pycom15g16200

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009223
Physical Location & Seq
Forward (+)
11326461 .. 11328959
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g16200.5

Sequence Viewer

Length: 1095 bp
ATGACGATAGACGACGAGAGCTCCGTCTACGTCGGAGGCCTTACGTACGACGCCACCGAGGAAACCGTCCGCAGAGTCTTCGAGCTGTACGGTAACGTCATTGCCGTTAAGATTATCAATGACGCCGCGGCTCGAGGAAAATGCTATGGCTTTGTCACTTTCAGGAATCCTCGGTCAGCAAGTCTCGCCATCAATGAGATGGATGGCAGGACTGTTGATGGAAGAGTGATCAGAGTAAATGAAGTTAGGAGTAGAGGTGAAAGATTGAATTTTGGGAGGGAAAGGGAGAGTTTCCGGCGGAATGCCAAGAGGGGGAGAAATTGGGATAGAGGTAGAGACCATGAGATGGATTTTAGTCGGGATAGGGACCGGTATAAGGATAGGTACAGTGATCAGTCGAGGGAGTGTGACCGTGACAGGTCCCCTGAGGATATTGGTGAAGAAAGGGATAGACGGTATGAGGGTGAACACAATTATAAACATGTAAGGGACCATTTTTTGGATATAGATCTTGATCAGGATAGAGTTGCGGAAGGTAGCGAGCAAGCACAGAGCAGGAACCGCGATCAGGGTTGGGAAAGAGACCGAGCTTTGGTGTCCGATATGGATAGGGATATGGACAAAACCAAAAGCCTTGATAGCACCGGCGACAAGGATGGAGATGACCAGTCAAGGAGATGGAACGGTACAAATACTGTTAACCGACAAATTCGGGACCTCGTATCTCATCCAAGTGATGATTACAATGTTCAGGTAAAAGAACAGCTTGACCAATCCATGCGAAGGGTTGAAGAAATAAAAAATGAGACCATTCAGATGGAGGAGAGCATAGAGGAGAAAGAAAAGCTTATTTTGGATTTACAGAATAAATCTAAGAAATTGGAGGATGCCTTGATAAATGCAAAGAAGAACTCTTCACACAAGAAGATGAAACTAACCAAGCTACATGAATCCTTTATGCAAGTAAAAGATTACACTGAAGAACTTAAAAGCTGTGAACACGAGCTCCAGTTGCTTGTTGATACAGGAATGTTGGAACATAGTAGCGATGAAGTTGGCTTGAGGGATGAAATCTTGACAATTGGCAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

365

Amino Acids

42.65

Weight (kDa)

5.32

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AccB7I CCANNNNNTGG 2 cut(s) 346, 499
AccI GTMKAC 1 cut(s) 27
AccII CGCG 2 cut(s) 128, 564
AciI CCGC 6 cut(s) 70, 126, 128, 298, 530, 562
AcsI RAATTY 2 cut(s) 268, 708
AcuI CTGAAG 1 cut(s) 999
AcyI GRCGYC 2 cut(s) 51, 123
AfaI GTAC 4 cut(s) 47, 89, 386, 688
AfiI CCNNNNNNNGG 7 cut(s) 312, 346, 376, 499, 568, 592, 783
AflIII ACRYGT 1 cut(s) 481
AgeI ACCGGT 1 cut(s) 369
AgsI TTSAA 2 cut(s) 268, 791
AloI GAACNNNNNNTCC 2 cut(s) 990, 1022
AluBI AGCT 8 cut(s) 21, 85, 590, 766, 847, 943, 993, 1006
AluI AGCT 8 cut(s) 21, 85, 590, 766, 847, 943, 993, 1006
Alw21I GWGCWC 2 cut(s) 23, 1008
Alw26I GTCTC 4 cut(s) 188, 330, 576, 800
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 268, 708
AsiGI ACCGGT 1 cut(s) 369
AspS9I GGNCC 4 cut(s) 367, 420, 490, 715
AsuHPI GGTGA 3 cut(s) 269, 449, 476
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 4 cut(s) 367, 420, 490, 715
AxyI CCTNAGG 1 cut(s) 426
BanII GRGCYC 2 cut(s) 23, 1008
BauI CACGAG 1 cut(s) 1001
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 23, 1008
BccI CCATC 8 cut(s) 193, 197, 197, 212, 340, 650, 672, 811
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 123, 157
BclI TGATCA 3 cut(s) 228, 391, 514
BcoDI GTCTC 4 cut(s) 188, 330, 576, 800
BglII AGATCT 1 cut(s) 508
BisI GCNGC 2 cut(s) 126, 129
BlsI GCNGC 2 cut(s) 127, 130
Bme18I GGWCC 4 cut(s) 367, 420, 490, 715
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 4 cut(s) 367, 420, 490, 715
BmiI GGNNCC 5 cut(s) 368, 422, 491, 560, 716
BmsI GCATC 1 cut(s) 877
BpiI GAAGAC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 992
BpuEI CTTGAG 1 cut(s) 1081
BsaAI YACGTR 1 cut(s) 45
BsaBI GATNNNNATC 2 cut(s) 507, 513
BsaHI GRCGYC 2 cut(s) 51, 123
BsaI GGTCTC 3 cut(s) 330, 576, 800
BsaJI CCNNGG 3 cut(s) 57, 126, 170
BsaWI WCCGGW 1 cut(s) 369
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 241, 271, 990, 1020
Bsc4I CCNNNNNNNGG 7 cut(s) 312, 346, 376, 499, 568, 592, 783
Bse118I RCCGGY 2 cut(s) 369, 644
Bse1I ACTGG 2 cut(s) 667, 1009
Bse21I CCTNAGG 1 cut(s) 426
Bse3DI GCAATG 2 cut(s) 99, 1093
Bse8I GATNNNNATC 2 cut(s) 507, 513
BseDI CCNNGG 3 cut(s) 57, 126, 170
BseGI GGATG 5 cut(s) 208, 661, 727, 892, 1072
BseJI GATNNNNATC 2 cut(s) 507, 513
BseLI CCNNNNNNNGG 7 cut(s) 312, 346, 376, 499, 568, 592, 783
BseMI GCAATG 2 cut(s) 99, 1093
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 2 cut(s) 667, 1009
BseRI GAGGAG 2 cut(s) 836, 848
Bsh1236I CGCG 2 cut(s) 128, 564
BshFI GGCC 1 cut(s) 39
BshTI ACCGGT 1 cut(s) 369
BsiHKAI GWGCWC 2 cut(s) 23, 1008
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 3 cut(s) 295, 370, 645
BsiWI CGTACG 1 cut(s) 45
BslFI GGGAC 4 cut(s) 380, 406, 503, 728
BslI CCNNNNNNNGG 7 cut(s) 312, 346, 376, 499, 568, 592, 783
BsmAI GTCTC 4 cut(s) 188, 330, 576, 800
BsmFI GGGAC 4 cut(s) 380, 406, 503, 728
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 1 cut(s) 39
Bso31I GGTCTC 3 cut(s) 330, 576, 800
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 23, 1008
Bsp143I GATC 5 cut(s) 228, 391, 508, 514, 565
BspACI CCGC 6 cut(s) 70, 126, 128, 298, 530, 562
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 418
BspFNI CGCG 2 cut(s) 128, 564
BspLI GGNNCC 5 cut(s) 368, 422, 491, 560, 716
BspTNI GGTCTC 3 cut(s) 330, 576, 800
BsrDI GCAATG 2 cut(s) 99, 1093
BsrFI RCCGGY 2 cut(s) 369, 644
BsrI ACTGG 2 cut(s) 667, 1009
BssAI RCCGGY 2 cut(s) 369, 644
BssECI CCNNGG 3 cut(s) 57, 126, 170
BssMI GATC 5 cut(s) 228, 391, 508, 514, 565
BssNI GRCGYC 2 cut(s) 51, 123
BssSI CACGAG 1 cut(s) 1001
Bst2BI CACGAG 1 cut(s) 1001
Bst4CI ACNGT 8 cut(s) 67, 92, 214, 389, 413, 456, 686, 697
Bst6I CTCTTC 2 cut(s) 217, 919
BstACI GRCGYC 2 cut(s) 51, 123
BstBAI YACGTR 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 542, 546
BstDEI CTNAG 2 cut(s) 426, 873
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 5 cut(s) 208, 661, 727, 892, 1072
BstFNI CGCG 2 cut(s) 128, 564
BstKTI GATC 5 cut(s) 231, 394, 511, 517, 568
BstMAI GTCTC 4 cut(s) 188, 330, 576, 800
BstMBI GATC 5 cut(s) 228, 391, 508, 514, 565
BstMWI GCNNNNNNNGC 4 cut(s) 185, 561, 639, 1012
BstNSI RCATGY 1 cut(s) 485
BstSNI TACGTA 1 cut(s) 45
BstUI CGCG 2 cut(s) 128, 564
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 508
BstXI CCANNNNNNTGG 1 cut(s) 817
BstYI RGATCY 1 cut(s) 508
Bsu36I CCTNAGG 1 cut(s) 426
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 1062
BtsCI GGATG 5 cut(s) 208, 661, 727, 892, 1072
BtsIMutI CAGTG 2 cut(s) 394, 975
Cac8I GCNNGC 2 cut(s) 542, 546
Cfr10I RCCGGY 2 cut(s) 369, 644
Cfr13I GGNCC 4 cut(s) 367, 420, 490, 715
Cfr42I CCGCGG 1 cut(s) 129
CseI GACGC 2 cut(s) 59, 131
Csp6I GTAC 4 cut(s) 46, 88, 385, 687
CspAI ACCGGT 1 cut(s) 369
CviAII CATG 5 cut(s) 341, 482, 778, 947, 1092
CviQI GTAC 4 cut(s) 46, 88, 385, 687
DdeI CTNAG 2 cut(s) 426, 873
DpnI GATC 5 cut(s) 230, 393, 510, 516, 567
DpnII GATC 5 cut(s) 228, 391, 508, 514, 565
Eam1104I CTCTTC 2 cut(s) 217, 919
EarI CTCTTC 2 cut(s) 217, 919
EciI GGCGGA 1 cut(s) 313
Ecl136II GAGCTC 2 cut(s) 21, 1006
Eco105I TACGTA 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 2 cut(s) 23, 1008
Eco31I GGTCTC 3 cut(s) 330, 576, 800
Eco47I GGWCC 4 cut(s) 367, 420, 490, 715
Eco53kI GAGCTC 2 cut(s) 21, 1006
Eco57I CTGAAG 1 cut(s) 999
Eco81I CCTNAGG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 132
EcoICRI GAGCTC 2 cut(s) 21, 1006
EcoO109I RGGNCCY 2 cut(s) 420, 715
EcoT22I ATGCAT 1 cut(s) 1093
EcoT38I GRGCYC 2 cut(s) 23, 1008
FaeI CATG 5 cut(s) 344, 485, 781, 950, 1095
FalI AAGNNNNNCTT 4 cut(s) 750, 782, 831, 863
FaqI GGGAC 4 cut(s) 380, 406, 503, 728
FatI CATG 5 cut(s) 340, 481, 777, 946, 1091
FbaI TGATCA 3 cut(s) 228, 391, 514
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 126, 129
FokI GGATG 5 cut(s) 215, 668, 714, 899, 1079
FriOI GRGCYC 2 cut(s) 23, 1008
Fsp4HI GCNGC 2 cut(s) 126, 129
GluI GCNGC 2 cut(s) 126, 129
GsuI CTGGAG 1 cut(s) 992
HaeIII GGCC 1 cut(s) 39
HapII CCGG 3 cut(s) 295, 370, 645
HgaI GACGC 2 cut(s) 59, 131
Hin1I GRCGYC 2 cut(s) 51, 123
Hin1II CATG 5 cut(s) 344, 485, 781, 950, 1095
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 3 cut(s) 75, 166, 950
HpaI GTTAAC 1 cut(s) 700
HpaII CCGG 3 cut(s) 295, 370, 645
HphI GGTGA 3 cut(s) 269, 449, 476
Hpy166II GTNNAC 4 cut(s) 28, 467, 700, 998
Hpy188I TCNGA 4 cut(s) 35, 233, 601, 816
Hpy188III TCNNGA 6 cut(s) 163, 359, 512, 518, 713, 1075
Hpy8I GTNNAC 4 cut(s) 28, 467, 700, 998
Hpy99I CGWCG 3 cut(s) 17, 35, 53
HpyAV CCTTC 2 cut(s) 527, 777
HpyCH4III ACNGT 8 cut(s) 67, 92, 214, 389, 413, 456, 686, 697
HpyCH4IV ACGT 3 cut(s) 30, 44, 96
HpyCH4V TGCA 3 cut(s) 902, 961, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 561, 639, 1012
HpyF3I CTNAG 2 cut(s) 426, 873
HpySE526I ACGT 3 cut(s) 30, 44, 96
Hsp92I GRCGYC 2 cut(s) 51, 123
Hsp92II CATG 5 cut(s) 344, 485, 781, 950, 1095
Ksp22I TGATCA 3 cut(s) 228, 391, 514
KspAI GTTAAC 1 cut(s) 700
KspI CCGCGG 1 cut(s) 129
Kzo9I GATC 5 cut(s) 228, 391, 508, 514, 565
LmnI GCTCC 2 cut(s) 26, 1011
LweI GCATC 1 cut(s) 877
MaeII ACGT 3 cut(s) 30, 44, 96
MaeIII GTNAC 4 cut(s) 92, 154, 407, 413
MalI GATC 5 cut(s) 230, 393, 510, 516, 567
MboI GATC 5 cut(s) 228, 391, 508, 514, 565
MboII GAAGA 8 cut(s) 70, 234, 452, 803, 906, 919, 937, 992
MfeI CAATTG 1 cut(s) 1080
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 2 cut(s) 23, 1008
MluCI AATT 6 cut(s) 268, 319, 472, 708, 878, 1080
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 2 cut(s) 13, 1014
Mph1103I ATGCAT 1 cut(s) 1093
MseI TTAA 3 cut(s) 108, 699, 987
MslI CAYNNNNRTG 2 cut(s) 732, 815
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 3 cut(s) 295, 370, 645
MunI CAATTG 1 cut(s) 1080
Mva1269I GAATGC 1 cut(s) 307
MvnI CGCG 2 cut(s) 128, 564
MwoI GCNNNNNNNGC 4 cut(s) 185, 561, 639, 1012
NdeII GATC 5 cut(s) 228, 391, 508, 514, 565
NlaIII CATG 5 cut(s) 344, 485, 781, 950, 1095
NlaIV GGNNCC 5 cut(s) 368, 422, 491, 560, 716
NmuCI GTSAC 3 cut(s) 154, 407, 413
NsiI ATGCAT 1 cut(s) 1093
NspI RCATGY 1 cut(s) 485
PaeR7I CTCGAG 1 cut(s) 132
PceI AGGCCT 1 cut(s) 39
PciI ACATGT 1 cut(s) 481
PcsI WCGNNNNNNNCGW 3 cut(s) 21, 54, 102
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 2 cut(s) 166, 950
Pfl23II CGTACG 1 cut(s) 45
PflMI CCANNNNNTGG 2 cut(s) 346, 499
PinAI ACCGGT 1 cut(s) 369
PkrI GCNGC 2 cut(s) 127, 130
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Ppu21I YACGTR 1 cut(s) 45
PpuMI RGGWCCY 2 cut(s) 420, 715
PscI ACATGT 1 cut(s) 481
PsiI TTATAA 1 cut(s) 477
Psp124BI GAGCTC 2 cut(s) 23, 1008
Psp5II RGGWCCY 2 cut(s) 420, 715
PspLI CGTACG 1 cut(s) 45
PspN4I GGNNCC 5 cut(s) 368, 422, 491, 560, 716
PspPI GGNCC 4 cut(s) 367, 420, 490, 715
PspPPI RGGWCCY 2 cut(s) 420, 715
PspXI VCTCGAGB 1 cut(s) 132
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 4 cut(s) 47, 89, 386, 688
RsaNI GTAC 4 cut(s) 46, 88, 385, 687
RseI CAYNNNNRTG 2 cut(s) 732, 815
SacI GAGCTC 2 cut(s) 23, 1008
SacII CCGCGG 1 cut(s) 129
SaqAI TTAA 3 cut(s) 108, 699, 987
SatI GCNGC 2 cut(s) 126, 129
Sau3AI GATC 5 cut(s) 228, 391, 508, 514, 565
Sau96I GGNCC 4 cut(s) 367, 420, 490, 715
SchI GAGTC 1 cut(s) 84
SduI GDGCHC 2 cut(s) 23, 1008
SfaNI GCATC 1 cut(s) 877
Sfr274I CTCGAG 1 cut(s) 132
Sfr303I CCGCGG 1 cut(s) 129
SgrAI CRCCGGYG 1 cut(s) 644
SgrBI CCGCGG 1 cut(s) 129
SinI GGWCC 4 cut(s) 367, 420, 490, 715
SlaI CTCGAG 1 cut(s) 132
SmiMI CAYNNNNRTG 2 cut(s) 732, 815
SmlI CTYRAG 2 cut(s) 132, 1060
SmoI CTYRAG 2 cut(s) 132, 1060
SnaBI TACGTA 1 cut(s) 45
Sse9I AATT 6 cut(s) 268, 319, 472, 708, 878, 1080
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 6 cut(s) 70, 126, 128, 298, 530, 562
SstI GAGCTC 2 cut(s) 23, 1008
StuI AGGCCT 1 cut(s) 39
TaaI ACNGT 8 cut(s) 67, 92, 214, 389, 413, 456, 686, 697
TaiI ACGT 3 cut(s) 33, 47, 99
TaqI TCGA 3 cut(s) 81, 133, 398
TaqII GACCGA 2 cut(s) 162, 600
TasI AATT 6 cut(s) 268, 319, 472, 708, 878, 1080
TauI GCSGC 2 cut(s) 128, 131
TfiI GAWTC 2 cut(s) 166, 950
Tru1I TTAA 3 cut(s) 108, 699, 987
Tru9I TTAA 3 cut(s) 108, 699, 987
TscAI CASTG 2 cut(s) 394, 982
TseFI GTSAC 3 cut(s) 154, 407, 413
Tsp45I GTSAC 3 cut(s) 154, 407, 413
TspDTI ATGAA 5 cut(s) 255, 944, 963, 1065, 1083
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 2 cut(s) 394, 982
Van91I CCANNNNNTGG 2 cut(s) 346, 499
VpaK11BI GGWCC 4 cut(s) 367, 420, 490, 715
XapI RAATTY 2 cut(s) 268, 708
XceI RCATGY 1 cut(s) 485
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XhoI CTCGAG 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.