Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000810

Orthogroup ID

OG0009480

Physical Location & Seq

Genomic Coordinates Forward (+)

45423 .. 45877

Gene Structure 455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom810g00030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGACTCATAAAACACATGGGAAATTGAGAGCACATCGGCCGATCCATAAATGGGCCTTGTGGCTATTGGGCCCAGTAATCACTGACTTCCACGCCAGAAACGTTAAGACTTTTCCCACGAAAGTGGAAACTGGAAACGTCGCCAAGAGTAGTGAGAAATCAGCAAGGCAAGTGGCCAGCAGCATCTGTGCTTTGCTTCTTCCAATGGCTACCTTCTTCCAAAGGCTCGCCAAGGCGGCGCCGATCGCCTTCAACAGCTCGTTTCGAGGTCAATCGAAGTCCAGCTTTCGCATTCCCTTCGGGGCAGTCGCAGCCGTCTCCGGCGGAATCTCCTATCTCTGCTACCATTCCTCGCCGGATTTGGTAATTTCTCCT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

125

Amino Acids

13.62

Weight (kDa)

10.6

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20080
fragaria_vesca	FvH4_1g03580
malus_domestica	MD00G1107200.v1.1 MD02G1035100.v1.1
prunus_persica	Prupe.7G239800_v2.0.a1
pyrus_communis	pycom02g02870 pycom02g02890 pycom02g02910 pycom15g15760 pycom810g00010 pycom810g00030
rosa_chinensis	RchiOBHm_Chr2g0089111
rosa_laevigata	RLG00000015992
rosa_multiflora	Rmu_sc0003668.1_g000001 Rmu_sc0005510.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152240
rosa_rugosa	Rorug01G0487500
rosa_samantha	Rh2AG043000 Rh2BG041500 Rh2CG043100 Rh2DG042100
rosa_wichuraiana	Rw2G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AciI	CCGC	2 cut(s)	236, 324
AclI	AACGTT	1 cut(s)	102
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	2 cut(s)	38, 174
AcyI	GRCGYC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	253
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	2 cut(s)	258, 285
AluI	AGCT	2 cut(s)	258, 285
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	186
AoxI	GGCC	4 cut(s)	38, 54, 70, 174
ApaI	GGGCCC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	180, 311
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	3 cut(s)	54, 70, 71
BaeGI	GKGCMC	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	192, 323
BceAI	ACGGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BcoDI	GTCTC	1 cut(s)	322
BfoI	RGCGCY	1 cut(s)	242
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	3 cut(s)	181, 237, 312
BlsI	GCNGC	3 cut(s)	182, 238, 313
BmgT120I	GGNCC	3 cut(s)	54, 70, 71
BmiI	GGNNCC	2 cut(s)	72, 240
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	74, 136
BseDI	CCNNGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseNI	ACTGG	2 cut(s)	74, 136
BseSI	GKGCMC	1 cut(s)	74
BseX3I	CGGCCG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	192, 323
Bsh1285I	CGRYCG	2 cut(s)	41, 246
BshFI	GGCC	4 cut(s)	40, 56, 72, 176
BshNI	GGYRCC	1 cut(s)	238
BsiEI	CGRYCG	2 cut(s)	41, 246
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	321, 356
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	322
BsmBI	CGTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	4 cut(s)	40, 56, 72, 176
Bsp120I	GGGCCC	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	34, 74
Bsp143I	GATC	2 cut(s)	42, 243
BspACI	CCGC	2 cut(s)	236, 324
BspANI	GGCC	4 cut(s)	40, 56, 72, 176
BspLI	GGNNCC	2 cut(s)	72, 240
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	74, 136
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	42, 243
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	178, 228
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	2 cut(s)	45, 246
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	2 cut(s)	42, 243
BstMCI	CGRYCG	2 cut(s)	41, 246
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 245, 311
BstSLI	GKGCMC	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	192, 323
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstZI	CGGCCG	1 cut(s)	38
BsuRI	GGCC	4 cut(s)	40, 56, 72, 176
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	178, 228
CaiI	CAGNNNCTG	1 cut(s)	186
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	3 cut(s)	54, 70, 71
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviAII	CATG	1 cut(s)	17
DinI	GGCGCC	1 cut(s)	240
DpnI	GATC	2 cut(s)	44, 245
DpnII	GATC	2 cut(s)	42, 243
EaeI	YGGCCR	2 cut(s)	38, 174
EagI	CGGCCG	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	339
EclXI	CGGCCG	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	74
Eco52I	CGGCCG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	74
EgeI	GGCGCC	1 cut(s)	240
EheI	GGCGCC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	1 cut(s)	20
FaiI	YATR	3 cut(s)	9, 18, 48
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	181, 237, 312
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	3 cut(s)	181, 237, 312
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	3 cut(s)	181, 237, 312
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	4 cut(s)	40, 56, 72, 176
HapII	CCGG	2 cut(s)	321, 356
HhaI	GCGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	2 cut(s)	4, 327
HpaII	CCGG	2 cut(s)	321, 356
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	223, 259, 307
HpyCH4IV	ACGT	2 cut(s)	102, 138
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 245, 311
HpySE526I	ACGT	2 cut(s)	102, 138
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	1 cut(s)	239
KasI	GGCGCC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	42, 243
LpnPI	CCDG	7 cut(s)	87, 109, 117, 190, 295, 334, 369
Lsp1109I	GCAGC	2 cut(s)	192, 323
LweI	GCATC	1 cut(s)	192
MaeII	ACGT	2 cut(s)	102, 138
MalI	GATC	2 cut(s)	44, 245
MboI	GATC	2 cut(s)	42, 243
MboII	GAAGA	2 cut(s)	191, 208
MhlI	GDGCHC	2 cut(s)	34, 74
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	2 cut(s)	23, 366
MluNI	TGGCCA	1 cut(s)	176
Mly113I	GGCGCC	1 cut(s)	239
MnlI	CCTC	2 cut(s)	260, 361
Mox20I	TGGCCA	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	176
MspI	CCGG	2 cut(s)	321, 356
Mva1269I	GAATGC	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	236, 245, 311
NarI	GGCGCC	1 cut(s)	239
NdeII	GATC	2 cut(s)	42, 243
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	2 cut(s)	72, 240
OliI	CACNNNNGTG	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	327
PkrI	GCNGC	3 cut(s)	182, 238, 313
Ple19I	CGATCG	1 cut(s)	246
PluTI	GGCGCC	1 cut(s)	242
Psp1406I	AACGTT	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	72, 240
PspOMI	GGGCCC	1 cut(s)	70
PspPI	GGNCC	3 cut(s)	54, 70, 71
PstNI	CAGNNNCTG	1 cut(s)	186
PvuI	CGATCG	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	181, 237, 312
Sau3AI	GATC	2 cut(s)	42, 243
Sau96I	GGNCC	3 cut(s)	54, 70, 71
SduI	GDGCHC	2 cut(s)	34, 74
SetI	ASST	6 cut(s)	105, 141, 215, 260, 271, 287
SfaNI	GCATC	1 cut(s)	192
SfoI	GGCGCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	23, 366
SsiI	CCGC	2 cut(s)	236, 324
SspDI	GGCGCC	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	231
TaiI	ACGT	2 cut(s)	105, 141
TaqI	TCGA	2 cut(s)	265, 275
TasI	AATT	2 cut(s)	23, 366
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	2 cut(s)	180, 311
TspRI	CASTG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.