Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009480

Physical Location & Seq

Genomic Coordinates Reverse (-)

3344939 .. 3348708

Gene Structure 3770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG043000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCTGCCTTCTTTCAGAGACTGGCCAAGGCCGCCCCAACAGCCTTCACCGCTGCGTTCGCCGCCAGCGCCGGCGCCGGTGCCGGCCAATCTAAGACCGGCTTCCGCTTTCCAATCGGAGCACTCGCGGCTGTCTCCGGCGGAATCTCGTATATCTACTACCAGTCGTCGGCCGATTCGGTTTATCTAGATGAAATCAAAGAACAGGCTGGTCCAAAAATCGCACTTAATCCAGATAAATGGACTGAATTTAAGCTCCAAGACACGGCAAGAGTTAGCCACAATACTCAATTGTTCAGATTTACATTTGACCCAAATGCCAAGTTAGGTTTAGATGTGGCTTCATGCCTCATTACAAGGGCTCCAATTGGACAAGATGCTGAAGGGAAACCAAAATATGTCATACGGCCGTATACTCCTATATCAGATCCAGATTCCAAGGGATACTTTGACTTATTGATTAAGGTGTATCCAGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCAGGCGATGTAGTCGAAGTGAAGGGGCCCATTGAAAAGCTGAGATATGTTCCCAACATGAAGAAACATATTGGCATGATTGCAGGTGGTACTGGTATAACTCCTATGCTTCAGGTCATTGAGGCTATACTTAAAAATCCTGATGACACAACCAAGGTGTCGCTGGTTTATGCTAATGTCTCACCAGATGACATACTGCTTAAACAGAAACTTGACATACTTGCAGCTAGCCACCCTAATTTGAAGGTGTTTTACACAGTAGATAATCCAACAAAGAGTTGGAAAGGAGGTAAAGGCTACATATCAAAGGACATGGCAATTAAAGGCTTACCTGGTCCAGCTGAAGATACTCTCATCCTTGTAAGTGTTATTTGGAAGAGTTGCTCATGTACTTTTTGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

304

Amino Acids

32.9

Weight (kDa)

9.04

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	84 - 186	7.1e-26	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	196 - 291	2.2e-24	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20080
fragaria_vesca	FvH4_1g03580
malus_domestica	MD00G1107200.v1.1 MD02G1035100.v1.1
prunus_persica	Prupe.7G239800_v2.0.a1
pyrus_communis	pycom02g02870 pycom02g02890 pycom02g02910 pycom15g15760 pycom810g00010 pycom810g00030
rosa_chinensis	RchiOBHm_Chr2g0089111
rosa_laevigata	RLG00000015992
rosa_multiflora	Rmu_sc0003668.1_g000001 Rmu_sc0005510.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152240
rosa_rugosa	Rorug01G0487500
rosa_samantha	Rh2AG043000 Rh2BG041500 Rh2CG043100 Rh2DG042100
rosa_wichuraiana	Rw2G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	584
AccB1I	GGYRCC	2 cut(s)	74, 80
AccI	GTMKAC	1 cut(s)	413
AccII	CGCG	1 cut(s)	128
AciI	CCGC	6 cut(s)	33, 51, 63, 106, 128, 141
AclWI	GGATC	1 cut(s)	422
AcoI	YGGCCR	4 cut(s)	24, 85, 171, 407
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	3 cut(s)	402, 605, 873
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	2 cut(s)	601, 901
AfiI	CCNNNNNNNGG	2 cut(s)	169, 265
AgsI	TTSAA	2 cut(s)	545, 754
AjnI	CCWGG	2 cut(s)	511, 841
AluBI	AGCT	5 cut(s)	256, 504, 550, 737, 851
AluI	AGCT	5 cut(s)	256, 504, 550, 737, 851
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	3 cut(s)	13, 139, 694
AlwI	GGATC	1 cut(s)	422
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	6 cut(s)	24, 30, 85, 171, 407, 536
ApaI	GGGCCC	1 cut(s)	540
ApeKI	GCWGC	3 cut(s)	5, 53, 734
ApoI	RAATTY	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	71, 77
AspS9I	GGNCC	4 cut(s)	212, 536, 537, 845
AsuHPI	GGTGA	2 cut(s)	40, 684
AsuNHI	GCTAGC	1 cut(s)	737
AvaII	GGWCC	2 cut(s)	212, 845
BaeGI	GKGCMC	1 cut(s)	540
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	2 cut(s)	74, 80
BanII	GRGCYC	2 cut(s)	364, 540
BarI	GAAGNNNNNNTAC	2 cut(s)	746, 778
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	40, 746
BceAI	ACGGC	3 cut(s)	282, 394, 422
BciT130I	CCWGG	2 cut(s)	513, 843
BciVI	GTATCC	2 cut(s)	437, 480
BcoDI	GTCTC	3 cut(s)	13, 139, 694
BfaI	CTAG	2 cut(s)	188, 738
BfoI	RGCGCY	2 cut(s)	72, 78
BfuAI	ACCTGC	1 cut(s)	584
BfuI	GTATCC	2 cut(s)	437, 480
BisI	GCNGC	6 cut(s)	6, 33, 54, 63, 129, 735
BlsI	GCNGC	6 cut(s)	7, 34, 55, 64, 130, 736
Bme1390I	CCNGG	2 cut(s)	513, 843
Bme18I	GGWCC	2 cut(s)	212, 845
BmgT120I	GGNCC	4 cut(s)	212, 536, 537, 845
BmiI	GGNNCC	5 cut(s)	76, 82, 363, 537, 538
BmrFI	CCNGG	2 cut(s)	513, 843
BmsI	GCATC	1 cut(s)	367
BmtI	GCTAGC	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	27, 438, 663
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 265
Bse118I	RCCGGY	4 cut(s)	71, 77, 83, 98
Bse1I	ACTGG	3 cut(s)	27, 163, 607
BseBI	CCWGG	2 cut(s)	513, 843
BseDI	CCNNGG	3 cut(s)	27, 438, 663
BseGI	GGATG	1 cut(s)	864
BseLI	CCNNNNNNNGG	2 cut(s)	169, 265
BseMII	CTCAG	1 cut(s)	542
BseNI	ACTGG	3 cut(s)	27, 163, 607
BseSI	GKGCMC	1 cut(s)	540
BseX3I	CGGCCG	2 cut(s)	171, 407
BseXI	GCAGC	2 cut(s)	40, 746
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	2 cut(s)	174, 410
BshFI	GGCC	6 cut(s)	26, 32, 87, 173, 409, 538
BshNI	GGYRCC	2 cut(s)	74, 80
BsiEI	CGRYCG	2 cut(s)	174, 410
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	5 cut(s)	72, 78, 84, 99, 138
BslI	CCNNNNNNNGG	2 cut(s)	169, 265
BsmAI	GTCTC	3 cut(s)	13, 139, 694
BsnI	GGCC	6 cut(s)	26, 32, 87, 173, 409, 538
Bsp120I	GGGCCC	1 cut(s)	536
Bsp1286I	GDGCHC	3 cut(s)	124, 364, 540
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	6 cut(s)	33, 51, 63, 106, 128, 141
BspANI	GGCC	6 cut(s)	26, 32, 87, 173, 409, 538
BspCNI	CTCAG	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	5 cut(s)	76, 82, 363, 537, 538
BspMI	ACCTGC	1 cut(s)	584
BspOI	GCTAGC	1 cut(s)	741
BspPI	GGATC	1 cut(s)	422
BspT107I	GGYRCC	2 cut(s)	74, 80
BsrFI	RCCGGY	4 cut(s)	71, 77, 83, 98
BsrI	ACTGG	3 cut(s)	27, 163, 607
BssAI	RCCGGY	4 cut(s)	71, 77, 83, 98
BssECI	CCNNGG	3 cut(s)	27, 438, 663
BssMI	GATC	1 cut(s)	427
BssNAI	GTATAC	1 cut(s)	414
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	3 cut(s)	27, 438, 663
Bst1107I	GTATAC	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	513, 843
Bst4CI	ACNGT	1 cut(s)	769
Bst6I	CTCTTC	1 cut(s)	881
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	6 cut(s)	67, 73, 85, 491, 502, 739
BstDEI	CTNAG	2 cut(s)	93, 551
BstF5I	GGATG	1 cut(s)	864
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	2 cut(s)	72, 78
BstHHI	GCGC	2 cut(s)	71, 77
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	3 cut(s)	13, 139, 694
BstMBI	GATC	1 cut(s)	427
BstMCI	CGRYCG	2 cut(s)	174, 410
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 41, 50, 59, 62, 68, 128
BstNI	CCWGG	2 cut(s)	513, 843
BstSCI	CCNGG	2 cut(s)	511, 841
BstSLI	GKGCMC	1 cut(s)	540
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	40, 746
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	427
BstZ17I	GTATAC	1 cut(s)	414
BstZI	CGGCCG	2 cut(s)	171, 407
BsuI	GTATCC	2 cut(s)	437, 480
BsuRI	GGCC	6 cut(s)	26, 32, 87, 173, 409, 538
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	864
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	6 cut(s)	67, 73, 85, 491, 502, 739
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	2 cut(s)	71, 77
Cfr10I	RCCGGY	4 cut(s)	71, 77, 83, 98
Cfr13I	GGNCC	4 cut(s)	212, 536, 537, 845
CsiI	ACCWGGT	1 cut(s)	841
Csp6I	GTAC	2 cut(s)	600, 900
CviAII	CATG	5 cut(s)	345, 568, 586, 823, 897
CviQI	GTAC	2 cut(s)	600, 900
DdeI	CTNAG	2 cut(s)	93, 551
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
EaeI	YGGCCR	4 cut(s)	24, 85, 171, 407
EagI	CGGCCG	2 cut(s)	171, 407
Eam1104I	CTCTTC	1 cut(s)	881
EarI	CTCTTC	1 cut(s)	881
EciI	GGCGGA	1 cut(s)	156
EclXI	CGGCCG	2 cut(s)	171, 407
Eco130I	CCWWGG	3 cut(s)	27, 438, 663
Eco24I	GRGCYC	2 cut(s)	364, 540
Eco47I	GGWCC	2 cut(s)	212, 845
Eco52I	CGGCCG	2 cut(s)	171, 407
Eco57I	CTGAAG	3 cut(s)	402, 605, 873
EcoO109I	RGGNCCY	1 cut(s)	536
EcoRII	CCWGG	2 cut(s)	511, 841
EcoT14I	CCWWGG	3 cut(s)	27, 438, 663
EcoT38I	GRGCYC	2 cut(s)	364, 540
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
ErhI	CCWWGG	3 cut(s)	27, 438, 663
FaeI	CATG	5 cut(s)	348, 571, 589, 826, 900
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 431, 463
FatI	CATG	5 cut(s)	344, 567, 585, 822, 896
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	6 cut(s)	6, 33, 54, 63, 129, 735
FokI	GGATG	1 cut(s)	851
FriOI	GRGCYC	2 cut(s)	364, 540
Fsp4HI	GCNGC	6 cut(s)	6, 33, 54, 63, 129, 735
FspBI	CTAG	2 cut(s)	188, 738
GlaI	GCGC	2 cut(s)	70, 76
GluI	GCNGC	6 cut(s)	6, 33, 54, 63, 129, 735
HaeII	RGCGCY	2 cut(s)	72, 78
HaeIII	GGCC	6 cut(s)	26, 32, 87, 173, 409, 538
HapII	CCGG	5 cut(s)	72, 78, 84, 99, 138
HhaI	GCGC	2 cut(s)	71, 77
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	5 cut(s)	348, 571, 589, 826, 900
Hin6I	GCGC	2 cut(s)	69, 75
HinP1I	GCGC	2 cut(s)	69, 75
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	3 cut(s)	144, 176, 434
HpaII	CCGG	5 cut(s)	72, 78, 84, 99, 138
HphI	GGTGA	2 cut(s)	40, 684
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	4 cut(s)	18, 119, 299, 427
Hpy188III	TCNNGA	5 cut(s)	188, 233, 431, 473, 650
Hpy8I	GTNNAC	1 cut(s)	414
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	6 cut(s)	19, 55, 377, 470, 526, 748
HpyCH4III	ACNGT	1 cut(s)	769
HpyCH4V	TGCA	4 cut(s)	500, 593, 734, 909
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 41, 50, 59, 62, 68, 128
HpyF3I	CTNAG	2 cut(s)	93, 551
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	5 cut(s)	348, 571, 589, 826, 900
HspAI	GCGC	2 cut(s)	69, 75
KasI	GGCGCC	1 cut(s)	74
KroI	GCCGGC	2 cut(s)	71, 83
KroNI	GCCGGC	2 cut(s)	73, 85
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	3 cut(s)	119, 261, 367
Lsp1109I	GCAGC	2 cut(s)	40, 746
LweI	GCATC	1 cut(s)	367
MabI	ACCWGGT	1 cut(s)	841
MaeI	CTAG	2 cut(s)	188, 738
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	3 cut(s)	583, 866, 898
MfeI	CAATTG	2 cut(s)	290, 366
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	3 cut(s)	124, 364, 540
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	5 cut(s)	248, 290, 366, 748, 828
MluNI	TGGCCA	1 cut(s)	26
Mly113I	GGCGCC	1 cut(s)	75
MmeI	TCCRAC	2 cut(s)	770, 803
MnlI	CCTC	3 cut(s)	359, 625, 791
Mox20I	TGGCCA	1 cut(s)	26
MreI	CGCCGGCG	1 cut(s)	71
MroNI	GCCGGC	2 cut(s)	71, 83
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	7 cut(s)	228, 252, 462, 506, 642, 711, 831
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	2 cut(s)	53, 851
MspI	CCGG	5 cut(s)	72, 78, 84, 99, 138
MspR9I	CCNGG	2 cut(s)	513, 843
MunI	CAATTG	2 cut(s)	290, 366
MvaI	CCWGG	2 cut(s)	513, 843
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	7 cut(s)	32, 41, 50, 59, 62, 68, 128
NaeI	GCCGGC	2 cut(s)	73, 85
NarI	GGCGCC	1 cut(s)	75
NdeII	GATC	1 cut(s)	427
NgoMIV	GCCGGC	2 cut(s)	71, 83
NheI	GCTAGC	1 cut(s)	737
NlaIII	CATG	5 cut(s)	348, 571, 589, 826, 900
NlaIV	GGNNCC	5 cut(s)	76, 82, 363, 537, 538
PaqCI	CACCTGC	1 cut(s)	584
PdiI	GCCGGC	2 cut(s)	73, 85
PfeI	GAWTC	3 cut(s)	144, 176, 434
PkrI	GCNGC	6 cut(s)	7, 34, 55, 64, 130, 736
PluTI	GGCGCC	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	511, 841
PspGI	CCWGG	2 cut(s)	511, 841
PspN4I	GGNNCC	5 cut(s)	76, 82, 363, 537, 538
PspOMI	GGGCCC	1 cut(s)	536
PspPI	GGNCC	4 cut(s)	212, 536, 537, 845
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	2 cut(s)	601, 901
RsaNI	GTAC	2 cut(s)	600, 900
SaqAI	TTAA	7 cut(s)	228, 252, 462, 506, 642, 711, 831
SatI	GCNGC	6 cut(s)	6, 33, 54, 63, 129, 735
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	4 cut(s)	212, 536, 537, 845
ScrFI	CCNGG	2 cut(s)	513, 843
SduI	GDGCHC	3 cut(s)	124, 364, 540
SexAI	ACCWGGT	1 cut(s)	841
SfaNI	GCATC	1 cut(s)	367
SfoI	GGCGCC	1 cut(s)	76
SgrAI	CRCCGGYG	2 cut(s)	71, 77
SinI	GGWCC	2 cut(s)	212, 845
Sse9I	AATT	5 cut(s)	248, 290, 366, 748, 828
SsiI	CCGC	6 cut(s)	33, 51, 63, 106, 128, 141
SspDI	GGCGCC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	188, 738
StyD4I	CCNGG	2 cut(s)	511, 841
StyI	CCWWGG	3 cut(s)	27, 438, 663
TaaI	ACNGT	1 cut(s)	769
TaqI	TCGA	1 cut(s)	525
TasI	AATT	5 cut(s)	248, 290, 366, 748, 828
TatI	WGTACW	1 cut(s)	899
TauI	GCSGC	3 cut(s)	35, 65, 131
TfiI	GAWTC	3 cut(s)	144, 176, 434
Tru1I	TTAA	7 cut(s)	228, 252, 462, 506, 642, 711, 831
Tru9I	TTAA	7 cut(s)	228, 252, 462, 506, 642, 711, 831
TseI	GCWGC	3 cut(s)	5, 53, 734
TspDTI	ATGAA	3 cut(s)	207, 333, 584
VpaK11BI	GGWCC	2 cut(s)	212, 845
XapI	RAATTY	1 cut(s)	248
XbaI	TCTAGA	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	2 cut(s)	670, 786
XmiI	GTMKAC	1 cut(s)	413
XspI	CTAG	2 cut(s)	188, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.