pycom02g02870

belongs to the flavoprotein pyridine nucleotide cytochrome reductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
1813778 .. 1823574
9797 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02870.2

Sequence Viewer

Length: 1224 bp
ATGACTCATAAAACACATGGGAAATTGAGATCAAGGCCCATATTTGAATTCCCGGCCCACCCAGTGAAAAGTATCCGATCCATAAATTGGGCCTTGTGGCTATTGGGCCCAGTAATCACTGACTTCCACGCCAGAAACGTTAAGACTTTTCCCACGAAAGTGGAAACTGGAAACGTCGCCAAGAGTAGTGAGAAATCAGCAAGGCAAGTGGCCAGCAGCATCTGTGCTTTGCTTCTTCCAATGGCTACCTTCTTCCAAAGGCTCGCCAAGGCGGCGCCGATCGCCTTCAACAGCTCGTTTCGAGGTCAATCGAAGTCCAGCTTCCACATTCCCTTCGGAGCAGTCGCAGCCGTCTCCGGCGGAATCTCCTATCTCTGCTACCATTCCTCGCCGGATTTGGTCTATCTAGATGAAATCAAAGAACAGACTGGCCCAAAAGTTGCACTTAATCCAGACAAATGGGTTGAATTTAAGTTGCAAGATACTGCAAGGGTTAGCCATAATACACAATTATTCAGGTTTACATTTGATCCGAATGCCAAGTCGGGTATATATGTTGCTTCATATCTCCTTACGAGGGCTCCATTAGAACAAGATGCTGAAGGGAAACCAAAATATGTCATACGCCCGTATACTCCTATTTCAGATCCAGATGCCAAGGGATACTTTGACTTGTTAATTAAGGTGTATCCACAAGGAAAAATGAGCCAGCATTTCGCAAGTTTAAAACCAGGCGACATAGTTGAAATGAAGGGGCCCATTGAAAAACTCAGATATACTCCCAACATGAAGAAACATATAGGCATGATTGCCGGTGGTACAGGTATTACTCCAATGCTTCAGGTTATTGAGGCCATACTGAAAAATCCTGACGACACAACTCAGGTGTCACTTCTTTATGCGAATGTCTCCCCTGATGACATACTGCTTAAACAGAAACTCGACATACTTGCAGCTAGCCACCCAAATTTAAAGGTATTTTACACTGTAGATAATCCAACAAAGAGTTGGAATGGGGGAAAAGGTTACATATCAAAGGATATGGCAGTTAAAGGCTTACCTGCTCCTGGTGAAGATACTCTCATCCTGGTATGTGGTCCTCCTGGGATGATGAAACATATATCTGGTGACAAGGCTCAAGACCGATCGCAAGGAGAGCTCACTGGCATACTAAAAGAACTCGGGTACACTGAAGAAATGGTATTTTTGATTCAGCAAGGATGA

Protein Analysis

408

Amino Acids

44.88

Weight (kDa)

9.29

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1069
AccB1I GGYRCC 1 cut(s) 274
AccB7I CCANNNNNTGG 1 cut(s) 87
AccI GTMKAC 1 cut(s) 632
AciI CCGC 2 cut(s) 272, 360
AclI AACGTT 1 cut(s) 138
AclWI GGATC 3 cut(s) 72, 524, 641
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 3 cut(s) 47, 467, 967
AcuI CTGAAG 3 cut(s) 621, 824, 1212
AcyI GRCGYC 1 cut(s) 275
AdeI CACNNNGTG 1 cut(s) 64
AfaI GTAC 2 cut(s) 820, 1187
AfiI CCNNNNNNNGG 3 cut(s) 87, 577, 1067
AgsI TTSAA 5 cut(s) 47, 289, 467, 746, 764
AjnI CCWGG 4 cut(s) 730, 1066, 1086, 1102
AleI CACNNNNGTG 1 cut(s) 158
AluBI AGCT 4 cut(s) 294, 321, 956, 1159
AluI AGCT 4 cut(s) 294, 321, 956, 1159
Alw21I GWGCWC 1 cut(s) 1161
Alw26I GTCTC 2 cut(s) 358, 913
AlwI GGATC 3 cut(s) 72, 524, 641
AlwNI CAGNNNCTG 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 1181
AoxI GGCC 8 cut(s) 35, 54, 90, 106, 210, 430, 755, 852
ApaI GGGCCC 2 cut(s) 110, 759
ApeKI GCWGC 3 cut(s) 216, 347, 953
ApoI RAATTY 3 cut(s) 47, 467, 967
ArsI GACNNNNNNTTYG 2 cut(s) 527, 559
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 9 cut(s) 36, 55, 90, 106, 107, 431, 755, 756, 1097
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 1082, 1139
AsuNHI GCTAGC 1 cut(s) 956
AvaI CYCGRG 1 cut(s) 1181
AvaII GGWCC 1 cut(s) 1097
BaeGI GKGCMC 2 cut(s) 110, 759
BalI TGGCCA 1 cut(s) 212
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 4 cut(s) 110, 583, 759, 1161
Bbv12I GWGCWC 1 cut(s) 1161
BbvI GCAGC 3 cut(s) 228, 359, 965
BceAI ACGGC 1 cut(s) 335
BcgI CGANNNNNNTGC 2 cut(s) 932, 966
BciT130I CCWGG 4 cut(s) 732, 1068, 1088, 1104
BciVI GTATCC 3 cut(s) 83, 656, 699
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 358, 913
BfaI CTAG 2 cut(s) 407, 957
BfmI CTRYAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 278
BfuAI ACCTGC 1 cut(s) 1069
BfuI GTATCC 3 cut(s) 83, 656, 699
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 4 cut(s) 217, 273, 348, 954
BlsI GCNGC 4 cut(s) 218, 274, 349, 955
Bme1390I CCNGG 5 cut(s) 53, 732, 1068, 1088, 1104
Bme18I GGWCC 1 cut(s) 1097
BmeT110I CYCGRG 1 cut(s) 1181
BmgT120I GGNCC 9 cut(s) 36, 55, 90, 106, 107, 431, 755, 756, 1097
BmiI GGNNCC 5 cut(s) 108, 276, 582, 756, 757
BmrFI CCNGG 5 cut(s) 53, 732, 1068, 1088, 1104
BmrI ACTGGG 2 cut(s) 56, 104
BmsI GCATC 3 cut(s) 228, 586, 643
BmtI GCTAGC 1 cut(s) 960
BmuI ACTGGG 2 cut(s) 56, 104
BpuEI CTTGAG 1 cut(s) 1122
BpuMI CCSGG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 3 cut(s) 267, 657, 1103
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 577, 1067
Bse118I RCCGGY 1 cut(s) 812
Bse1I ACTGG 5 cut(s) 62, 110, 172, 433, 1168
BseBI CCWGG 4 cut(s) 732, 1068, 1088, 1104
BseDI CCNNGG 3 cut(s) 267, 657, 1103
BseGI GGATG 2 cut(s) 1083, 1113
BseLI CCNNNNNNNGG 3 cut(s) 87, 577, 1067
BseMII CTCAG 2 cut(s) 784, 896
BseNI ACTGG 5 cut(s) 62, 110, 172, 433, 1168
BseSI GKGCMC 2 cut(s) 110, 759
BseXI GCAGC 3 cut(s) 228, 359, 965
Bsh1285I CGRYCG 2 cut(s) 282, 1148
BshFI GGCC 8 cut(s) 37, 56, 92, 108, 212, 432, 757, 854
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 2 cut(s) 282, 1148
BsiHKAI GWGCWC 1 cut(s) 1161
BsiHKCI CYCGRG 1 cut(s) 1181
BsiSI CCGG 4 cut(s) 53, 357, 392, 813
BslI CCNNNNNNNGG 3 cut(s) 87, 577, 1067
BsmAI GTCTC 2 cut(s) 358, 913
BsmBI CGTCTC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 8 cut(s) 37, 56, 92, 108, 212, 432, 757, 854
BsoBI CYCGRG 1 cut(s) 1181
Bsp120I GGGCCC 2 cut(s) 106, 755
Bsp1286I GDGCHC 4 cut(s) 110, 583, 759, 1161
Bsp143I GATC 6 cut(s) 29, 77, 279, 529, 646, 1145
BspACI CCGC 2 cut(s) 272, 360
BspANI GGCC 8 cut(s) 37, 56, 92, 108, 212, 432, 757, 854
BspCNI CTCAG 2 cut(s) 783, 895
BspLI GGNNCC 5 cut(s) 108, 276, 582, 756, 757
BspMI ACCTGC 1 cut(s) 1069
BspOI GCTAGC 1 cut(s) 960
BspPI GGATC 3 cut(s) 72, 524, 641
BspT107I GGYRCC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 812
BsrI ACTGG 5 cut(s) 62, 110, 172, 433, 1168
BssAI RCCGGY 1 cut(s) 812
BssECI CCNNGG 3 cut(s) 267, 657, 1103
BssMI GATC 6 cut(s) 29, 77, 279, 529, 646, 1145
BssNAI GTATAC 1 cut(s) 633
BssNI GRCGYC 1 cut(s) 275
BssT1I CCWWGG 2 cut(s) 267, 657
Bst1107I GTATAC 1 cut(s) 633
Bst2UI CCWGG 4 cut(s) 732, 1068, 1088, 1104
Bst4CI ACNGT 1 cut(s) 988
BstACI GRCGYC 1 cut(s) 275
BstC8I GCNNGC 4 cut(s) 214, 264, 710, 958
BstDEI CTNAG 2 cut(s) 770, 882
BstF5I GGATG 2 cut(s) 1083, 1113
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 6 cut(s) 32, 80, 282, 532, 649, 1148
BstMAI GTCTC 2 cut(s) 358, 913
BstMBI GATC 6 cut(s) 29, 77, 279, 529, 646, 1145
BstMCI CGRYCG 2 cut(s) 282, 1148
BstMWI GCNNNNNNNGC 4 cut(s) 272, 281, 347, 1156
BstNI CCWGG 4 cut(s) 732, 1068, 1088, 1104
BstSCI CCNGG 5 cut(s) 51, 730, 1066, 1086, 1102
BstSFI CTRYAG 1 cut(s) 987
BstSLI GKGCMC 2 cut(s) 110, 759
BstV1I GCAGC 3 cut(s) 228, 359, 965
BstX2I RGATCY 1 cut(s) 646
BstXI CCANNNNNNTGG 2 cut(s) 160, 459
BstYI RGATCY 1 cut(s) 646
BstZ17I GTATAC 1 cut(s) 633
BsuI GTATCC 3 cut(s) 83, 656, 699
BsuRI GGCC 8 cut(s) 37, 56, 92, 108, 212, 432, 757, 854
BtsCI GGATG 2 cut(s) 1083, 1113
BtsIMutI CAGTG 5 cut(s) 69, 117, 984, 1161, 1188
BveI ACCTGC 1 cut(s) 1069
Cac8I GCNNGC 4 cut(s) 214, 264, 710, 958
CaiI CAGNNNCTG 1 cut(s) 222
CfoI GCGC 1 cut(s) 277
Cfr10I RCCGGY 1 cut(s) 812
Cfr13I GGNCC 9 cut(s) 36, 55, 90, 106, 107, 431, 755, 756, 1097
Csp6I GTAC 2 cut(s) 819, 1186
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 3 cut(s) 17, 787, 805
CviQI GTAC 2 cut(s) 819, 1186
DdeI CTNAG 2 cut(s) 770, 882
DinI GGCGCC 1 cut(s) 276
DpnI GATC 6 cut(s) 31, 79, 281, 531, 648, 1147
DpnII GATC 6 cut(s) 29, 77, 279, 529, 646, 1145
DraI TTTAAA 2 cut(s) 726, 972
DraIII CACNNNGTG 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 210
EciI GGCGGA 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 1159
Eco130I CCWWGG 2 cut(s) 267, 657
Eco24I GRGCYC 4 cut(s) 110, 583, 759, 1161
Eco47I GGWCC 1 cut(s) 1097
Eco53kI GAGCTC 1 cut(s) 1159
Eco57I CTGAAG 3 cut(s) 621, 824, 1212
Eco88I CYCGRG 1 cut(s) 1181
EcoICRI GAGCTC 1 cut(s) 1159
EcoO109I RGGNCCY 1 cut(s) 755
EcoRI GAATTC 1 cut(s) 47
EcoRII CCWGG 4 cut(s) 730, 1066, 1086, 1102
EcoT14I CCWWGG 2 cut(s) 267, 657
EcoT38I GRGCYC 4 cut(s) 110, 583, 759, 1161
EgeI GGCGCC 1 cut(s) 276
EheI GGCGCC 1 cut(s) 276
ErhI CCWWGG 2 cut(s) 267, 657
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 3 cut(s) 20, 790, 808
FalI AAGNNNNNCTT 6 cut(s) 305, 337, 429, 461, 650, 682
FatI CATG 3 cut(s) 16, 786, 804
FblI GTMKAC 1 cut(s) 632
Fnu4HI GCNGC 4 cut(s) 217, 273, 348, 954
FokI GGATG 2 cut(s) 1070, 1120
FriOI GRGCYC 4 cut(s) 110, 583, 759, 1161
Fsp4HI GCNGC 4 cut(s) 217, 273, 348, 954
FspBI CTAG 2 cut(s) 407, 957
GlaI GCGC 1 cut(s) 276
GluI GCNGC 4 cut(s) 217, 273, 348, 954
HaeII RGCGCY 1 cut(s) 278
HaeIII GGCC 8 cut(s) 37, 56, 92, 108, 212, 432, 757, 854
HapII CCGG 4 cut(s) 53, 357, 392, 813
HhaI GCGC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 3 cut(s) 20, 790, 808
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 3 cut(s) 4, 363, 1210
HpaII CCGG 4 cut(s) 53, 357, 392, 813
HphI GGTGA 2 cut(s) 1082, 1139
Hpy166II GTNNAC 3 cut(s) 522, 633, 1188
Hpy188I TCNGA 5 cut(s) 77, 338, 534, 646, 773
Hpy188III TCNNGA 5 cut(s) 407, 452, 650, 869, 1139
Hpy8I GTNNAC 3 cut(s) 522, 633, 1188
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 5 cut(s) 259, 295, 343, 596, 745
HpyCH4III ACNGT 1 cut(s) 988
HpyCH4IV ACGT 2 cut(s) 138, 174
HpyCH4V TGCA 4 cut(s) 443, 478, 488, 953
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 281, 347, 1156
HpyF3I CTNAG 2 cut(s) 770, 882
HpySE526I ACGT 2 cut(s) 138, 174
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 3 cut(s) 20, 790, 808
HspAI GCGC 1 cut(s) 275
KasI GGCGCC 1 cut(s) 274
Kzo9I GATC 6 cut(s) 29, 77, 279, 529, 646, 1145
LmnI GCTCC 3 cut(s) 338, 586, 1069
Lsp1109I GCAGC 3 cut(s) 228, 359, 965
LweI GCATC 3 cut(s) 228, 586, 643
MaeI CTAG 2 cut(s) 407, 957
MaeII ACGT 2 cut(s) 138, 174
MaeIII GTNAC 3 cut(s) 888, 1025, 1127
MalI GATC 6 cut(s) 31, 79, 281, 531, 648, 1147
MboI GATC 6 cut(s) 29, 77, 279, 529, 646, 1145
MboII GAAGA 5 cut(s) 227, 244, 802, 1085, 1205
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 4 cut(s) 110, 583, 759, 1161
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 7 cut(s) 23, 47, 85, 467, 509, 678, 967
MluNI TGGCCA 1 cut(s) 212
Mly113I GGCGCC 1 cut(s) 275
MmeI TCCRAC 2 cut(s) 989, 1022
MnlI CCTC 5 cut(s) 296, 397, 570, 844, 1110
Mox20I TGGCCA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 212
MseI TTAA 9 cut(s) 141, 447, 471, 677, 681, 725, 930, 971, 1050
MslI CAYNNNNRTG 1 cut(s) 158
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 4 cut(s) 53, 357, 392, 813
MspR9I CCNGG 5 cut(s) 53, 732, 1068, 1088, 1104
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 4 cut(s) 732, 1068, 1088, 1104
MwoI GCNNNNNNNGC 4 cut(s) 272, 281, 347, 1156
NarI GGCGCC 1 cut(s) 275
NciI CCSGG 1 cut(s) 53
NdeII GATC 6 cut(s) 29, 77, 279, 529, 646, 1145
NheI GCTAGC 1 cut(s) 956
NlaIII CATG 3 cut(s) 20, 790, 808
NlaIV GGNNCC 5 cut(s) 108, 276, 582, 756, 757
NmuCI GTSAC 2 cut(s) 888, 1127
OliI CACNNNNGTG 1 cut(s) 158
PacI TTAATTAA 1 cut(s) 681
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 363, 1210
PflMI CCANNNNNTGG 1 cut(s) 87
PkrI GCNGC 4 cut(s) 218, 274, 349, 955
Ple19I CGATCG 2 cut(s) 282, 1148
PluTI GGCGCC 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 1161
Psp1406I AACGTT 1 cut(s) 138
Psp6I CCWGG 4 cut(s) 730, 1066, 1086, 1102
PspGI CCWGG 4 cut(s) 730, 1066, 1086, 1102
PspN4I GGNNCC 5 cut(s) 108, 276, 582, 756, 757
PspOMI GGGCCC 2 cut(s) 106, 755
PspPI GGNCC 9 cut(s) 36, 55, 90, 106, 107, 431, 755, 756, 1097
PstNI CAGNNNCTG 1 cut(s) 222
PsuI RGATCY 1 cut(s) 646
PvuI CGATCG 2 cut(s) 282, 1148
RsaI GTAC 2 cut(s) 820, 1187
RsaNI GTAC 2 cut(s) 819, 1186
RseI CAYNNNNRTG 1 cut(s) 158
SacI GAGCTC 1 cut(s) 1161
SaqAI TTAA 9 cut(s) 141, 447, 471, 677, 681, 725, 930, 971, 1050
SatI GCNGC 4 cut(s) 217, 273, 348, 954
Sau3AI GATC 6 cut(s) 29, 77, 279, 529, 646, 1145
Sau96I GGNCC 9 cut(s) 36, 55, 90, 106, 107, 431, 755, 756, 1097
ScrFI CCNGG 5 cut(s) 53, 732, 1068, 1088, 1104
SduI GDGCHC 4 cut(s) 110, 583, 759, 1161
SfaNI GCATC 3 cut(s) 228, 586, 643
SfcI CTRYAG 1 cut(s) 987
SfoI GGCGCC 1 cut(s) 276
SinI GGWCC 1 cut(s) 1097
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 1137
SmoI CTYRAG 1 cut(s) 1137
Sse9I AATT 7 cut(s) 23, 47, 85, 467, 509, 678, 967
SsiI CCGC 2 cut(s) 272, 360
SspDI GGCGCC 1 cut(s) 274
SspMI CTAG 2 cut(s) 407, 957
SstI GAGCTC 1 cut(s) 1161
StyD4I CCNGG 5 cut(s) 51, 730, 1066, 1086, 1102
StyI CCWWGG 2 cut(s) 267, 657
TaaI ACNGT 1 cut(s) 988
TaiI ACGT 2 cut(s) 141, 177
TaqI TCGA 3 cut(s) 301, 311, 942
TaqII GACCGA 1 cut(s) 1158
TasI AATT 7 cut(s) 23, 47, 85, 467, 509, 678, 967
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 2 cut(s) 363, 1210
Tru1I TTAA 9 cut(s) 141, 447, 471, 677, 681, 725, 930, 971, 1050
Tru9I TTAA 9 cut(s) 141, 447, 471, 677, 681, 725, 930, 971, 1050
TscAI CASTG 5 cut(s) 69, 124, 991, 1168, 1195
TseFI GTSAC 2 cut(s) 888, 1127
TseI GCWGC 3 cut(s) 216, 347, 953
Tsp45I GTSAC 2 cut(s) 888, 1127
TspDTI ATGAA 5 cut(s) 426, 552, 764, 803, 1127
TspRI CASTG 5 cut(s) 69, 124, 991, 1168, 1195
Van91I CCANNNNNTGG 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 1097
XapI RAATTY 3 cut(s) 47, 467, 967
XbaI TCTAGA 1 cut(s) 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 1005
XmiI GTMKAC 1 cut(s) 632
XspI CTAG 2 cut(s) 407, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.