Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009480

Physical Location & Seq

Genomic Coordinates Forward (+)

20681163 .. 20684955

Gene Structure 3793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G239800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACTGCCTTCTTTCAGAGACTGGCTAAGGCTGCCCCAATCGCCTTCAACAACTCATTTGGAGGCCAATCCAAGTCCAGCTTTCGCATTCCCTTTGGAGCTCTCGCAGCTGTCTCTGGTGGAATCTCCTATCTCTGCTACTATTCCTCGCCAGATTTGGTTTATCTAGATGAGATCAAAGAACAGGCAGGCCCAAAAGTTGCGCTTAATCCCAACAAGTGGATTGAATTTAAGTTGCAAGATACTGCAAGGGTTAGCCACAACACTCAATTGTTCAGATTTACATTTGATCCCACTGCCAAGTTGGGTTTAGATGTTGCTTCATGTCTCATTACGAGGGCTCCAATAGAACAAGATGCAGAAGGGAAACCAAAATATGTCATACGCCCGTATACTCCTATTTCAGATCCAGATTCCAAGGGATACTTTGACTTGTTAATTAAGGTGTATCCAGAAGGAAAAATGAGCCAGCATTTTGCAAGCTTAAAACCAGGCGATGTAGTTGAAGTGAAGGGGCCCATTGAAAAGTTCAGATATACTCCCAACATGAAGAAACACATAGGCATGATTGCAGGTGGCAGTGGTATTACTCCAATGCTTCAGGTTATTGAGGCTATAATGAAAAATCCCGATGACACGACTCAGGTGTCACTGCTTTATGCTAATGTCTCCCCAGATGACATATTGCTTAAACAGAAACTTGACATACTTGCAGCTAGCCACCCAAATTTAAAGGTATATTACACAGTAGATAATCCAACAAAGAGTTGGAAAGGGGGAAAAGGTTACATATCGAAGGACATGGCCGTTAAAGGCTTACCTGGTCCTGCTGAAGATACTCTCATCCTTGTATGTGGCCCCCCTGGATTGATGAAACATATATCTGGTGACAAGGCTAAAGACTGGTCACAAGGAGAGCTCACTGGCATACTAAAAGAACTTGGATACACAGAAGAAATGGTTTACAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

325

Amino Acids

35.65

Weight (kDa)

8.67

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20080
fragaria_vesca	FvH4_1g03580
malus_domestica	MD00G1107200.v1.1 MD02G1035100.v1.1
prunus_persica	Prupe.7G239800_v2.0.a1
pyrus_communis	pycom02g02870 pycom02g02890 pycom02g02910 pycom15g15760 pycom810g00010 pycom810g00030
rosa_chinensis	RchiOBHm_Chr2g0089111
rosa_laevigata	RLG00000015992
rosa_multiflora	Rmu_sc0003668.1_g000001 Rmu_sc0005510.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152240
rosa_rugosa	Rorug01G0487500
rosa_samantha	Rh2AG043000 Rh2BG041500 Rh2CG043100 Rh2DG042100
rosa_wichuraiana	Rw2G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	563
AasI	GACNNNNNNGTC	1 cut(s)	646
Acc36I	ACCTGC	1 cut(s)	563
AccB7I	CCANNNNNTGG	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	392
AclWI	GGATC	2 cut(s)	284, 401
AcoI	YGGCCR	1 cut(s)	804
AcsI	RAATTY	3 cut(s)	227, 727, 968
AcuI	CTGAAG	2 cut(s)	584, 852
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	4 cut(s)	49, 227, 506, 524
AjnI	CCWGG	3 cut(s)	490, 820, 862
AluBI	AGCT	6 cut(s)	81, 101, 110, 483, 716, 919
AluI	AGCT	6 cut(s)	81, 101, 110, 483, 716, 919
Alw21I	GWGCWC	2 cut(s)	103, 921
Alw26I	GTCTC	4 cut(s)	13, 118, 332, 673
AlwI	GGATC	2 cut(s)	284, 401
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	5 cut(s)	64, 190, 515, 804, 856
ApaI	GGGCCC	1 cut(s)	519
ApeKI	GCWGC	3 cut(s)	32, 107, 713
ApoI	RAATTY	3 cut(s)	227, 727, 968
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	5 cut(s)	191, 515, 516, 824, 857
AsuHPI	GGTGA	1 cut(s)	899
AsuNHI	GCTAGC	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	824
BaeGI	GKGCMC	1 cut(s)	519
BanII	GRGCYC	4 cut(s)	103, 343, 519, 921
Bbv12I	GWGCWC	2 cut(s)	103, 921
BbvI	GCAGC	3 cut(s)	19, 119, 725
BceAI	ACGGC	1 cut(s)	791
BciT130I	CCWGG	3 cut(s)	492, 822, 864
BciVI	GTATCC	3 cut(s)	416, 459, 938
BcoDI	GTCTC	4 cut(s)	13, 118, 332, 673
BfaI	CTAG	2 cut(s)	167, 717
BfuAI	ACCTGC	1 cut(s)	563
BfuI	GTATCC	3 cut(s)	416, 459, 938
BisI	GCNGC	3 cut(s)	33, 108, 714
BlsI	GCNGC	3 cut(s)	34, 109, 715
Bme1390I	CCNGG	3 cut(s)	492, 822, 864
Bme18I	GGWCC	1 cut(s)	824
BmgT120I	GGNCC	5 cut(s)	191, 515, 516, 824, 857
BmiI	GGNNCC	4 cut(s)	342, 516, 517, 859
BmrFI	CCNGG	3 cut(s)	492, 822, 864
BmsI	GCATC	1 cut(s)	346
BmtI	GCTAGC	1 cut(s)	720
Bpu10I	CCTNAGC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	417, 862
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	3 cut(s)	27, 908, 928
BseBI	CCWGG	3 cut(s)	492, 822, 864
BseDI	CCNNGG	2 cut(s)	417, 862
BseGI	GGATG	1 cut(s)	843
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	656
BseNI	ACTGG	3 cut(s)	27, 908, 928
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	3 cut(s)	19, 119, 725
BshFI	GGCC	5 cut(s)	66, 192, 517, 806, 858
BsiHKAI	GWGCWC	2 cut(s)	103, 921
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	4 cut(s)	13, 118, 332, 673
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	5 cut(s)	66, 192, 517, 806, 858
Bsp120I	GGGCCC	1 cut(s)	515
Bsp1286I	GDGCHC	4 cut(s)	103, 343, 519, 921
Bsp143I	GATC	3 cut(s)	174, 289, 406
BspANI	GGCC	5 cut(s)	66, 192, 517, 806, 858
BspCNI	CTCAG	1 cut(s)	655
BspLI	GGNNCC	4 cut(s)	342, 516, 517, 859
BspMI	ACCTGC	1 cut(s)	563
BspOI	GCTAGC	1 cut(s)	720
BspPI	GGATC	2 cut(s)	284, 401
BsrI	ACTGG	3 cut(s)	27, 908, 928
BssECI	CCNNGG	2 cut(s)	417, 862
BssMI	GATC	3 cut(s)	174, 289, 406
BssNAI	GTATAC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	393
Bst2UI	CCWGG	3 cut(s)	492, 822, 864
Bst4CI	ACNGT	1 cut(s)	748
BstC8I	GCNNGC	4 cut(s)	190, 470, 481, 718
BstDEI	CTNAG	2 cut(s)	27, 642
BstF5I	GGATG	1 cut(s)	843
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	3 cut(s)	177, 292, 409
BstMAI	GTCTC	4 cut(s)	13, 118, 332, 673
BstMBI	GATC	3 cut(s)	174, 289, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 41, 107
BstNI	CCWGG	3 cut(s)	492, 822, 864
BstSCI	CCNGG	3 cut(s)	490, 820, 862
BstSLI	GKGCMC	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	19, 119, 725
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BstZ17I	GTATAC	1 cut(s)	393
BsuI	GTATCC	3 cut(s)	416, 459, 938
BsuRI	GGCC	5 cut(s)	66, 192, 517, 806, 858
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	843
BtsI	GCAGTG	3 cut(s)	294, 586, 650
BtsIMutI	CAGTG	4 cut(s)	294, 586, 650, 921
BveI	ACCTGC	1 cut(s)	563
Cac8I	GCNNGC	4 cut(s)	190, 470, 481, 718
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	5 cut(s)	191, 515, 516, 824, 857
CsiI	ACCWGGT	1 cut(s)	820
CviAII	CATG	4 cut(s)	324, 547, 565, 802
DdeI	CTNAG	2 cut(s)	27, 642
DpnI	GATC	3 cut(s)	176, 291, 408
DpnII	GATC	3 cut(s)	174, 289, 406
DraI	TTTAAA	1 cut(s)	732
DrdI	GACNNNNNNGTC	1 cut(s)	646
DseDI	GACNNNNNNGTC	1 cut(s)	646
EaeI	YGGCCR	1 cut(s)	804
Ecl136II	GAGCTC	2 cut(s)	101, 919
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	4 cut(s)	103, 343, 519, 921
Eco47I	GGWCC	1 cut(s)	824
Eco53kI	GAGCTC	2 cut(s)	101, 919
Eco57I	CTGAAG	2 cut(s)	584, 852
EcoICRI	GAGCTC	2 cut(s)	101, 919
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRII	CCWGG	3 cut(s)	490, 820, 862
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	4 cut(s)	103, 343, 519, 921
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	4 cut(s)	327, 550, 568, 805
FalI	AAGNNNNNCTT	6 cut(s)	65, 97, 189, 221, 410, 442
FatI	CATG	4 cut(s)	323, 546, 564, 801
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	3 cut(s)	33, 108, 714
FokI	GGATG	1 cut(s)	830
FriOI	GRGCYC	4 cut(s)	103, 343, 519, 921
Fsp4HI	GCNGC	3 cut(s)	33, 108, 714
FspBI	CTAG	2 cut(s)	167, 717
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	3 cut(s)	33, 108, 714
HaeIII	GGCC	5 cut(s)	66, 192, 517, 806, 858
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	4 cut(s)	327, 550, 568, 805
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	3 cut(s)	123, 413, 640
HphI	GGTGA	1 cut(s)	899
Hpy166II	GTNNAC	2 cut(s)	393, 964
Hpy188I	TCNGA	4 cut(s)	18, 278, 406, 533
Hpy188III	TCNNGA	4 cut(s)	167, 410, 452, 629
Hpy8I	GTNNAC	2 cut(s)	393, 964
HpyAV	CCTTC	6 cut(s)	19, 55, 356, 449, 505, 790
HpyCH4III	ACNGT	1 cut(s)	748
HpyCH4V	TGCA	6 cut(s)	238, 248, 359, 479, 572, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 41, 107
HpyF3I	CTNAG	2 cut(s)	27, 642
Hsp92II	CATG	4 cut(s)	327, 550, 568, 805
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	3 cut(s)	174, 289, 406
LmnI	GCTCC	2 cut(s)	98, 346
Lsp1109I	GCAGC	3 cut(s)	19, 119, 725
LweI	GCATC	1 cut(s)	346
MabI	ACCWGGT	1 cut(s)	820
MaeI	CTAG	2 cut(s)	167, 717
MaeIII	GTNAC	4 cut(s)	648, 785, 887, 906
MalI	GATC	3 cut(s)	176, 291, 408
MboI	GATC	3 cut(s)	174, 289, 406
MboII	GAAGA	3 cut(s)	562, 845, 965
MfeI	CAATTG	1 cut(s)	269
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	4 cut(s)	103, 343, 519, 921
MluCI	AATT	5 cut(s)	227, 269, 438, 727, 968
MlyI	GAGTC	1 cut(s)	634
MmeI	TCCRAC	2 cut(s)	749, 782
MnlI	CCTC	4 cut(s)	56, 157, 330, 604
MseI	TTAA	8 cut(s)	207, 231, 437, 441, 485, 690, 731, 810
MslI	CAYNNNNRTG	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	110
MspR9I	CCNGG	3 cut(s)	492, 822, 864
MunI	CAATTG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	3 cut(s)	492, 822, 864
MwoI	GCNNNNNNNGC	3 cut(s)	32, 41, 107
NdeII	GATC	3 cut(s)	174, 289, 406
NheI	GCTAGC	1 cut(s)	716
NlaIII	CATG	4 cut(s)	327, 550, 568, 805
NlaIV	GGNNCC	4 cut(s)	342, 516, 517, 859
NmuCI	GTSAC	3 cut(s)	648, 887, 906
PacI	TTAATTAA	1 cut(s)	441
PaqCI	CACCTGC	1 cut(s)	563
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	123, 413
PflMI	CCANNNNNTGG	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	34, 109, 715
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Psp124BI	GAGCTC	2 cut(s)	103, 921
Psp6I	CCWGG	3 cut(s)	490, 820, 862
PspGI	CCWGG	3 cut(s)	490, 820, 862
PspN4I	GGNNCC	4 cut(s)	342, 516, 517, 859
PspOMI	GGGCCC	1 cut(s)	515
PspPI	GGNCC	5 cut(s)	191, 515, 516, 824, 857
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	563
SacI	GAGCTC	2 cut(s)	103, 921
SaqAI	TTAA	8 cut(s)	207, 231, 437, 441, 485, 690, 731, 810
SatI	GCNGC	3 cut(s)	33, 108, 714
Sau3AI	GATC	3 cut(s)	174, 289, 406
Sau96I	GGNCC	5 cut(s)	191, 515, 516, 824, 857
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	3 cut(s)	492, 822, 864
SduI	GDGCHC	4 cut(s)	103, 343, 519, 921
SexAI	ACCWGGT	1 cut(s)	820
SfaNI	GCATC	1 cut(s)	346
SinI	GGWCC	1 cut(s)	824
SmiMI	CAYNNNNRTG	1 cut(s)	563
Sse9I	AATT	5 cut(s)	227, 269, 438, 727, 968
SspMI	CTAG	2 cut(s)	167, 717
SstI	GAGCTC	2 cut(s)	103, 921
StyD4I	CCNGG	3 cut(s)	490, 820, 862
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	748
TaqI	TCGA	1 cut(s)	794
TasI	AATT	5 cut(s)	227, 269, 438, 727, 968
TfiI	GAWTC	2 cut(s)	123, 413
Tru1I	TTAA	8 cut(s)	207, 231, 437, 441, 485, 690, 731, 810
Tru9I	TTAA	8 cut(s)	207, 231, 437, 441, 485, 690, 731, 810
TscAI	CASTG	4 cut(s)	301, 586, 657, 928
TseFI	GTSAC	3 cut(s)	648, 887, 906
TseI	GCWGC	3 cut(s)	32, 107, 713
Tsp45I	GTSAC	3 cut(s)	648, 887, 906
TspDTI	ATGAA	4 cut(s)	312, 563, 635, 887
TspRI	CASTG	4 cut(s)	301, 586, 657, 928
Van91I	CCANNNNNTGG	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	824
XapI	RAATTY	3 cut(s)	227, 727, 968
XbaI	TCTAGA	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	2 cut(s)	301, 765
XmiI	GTMKAC	1 cut(s)	392
XspI	CTAG	2 cut(s)	167, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.