FvH4_1g04100

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009223
Physical Location & Seq
Forward (+)
2166929 .. 2168503
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04100.t1

Sequence Viewer

Length: 576 bp
ATGACGAGAGCTCCGTCCACCGAGGACAGTGTTCGCCGAGTCTTCGTCGCCGTTAAGTCATGGGTCTGGTCGAGGGAGCAGGAAAGAGATGGGGGATACGAGCGTGGAGTTGGTGATCAGGAGATAATGAGTGAGCATTCCTCAGATAGAGATCGTGAGAGGGGGAAGGATTTGGAAGATATTGAGCAAGGAAGCAGCAGGTGCCATGAGCGGGGTTGGGGAAAAAGAAATCGAACTGTGGAATCAGATAGAGAGGGGGAGATGGACAGAACGGAGCTTTGGATGACATTGTTGAAAAGGATAGAGATAAACTTTCGAGGAGGTGGAACAGTCGACCGAAATGGTAGGGAGCTTTTATCCCATTCAAGTGATGATTTTAATGATCAGGCAAGTACAACAATTTCAATGATCGACATCATTCAAAAGATGTCGATTGACGACGAGAGCTCCGTTTACGTCGGCAGCCTTCCCTACGACGCCACTGAGGACAGTGTTCGCGTCGATCTGTACGGCGCCGTCATCGCCGTTAAGGTTTATACACAATTCTTACTAGTTATTGGAACTGTGTATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

192

Amino Acids

21.84

Weight (kDa)

4.89

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 189
Acc36I ACCTGC 1 cut(s) 189
AccB1I GGYRCC 2 cut(s) 201, 512
AccBSI CCGCTC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 333
AccII CGCG 1 cut(s) 498
AciI CCGC 1 cut(s) 211
AcyI GRCGYC 2 cut(s) 477, 513
AfaI GTAC 2 cut(s) 394, 509
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 4 cut(s) 295, 366, 405, 422
AhlI ACTAGT 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 262, 294
AluBI AGCT 4 cut(s) 11, 277, 352, 447
AluI AGCT 4 cut(s) 11, 277, 352, 447
Alw21I GWGCWC 2 cut(s) 13, 449
ApeKI GCWGC 2 cut(s) 195, 462
AspLEI GCGC 1 cut(s) 515
AsuHPI GGTGA 1 cut(s) 125
BaeI ACNNNNGTAYC 2 cut(s) 88, 121
BanI GGYRCC 2 cut(s) 201, 512
BanII GRGCYC 2 cut(s) 13, 449
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 2 cut(s) 13, 449
BbvI GCAGC 2 cut(s) 207, 474
BccI CCATC 2 cut(s) 83, 256
BceAI ACGGC 4 cut(s) 35, 500, 509, 526
BciVI GTATCC 1 cut(s) 89
BclI TGATCA 2 cut(s) 115, 382
BcuI ACTAGT 1 cut(s) 550
BfaI CTAG 1 cut(s) 551
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 189
BfuI GTATCC 1 cut(s) 89
BisI GCNGC 2 cut(s) 196, 463
BlsI GCNGC 2 cut(s) 197, 464
BmiI GGNNCC 2 cut(s) 203, 514
BpiI GAAGAC 1 cut(s) 34
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BsaBI GATNNNNATC 2 cut(s) 150, 413
BsaHI GRCGYC 2 cut(s) 477, 513
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 3 cut(s) 25, 431, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse8I GATNNNNATC 2 cut(s) 150, 413
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 288
BseJI GATNNNNATC 2 cut(s) 150, 413
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 156, 474
BseRI GAGGAG 1 cut(s) 333
BseXI GCAGC 2 cut(s) 207, 474
Bsh1236I CGCG 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 337
BshNI GGYRCC 2 cut(s) 201, 512
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 2 cut(s) 13, 449
BslI CCNNNNNNNGG 1 cut(s) 211
BsmI GAATGC 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 13, 449
Bsp143I GATC 5 cut(s) 115, 151, 382, 408, 502
BspACI CCGC 1 cut(s) 211
BspCNI CTCAG 2 cut(s) 155, 475
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 2 cut(s) 203, 514
BspMI ACCTGC 1 cut(s) 189
BspT107I GGYRCC 2 cut(s) 201, 512
BsrBI CCGCTC 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 5 cut(s) 115, 151, 382, 408, 502
BssNI GRCGYC 2 cut(s) 477, 513
Bst4CI ACNGT 5 cut(s) 29, 238, 331, 491, 565
BstACI GRCGYC 2 cut(s) 477, 513
BstAPI GCANNNNNTGC 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 142, 483
BstF5I GGATG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 498
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 5 cut(s) 118, 154, 385, 411, 505
BstMBI GATC 5 cut(s) 115, 151, 382, 408, 502
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 2 cut(s) 201, 521
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 2 cut(s) 207, 474
BstV2I GAAGAC 1 cut(s) 34
BsuI GTATCC 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 505
BtsCI GGATG 1 cut(s) 288
BtsIMutI CAGTG 3 cut(s) 34, 480, 496
BveI ACCTGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 515
CseI GACGC 2 cut(s) 485, 487
Csp6I GTAC 2 cut(s) 393, 508
CviAII CATG 2 cut(s) 60, 206
CviJI RGCY 5 cut(s) 11, 277, 352, 447, 465
CviKI_1 RGCY 5 cut(s) 11, 277, 352, 447, 465
CviQI GTAC 2 cut(s) 393, 508
DdeI CTNAG 2 cut(s) 142, 483
DinI GGCGCC 1 cut(s) 514
DpnI GATC 5 cut(s) 117, 153, 384, 410, 504
DpnII GATC 5 cut(s) 115, 151, 382, 408, 502
Ecl136II GAGCTC 2 cut(s) 11, 447
Eco24I GRGCYC 2 cut(s) 13, 449
Eco53kI GAGCTC 2 cut(s) 11, 447
EcoICRI GAGCTC 2 cut(s) 11, 447
EcoT38I GRGCYC 2 cut(s) 13, 449
EgeI GGCGCC 1 cut(s) 514
EheI GGCGCC 1 cut(s) 514
FaeI CATG 2 cut(s) 63, 209
FaiI YATR 4 cut(s) 61, 207, 537, 570
FatI CATG 2 cut(s) 59, 205
FauI CCCGC 1 cut(s) 204
FbaI TGATCA 2 cut(s) 115, 382
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 196, 463
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 2 cut(s) 13, 449
Fsp4HI GCNGC 2 cut(s) 196, 463
FspBI CTAG 1 cut(s) 551
GlaI GCGC 1 cut(s) 514
GluI GCNGC 2 cut(s) 196, 463
HaeII RGCGCY 1 cut(s) 516
HgaI GACGC 2 cut(s) 485, 487
HhaI GCGC 1 cut(s) 515
Hin1I GRCGYC 2 cut(s) 477, 513
Hin1II CATG 2 cut(s) 63, 209
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 2 cut(s) 39, 242
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 18, 334, 454
Hpy188I TCNGA 2 cut(s) 145, 247
Hpy188III TCNNGA 2 cut(s) 119, 155
Hpy8I GTNNAC 3 cut(s) 18, 334, 454
Hpy99I CGWCG 5 cut(s) 50, 443, 461, 479, 503
HpyAV CCTTC 2 cut(s) 160, 476
HpyCH4III ACNGT 5 cut(s) 29, 238, 331, 491, 565
HpyCH4IV ACGT 1 cut(s) 456
HpyF10VI GCNNNNNNNGC 2 cut(s) 201, 521
HpyF3I CTNAG 2 cut(s) 142, 483
HpySE526I ACGT 1 cut(s) 456
Hsp92I GRCGYC 2 cut(s) 477, 513
Hsp92II CATG 2 cut(s) 63, 209
HspAI GCGC 1 cut(s) 513
KasI GGCGCC 1 cut(s) 512
Ksp22I TGATCA 2 cut(s) 115, 382
Kzo9I GATC 5 cut(s) 115, 151, 382, 408, 502
LmnI GCTCC 5 cut(s) 16, 76, 274, 349, 452
LpnPI CCDG 5 cut(s) 52, 65, 104, 184, 371
Lsp1109I GCAGC 2 cut(s) 207, 474
MaeI CTAG 1 cut(s) 551
MaeII ACGT 1 cut(s) 456
MalI GATC 5 cut(s) 117, 153, 384, 410, 504
MbiI CCGCTC 1 cut(s) 211
MboI GATC 5 cut(s) 115, 151, 382, 408, 502
MboII GAAGA 2 cut(s) 34, 188
MhlI GDGCHC 2 cut(s) 13, 449
MluCI AATT 2 cut(s) 399, 542
Mly113I GGCGCC 1 cut(s) 513
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 8 cut(s) 16, 66, 151, 153, 247, 311, 314, 478
MseI TTAA 3 cut(s) 54, 378, 528
MslI CAYNNNNRTG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 136
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 201, 521
NarI GGCGCC 1 cut(s) 513
NdeII GATC 5 cut(s) 115, 151, 382, 408, 502
NlaIII CATG 2 cut(s) 63, 209
NlaIV GGNNCC 2 cut(s) 203, 514
NmeAIII GCCGAG 1 cut(s) 62
PaqCI CACCTGC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 447
PctI GAATGC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 197, 464
PleI GAGTC 1 cut(s) 47
PluTI GGCGCC 1 cut(s) 516
PpsI GAGTC 1 cut(s) 47
Psp124BI GAGCTC 2 cut(s) 13, 449
PspN4I GGNNCC 2 cut(s) 203, 514
RsaI GTAC 2 cut(s) 394, 509
RsaNI GTAC 2 cut(s) 393, 508
RseI CAYNNNNRTG 1 cut(s) 366
SacI GAGCTC 2 cut(s) 13, 449
SalI GTCGAC 1 cut(s) 332
SaqAI TTAA 3 cut(s) 54, 378, 528
SatI GCNGC 2 cut(s) 196, 463
Sau3AI GATC 5 cut(s) 115, 151, 382, 408, 502
SchI GAGTC 1 cut(s) 48
SduI GDGCHC 2 cut(s) 13, 449
SetI ASST 8 cut(s) 13, 203, 279, 325, 354, 449, 459, 534
SfoI GGCGCC 1 cut(s) 514
SmiMI CAYNNNNRTG 1 cut(s) 366
SpeI ACTAGT 1 cut(s) 550
Sse9I AATT 2 cut(s) 399, 542
SsiI CCGC 1 cut(s) 211
SspDI GGCGCC 1 cut(s) 512
SspMI CTAG 1 cut(s) 551
SstI GAGCTC 2 cut(s) 13, 449
TaaI ACNGT 5 cut(s) 29, 238, 331, 491, 565
TaiI ACGT 1 cut(s) 459
TaqI TCGA 7 cut(s) 71, 232, 316, 333, 411, 431, 501
TaqII GACCGA 1 cut(s) 351
TasI AATT 2 cut(s) 399, 542
TatI WGTACW 1 cut(s) 392
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 3 cut(s) 54, 378, 528
Tru9I TTAA 3 cut(s) 54, 378, 528
TscAI CASTG 3 cut(s) 34, 487, 496
TseI GCWGC 2 cut(s) 195, 462
TspGWI ACGGA 2 cut(s) 287, 439
TspRI CASTG 3 cut(s) 34, 487, 496
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.