspN4I	GGNNCC	5 cut(s)	94, 167, 443, 563, 719
PspPI	GGNCC	4 cut(s)	441, 718, 1018, 1059
PspPPI	RGGWCCY	1 cut(s)	718
PstNI	CAGNNNCTG	1 cut(s)	321
PsuI	RGATCY	2 cut(s)	776, 1068
RsaI	GTAC	2 cut(s)	47, 89
RsaNI	GTAC	2 cut(s)	46, 88
RseI	CAYNNNNRTG	1 cut(s)	735
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	108, 938, 990
SatI	GCNGC	1 cut(s)	651
Sau96I	GGNCC	4 cut(s)	441, 718, 1018, 1059
SchI	GAGTC	1 cut(s)	593
SduI	GDGCHC	2 cut(s)	23, 408
SfaNI	GCATC	3 cut(s)	112, 529, 880
SfcI	CTRYAG	1 cut(s)	645
Sfr274I	CTCGAG	1 cut(s)	770
SinI	GGWCC	3 cut(s)	441, 718, 1059
SlaI	CTCGAG	1 cut(s)	770
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SpeI	ACTAGT	1 cut(s)	850
Sse9I	AATT	5 cut(s)	180, 694, 881, 935, 1022
SseBI	AGGCCT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	252, 851
SstI	GAGCTC	1 cut(s)	23
StuI	AGGCCT	1 cut(s)	39
StyI	CCWWGG	2 cut(s)	445, 654
TaaI	ACNGT	8 cut(s)	92, 214, 389, 410, 434, 482, 515, 689
TaiI	ACGT	3 cut(s)	33, 430, 490
TaqI	TCGA	6 cut(s)	128, 382, 398, 415, 589, 771
TaqII	GACCGA	3 cut(s)	162, 384, 720
TasI	AATT	5 cut(s)	180, 694, 881, 935, 1022
Tru1I	TTAA	3 cut(s)	108, 938, 990
Tru9I	TTAA	3 cut(s)	108, 938, 990
TscAI	CASTG	4 cut(s)	394, 415, 742, 985
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	173, 255, 947
TspGWI	ACGGA	4 cut(s)	13, 33, 85, 313
TspRI	CASTG	4 cut(s)	394, 415, 742, 985
Van91I	CCANNNNNTGG	1 cut(s)	1056
VpaK11BI	GGWCC	3 cut(s)	441, 718, 1059
XapI	RAATTY	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	770
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	2 cut(s)	252, 851
Zsp2I	ATGCAT	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.