Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009480

Physical Location & Seq

Genomic Coordinates Forward (+)

6782511 .. 6786847

Gene Structure 4337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCTACTTCCTTCTTCCGGCGACTCGCTAGGTCAGCTCCGATTACATTCCCTGTCGCATTTGGATCTCAAAGCAAATCTGGTTCTGGCGCTTTCCGGTTCTCCACCGGTGCAATCGCGGCACTTTCCGGTGGATTCTCCTATTACTACTTGACATCCGGCAACAATCTGGTTTATCTGGATCAAGCTAAGGAAGAGACAGGACCAAAAACCGCTCTAAACCCTGATAAATGGCTCGAGTTCAAGCTTCAAGACACTGCTAGAGTTAGCCACAACACTCAGTTGTTCAGGTTCTCATTTGACCCCTCAGCTGAGTTGGGTCTACATGTTGCTTCTTGTCTCCTGACAAGGGCTCCTTTAGGCTATAATGCTGAAGGGAAAACGAAATATGTCATTAGACCTTACACTCCTATATCAGATCCAGAGGCTAAGGGCTATTTTGATTTACTGATTAAGGTATATCCTGACGGAAAAATGAGTCAGCATTTTGCCAGCTTAAAACCGGGGGATGTGTTGGAAGTAAAAGGACCCGTTGAAAAGTTCAAATACTCGCCGAATATGAAGAAACATATTGGCATGATTGCCGGTGGAAGTGGGATTACTCCAATGCTTCAGGTGATTGATGCCATTGTGAAGAATCCTGAGGACAACACGCAGATATCATTGCTTTATGCCAATGTGTCACCAGATGATATACTCCTGAAGCAGAAGCTTGATGTACTTCAGGCTAACCACCCAAATTTGAAGATATTCTATACTGTTGACAACCCTACTAAAAACTGGAAAGGAGGAGTAGGTTACATTTCAAAGGATATGGCTCTGAAAGGCTTACCTCTTCCTACCGACGATACTCTTATCCTTGTATGCGGTCCTCCTGGGATGATGGAGCATATATCTGGAGGCAAAGCTCCAGACTGGTCACAAGGAGAGGTCAAGGGGATTCTCAAGGAACTCGGATACACAGAGGAAATGGTGTTCAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

328

Amino Acids

35.99

Weight (kDa)

8.76

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	81 - 183	2.4e-26	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	193 - 298	2.5e-30	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20080
fragaria_vesca	FvH4_1g03580
malus_domestica	MD00G1107200.v1.1 MD02G1035100.v1.1
prunus_persica	Prupe.7G239800_v2.0.a1
pyrus_communis	pycom02g02870 pycom02g02890 pycom02g02910 pycom15g15760 pycom810g00010 pycom810g00030
rosa_chinensis	RchiOBHm_Chr2g0089111
rosa_laevigata	RLG00000015992
rosa_multiflora	Rmu_sc0003668.1_g000001 Rmu_sc0005510.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152240
rosa_rugosa	Rorug01G0487500
rosa_samantha	Rh2AG043000 Rh2BG041500 Rh2CG043100 Rh2DG042100
rosa_wichuraiana	Rw2G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	322
AccII	CGCG	1 cut(s)	119
AciI	CCGC	3 cut(s)	119, 213, 867
AclWI	GGATC	3 cut(s)	73, 189, 413
AcsI	RAATTY	2 cut(s)	739, 980
AcuI	CTGAAG	4 cut(s)	393, 596, 707, 722
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	2 cut(s)	18, 349
AflIII	ACRYGT	1 cut(s)	325
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	7 cut(s)	244, 251, 536, 544, 745, 807, 979
AjnI	CCWGG	1 cut(s)	874
AloI	GAACNNNNNNTCC	1 cut(s)	959
AluBI	AGCT	7 cut(s)	38, 188, 247, 311, 495, 712, 908
AluI	AGCT	7 cut(s)	38, 188, 247, 311, 495, 712, 908
Alw26I	GTCTC	2 cut(s)	191, 344
AlwI	GGATC	3 cut(s)	73, 189, 413
Ama87I	CYCGRG	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	739, 980
AsiGI	ACCGGT	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	203, 527, 869
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	628, 675
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	3 cut(s)	203, 527, 869
AxyI	CCTNAGG	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	355
BarI	GAAGNNNNNNTAC	2 cut(s)	583, 615
BbvCI	CCTCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	877
BciT130I	CCWGG	1 cut(s)	876
BciVI	GTATCC	1 cut(s)	950
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	2 cut(s)	191, 344
BfaI	CTAG	2 cut(s)	30, 261
BfoI	RGCGCY	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	950
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	504, 876
Bme18I	GGWCC	3 cut(s)	203, 527, 869
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	203, 527, 869
BmiI	GGNNCC	2 cut(s)	354, 529
BmrFI	CCNGG	2 cut(s)	504, 876
BmsI	GCATC	1 cut(s)	613
BpmI	CTGGAG	2 cut(s)	894, 918
Bpu10I	CCTNAGC	3 cut(s)	189, 307, 429
BpuEI	CTTGAG	1 cut(s)	929
BpuMI	CCSGG	1 cut(s)	504
BsaJI	CCNNGG	2 cut(s)	503, 875
BsaWI	WCCGGW	3 cut(s)	96, 107, 128
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 349
Bse118I	RCCGGY	2 cut(s)	107, 584
Bse1I	ACTGG	2 cut(s)	785, 920
Bse21I	CCTNAGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	876
BseDI	CCNNGG	2 cut(s)	503, 875
BseGI	GGATG	3 cut(s)	155, 514, 885
BseLI	CCNNNNNNNGG	2 cut(s)	18, 349
BseMI	GCAATG	1 cut(s)	662
BseMII	CTCAG	4 cut(s)	293, 303, 321, 633
BseNI	ACTGG	2 cut(s)	785, 920
BseRI	GAGGAG	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	7 cut(s)	19, 97, 108, 129, 159, 503, 585
BslI	CCNNNNNNNGG	2 cut(s)	18, 349
BsmAI	GTCTC	2 cut(s)	191, 344
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	65, 181, 418
BspACI	CCGC	3 cut(s)	119, 213, 867
BspCNI	CTCAG	4 cut(s)	292, 304, 320, 634
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	354, 529
BspPI	GGATC	3 cut(s)	73, 189, 413
BsrBI	CCGCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	662
BsrFI	RCCGGY	2 cut(s)	107, 584
BsrI	ACTGG	2 cut(s)	785, 920
BssAI	RCCGGY	2 cut(s)	107, 584
BssECI	CCNNGG	2 cut(s)	503, 875
BssMI	GATC	3 cut(s)	65, 181, 418
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	1 cut(s)	760
Bst6I	CTCTTC	2 cut(s)	189, 840
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	6 cut(s)	189, 279, 307, 312, 429, 642
BstF5I	GGATG	3 cut(s)	155, 514, 885
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	68, 184, 421
BstMAI	GTCTC	2 cut(s)	191, 344
BstMBI	GATC	3 cut(s)	65, 181, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 119
BstNI	CCWGG	1 cut(s)	876
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	502, 874
BstUI	CGCG	1 cut(s)	119
BstX2I	RGATCY	2 cut(s)	65, 418
BstYI	RGATCY	2 cut(s)	65, 418
Bsu36I	CCTNAGG	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	950
BtsCI	GGATG	3 cut(s)	155, 514, 885
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	493
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	2 cut(s)	107, 584
Cfr13I	GGNCC	3 cut(s)	203, 527, 869
Csp6I	GTAC	1 cut(s)	719
CspAI	ACCGGT	1 cut(s)	107
CviAII	CATG	2 cut(s)	326, 577
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	6 cut(s)	189, 279, 307, 312, 429, 642
DpnI	GATC	3 cut(s)	67, 183, 420
DpnII	GATC	3 cut(s)	65, 181, 418
Eam1104I	CTCTTC	2 cut(s)	189, 840
EarI	CTCTTC	2 cut(s)	189, 840
Eco24I	GRGCYC	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	660
Eco47I	GGWCC	3 cut(s)	203, 527, 869
Eco57I	CTGAAG	4 cut(s)	393, 596, 707, 722
Eco81I	CCTNAGG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	874
EcoRV	GATATC	1 cut(s)	660
EcoT38I	GRGCYC	1 cut(s)	355
FaeI	CATG	2 cut(s)	329, 580
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
FatI	CATG	2 cut(s)	325, 576
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	142, 521, 892
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	2 cut(s)	30, 261
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	120
GsuI	CTGGAG	2 cut(s)	894, 918
HaeII	RGCGCY	1 cut(s)	93
HapII	CCGG	7 cut(s)	19, 97, 108, 129, 159, 503, 585
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	329, 580
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	2 cut(s)	245, 710
HinfI	GANTC	5 cut(s)	24, 135, 478, 637, 940
HpaII	CCGG	7 cut(s)	19, 97, 108, 129, 159, 503, 585
HphI	GGTGA	2 cut(s)	628, 675
Hpy166II	GTNNAC	2 cut(s)	323, 763
Hpy188I	TCNGA	5 cut(s)	42, 418, 822, 956, 986
Hpy188III	TCNNGA	9 cut(s)	179, 251, 343, 422, 464, 641, 700, 897, 911
Hpy8I	GTNNAC	2 cut(s)	323, 763
Hpy99I	CGWCG	1 cut(s)	848
HpyAV	CCTTC	2 cut(s)	22, 368
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 119
HpyF3I	CTNAG	6 cut(s)	189, 279, 307, 312, 429, 642
Hsp92II	CATG	2 cut(s)	329, 580
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	65, 181, 418
LmnI	GCTCC	4 cut(s)	43, 358, 886, 913
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	2 cut(s)	30, 261
MaeIII	GTNAC	3 cut(s)	681, 797, 918
MalI	GATC	3 cut(s)	67, 183, 420
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	3 cut(s)	65, 181, 418
MboII	GAAGA	6 cut(s)	7, 206, 574, 646, 757, 827
MflI	RGATCY	2 cut(s)	65, 418
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	2 cut(s)	739, 980
MlyI	GAGTC	2 cut(s)	18, 487
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	9 cut(s)	316, 418, 637, 782, 843, 882, 893, 922, 958
MroXI	GAANNNNTTC	1 cut(s)	749
MseI	TTAA	2 cut(s)	453, 497
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	7 cut(s)	19, 97, 108, 129, 159, 503, 585
MspR9I	CCNGG	2 cut(s)	504, 876
MvaI	CCWGG	1 cut(s)	876
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	35, 119
NciI	CCSGG	1 cut(s)	504
NdeII	GATC	3 cut(s)	65, 181, 418
NlaIII	CATG	2 cut(s)	329, 580
NlaIV	GGNNCC	2 cut(s)	354, 529
NmuCI	GTSAC	2 cut(s)	681, 918
NspI	RCATGY	1 cut(s)	329
PaeR7I	CTCGAG	1 cut(s)	236
PciI	ACATGT	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	3 cut(s)	135, 637, 940
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	18, 486
PpsI	GAGTC	2 cut(s)	18, 486
PpuMI	RGGWCCY	1 cut(s)	527
PscI	ACATGT	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	874
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	2 cut(s)	354, 529
PspPI	GGNCC	3 cut(s)	203, 527, 869
PspPPI	RGGWCCY	1 cut(s)	527
PspXI	VCTCGAGB	1 cut(s)	236
PsuI	RGATCY	2 cut(s)	65, 418
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
SaqAI	TTAA	2 cut(s)	453, 497
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	3 cut(s)	65, 181, 418
Sau96I	GGNCC	3 cut(s)	203, 527, 869
SchI	GAGTC	2 cut(s)	18, 487
ScrFI	CCNGG	2 cut(s)	504, 876
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	1 cut(s)	613
Sfr274I	CTCGAG	1 cut(s)	236
SgrAI	CRCCGGYG	1 cut(s)	107
SinI	GGWCC	3 cut(s)	203, 527, 869
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	236, 944
SmoI	CTYRAG	2 cut(s)	236, 944
Sse9I	AATT	2 cut(s)	739, 980
SsiI	CCGC	3 cut(s)	119, 213, 867
SspMI	CTAG	2 cut(s)	30, 261
StyD4I	CCNGG	2 cut(s)	502, 874
TaaI	ACNGT	1 cut(s)	760
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	739, 980
TatI	WGTACW	1 cut(s)	718
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	3 cut(s)	135, 637, 940
Tru1I	TTAA	2 cut(s)	453, 497
Tru9I	TTAA	2 cut(s)	453, 497
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	681, 918
Tsp45I	GTSAC	2 cut(s)	681, 918
TspDTI	ATGAA	1 cut(s)	575
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	3 cut(s)	203, 527, 869
XapI	RAATTY	2 cut(s)	739, 980
XceI	RCATGY	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	2 cut(s)	30, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.