Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009480

Physical Location & Seq

Genomic Coordinates Reverse (-)

1955187 .. 1960036

Gene Structure 4850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCTGCCTTCTTTCAGAGACTCGCCAAGGCCACCCCAACCGCCTTCACCGCCGCCTTCAACTCCGGCTCCGGCCACTCCAGGTCCGCCTTCCGCTTTCCGATCGGTGCTCTCGCGGCTGTCTCCGGCGGAATCTCGTACGTCTACTACCACTCGTCGGTTTCCGATCCGGTTTATCTAGATGAAATCAAAGAAGAACAGACTGGTCCAAAAGTTGCACTTAATCCGAATAAATGGACAGAATTTAAGCTGCAAGACTCGGCAAGAGTTAGCCACAATACTCAATTGTTCAGATTTACATTTGACCCAACCGCCAAGTTAGGTTTAGATGTGGCTTCATGCCTCATTACAAGGGCTCCAATTGGACAAGATGCTGAAGGGAAACCAAAATTTGTCACACGCCCGTATACTCCTATATCAGATCCAGAGTCCAAGGGATACTTTGACTTATTGATTAAGGTGTATCCAGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCAGGCGATGTACTCGAAGTGAAGGGGCCTATTGAAAAGTTGAGATATATTCCCAACATGAAGAAACACATTGGCATGATTGCAGGTGGTTCTGGTATCACTCCAATGCTTCAGGTCATTGAGGCTATACTTAAAAATCCTGATGACACAACCAAGGTGTCACTGCTTTATGCTAATGTGTCTCCAGATGACATACTGCTTAAACAGAAACTTGACCTACTTGCAGCTGCCCACCCTAATTTGAAGGTCTATTACACAGTTGATAATCCTACAAAGAGTTGGAAAGGAGGGAAAGGCTTCATATCAAAGGACATGGCAGTTAAAGGGTTACCTGGTCCCTCTGAAGATACTCTCATCCTTGTATGCGGTCCTCCTGGGATGATGGAACACATATCTGGAGGCAAGGCTAAAGACTGGTCACAAGGAGAGCTCTCTGGCATACTAAAAGAACTTGGCTACACAGAAGAAATGGTTTACAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

330

Amino Acids

35.92

Weight (kDa)

8.75

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	82 - 184	5.5e-25	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	194 - 299	9.9e-31	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20080
fragaria_vesca	FvH4_1g03580
malus_domestica	MD00G1107200.v1.1 MD02G1035100.v1.1
prunus_persica	Prupe.7G239800_v2.0.a1
pyrus_communis	pycom02g02870 pycom02g02890 pycom02g02910 pycom15g15760 pycom810g00010 pycom810g00030
rosa_chinensis	RchiOBHm_Chr2g0089111
rosa_laevigata	RLG00000015992
rosa_multiflora	Rmu_sc0003668.1_g000001 Rmu_sc0005510.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152240
rosa_rugosa	Rorug01G0487500
rosa_samantha	Rh2AG043000 Rh2BG041500 Rh2CG043100 Rh2DG042100
rosa_wichuraiana	Rw2G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	578
AccI	GTMKAC	2 cut(s)	144, 407
AccII	CGCG	1 cut(s)	116
AciI	CCGC	9 cut(s)	42, 51, 54, 87, 94, 116, 129, 312, 870
AclWI	GGATC	2 cut(s)	161, 416
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	3 cut(s)	242, 389, 983
AcuI	CTGAAG	3 cut(s)	396, 599, 867
AfaI	GTAC	2 cut(s)	140, 516
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	3 cut(s)	61, 539, 748
AjnI	CCWGG	4 cut(s)	80, 505, 835, 877
AluBI	AGCT	4 cut(s)	250, 498, 731, 934
AluI	AGCT	4 cut(s)	250, 498, 731, 934
Alw21I	GWGCWC	2 cut(s)	112, 936
Alw26I	GTCTC	3 cut(s)	13, 127, 690
AlwI	GGATC	2 cut(s)	161, 416
AoxI	GGCC	3 cut(s)	30, 73, 530
ApeKI	GCWGC	4 cut(s)	5, 250, 728, 731
ApoI	RAATTY	3 cut(s)	242, 389, 983
Asp700I	GAANNNNTTC	1 cut(s)	800
AspS9I	GGNCC	5 cut(s)	84, 206, 530, 839, 872
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	4 cut(s)	84, 206, 839, 872
BanII	GRGCYC	2 cut(s)	358, 936
BarI	GAAGNNNNNNTAC	2 cut(s)	740, 772
Bbv12I	GWGCWC	2 cut(s)	112, 936
BbvI	GCAGC	3 cut(s)	237, 718, 740
BccI	CCATC	1 cut(s)	880
BciT130I	CCWGG	4 cut(s)	82, 507, 837, 879
BciVI	GTATCC	2 cut(s)	431, 474
BcoDI	GTCTC	3 cut(s)	13, 127, 690
BfaI	CTAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	578
BfuI	GTATCC	2 cut(s)	431, 474
BisI	GCNGC	6 cut(s)	6, 54, 117, 251, 729, 732
BlsI	GCNGC	6 cut(s)	7, 55, 118, 252, 730, 733
Bme1390I	CCNGG	4 cut(s)	82, 507, 837, 879
Bme18I	GGWCC	4 cut(s)	84, 206, 839, 872
BmgT120I	GGNCC	5 cut(s)	84, 206, 530, 839, 872
BmiI	GGNNCC	4 cut(s)	70, 357, 531, 841
BmrFI	CCNGG	4 cut(s)	82, 507, 837, 879
BmsI	GCATC	1 cut(s)	361
BpmI	CTGGAG	3 cut(s)	64, 672, 921
BsaJI	CCNNGG	4 cut(s)	27, 432, 657, 878
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 340, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	208, 923
BseBI	CCWGG	4 cut(s)	82, 507, 837, 879
BseDI	CCNNGG	4 cut(s)	27, 432, 657, 878
BseGI	GGATG	2 cut(s)	858, 888
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	208, 923
BseXI	GCAGC	3 cut(s)	237, 718, 740
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	32, 75, 532
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	112, 936
BsiSI	CCGG	4 cut(s)	66, 72, 126, 170
BsiWI	CGTACG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	825
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	3 cut(s)	13, 127, 690
BsmFI	GGGAC	1 cut(s)	825
BsnI	GGCC	3 cut(s)	32, 75, 532
Bsp1286I	GDGCHC	3 cut(s)	112, 358, 936
Bsp143I	GATC	3 cut(s)	102, 166, 421
BspACI	CCGC	9 cut(s)	42, 51, 54, 87, 94, 116, 129, 312, 870
BspANI	GGCC	3 cut(s)	32, 75, 532
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	4 cut(s)	70, 357, 531, 841
BspMI	ACCTGC	1 cut(s)	578
BspPI	GGATC	2 cut(s)	161, 416
BsrI	ACTGG	2 cut(s)	208, 923
BssECI	CCNNGG	4 cut(s)	27, 432, 657, 878
BssMI	GATC	3 cut(s)	102, 166, 421
BssNAI	GTATAC	1 cut(s)	408
BssT1I	CCWWGG	3 cut(s)	27, 432, 657
Bst1107I	GTATAC	1 cut(s)	408
Bst2UI	CCWGG	4 cut(s)	82, 507, 837, 879
Bst4CI	ACNGT	1 cut(s)	763
BstC8I	GCNNGC	2 cut(s)	485, 496
BstEII	GGTNACC	1 cut(s)	831
BstF5I	GGATG	2 cut(s)	858, 888
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	3 cut(s)	105, 169, 424
BstMAI	GTCTC	3 cut(s)	13, 127, 690
BstMBI	GATC	3 cut(s)	102, 166, 421
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 116
BstNI	CCWGG	4 cut(s)	82, 507, 837, 879
BstPI	GGTNACC	1 cut(s)	831
BstSCI	CCNGG	4 cut(s)	80, 505, 835, 877
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	237, 718, 740
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BstZ17I	GTATAC	1 cut(s)	408
BsuI	GTATCC	2 cut(s)	431, 474
BsuRI	GGCC	3 cut(s)	32, 75, 532
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	858, 888
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	1 cut(s)	665
BveI	ACCTGC	1 cut(s)	578
Cac8I	GCNNGC	2 cut(s)	485, 496
Cfr13I	GGNCC	5 cut(s)	84, 206, 530, 839, 872
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	2 cut(s)	139, 515
CviAII	CATG	4 cut(s)	339, 562, 580, 817
CviQI	GTAC	2 cut(s)	139, 515
DpnI	GATC	3 cut(s)	104, 168, 423
DpnII	GATC	3 cut(s)	102, 166, 421
EaeI	YGGCCR	1 cut(s)	73
EciI	GGCGGA	2 cut(s)	76, 144
Ecl136II	GAGCTC	1 cut(s)	934
Eco130I	CCWWGG	3 cut(s)	27, 432, 657
Eco24I	GRGCYC	2 cut(s)	358, 936
Eco47I	GGWCC	4 cut(s)	84, 206, 839, 872
Eco53kI	GAGCTC	1 cut(s)	934
Eco57I	CTGAAG	3 cut(s)	396, 599, 867
Eco91I	GGTNACC	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	934
EcoO109I	RGGNCCY	1 cut(s)	530
EcoO65I	GGTNACC	1 cut(s)	831
EcoRII	CCWGG	4 cut(s)	80, 505, 835, 877
EcoT14I	CCWWGG	3 cut(s)	27, 432, 657
EcoT38I	GRGCYC	2 cut(s)	358, 936
ErhI	CCWWGG	3 cut(s)	27, 432, 657
FaeI	CATG	4 cut(s)	342, 565, 583, 820
FalI	AAGNNNNNCTT	4 cut(s)	204, 236, 425, 457
FaqI	GGGAC	1 cut(s)	825
FatI	CATG	4 cut(s)	338, 561, 579, 816
FblI	GTMKAC	2 cut(s)	144, 407
Fnu4HI	GCNGC	6 cut(s)	6, 54, 117, 251, 729, 732
FokI	GGATG	2 cut(s)	845, 895
FriOI	GRGCYC	2 cut(s)	358, 936
Fsp4HI	GCNGC	6 cut(s)	6, 54, 117, 251, 729, 732
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	6 cut(s)	6, 54, 117, 251, 729, 732
GsuI	CTGGAG	3 cut(s)	64, 672, 921
HaeIII	GGCC	3 cut(s)	32, 75, 532
HapII	CCGG	4 cut(s)	66, 72, 126, 170
Hin1II	CATG	4 cut(s)	342, 565, 583, 820
HindIII	AAGCTT	1 cut(s)	496
HinfI	GANTC	4 cut(s)	21, 132, 257, 428
HpaII	CCGG	4 cut(s)	66, 72, 126, 170
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	3 cut(s)	145, 408, 979
Hpy188I	TCNGA	7 cut(s)	18, 102, 166, 228, 293, 421, 847
Hpy188III	TCNNGA	6 cut(s)	179, 425, 467, 644, 689, 900
Hpy8I	GTNNAC	3 cut(s)	145, 408, 979
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	8 cut(s)	19, 55, 67, 100, 371, 464, 520, 742
HpyCH4III	ACNGT	1 cut(s)	763
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	218, 253, 494, 587, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 116
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	342, 565, 583, 820
Kzo9I	GATC	3 cut(s)	102, 166, 421
LmnI	GCTCC	2 cut(s)	74, 361
Lsp1109I	GCAGC	3 cut(s)	237, 718, 740
LweI	GCATC	1 cut(s)	361
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	4 cut(s)	394, 663, 831, 921
MalI	GATC	3 cut(s)	104, 168, 423
MboI	GATC	3 cut(s)	102, 166, 421
MboII	GAAGA	4 cut(s)	206, 577, 860, 980
MfeI	CAATTG	2 cut(s)	284, 360
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	3 cut(s)	112, 358, 936
MluCI	AATT	6 cut(s)	242, 284, 360, 389, 742, 983
MlyI	GAGTC	3 cut(s)	15, 251, 437
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	6 cut(s)	353, 619, 785, 853, 885, 896
MroXI	GAANNNNTTC	1 cut(s)	800
MseI	TTAA	7 cut(s)	222, 246, 456, 500, 636, 705, 825
MslI	CAYNNNNRTG	2 cut(s)	578, 608
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	4 cut(s)	66, 72, 126, 170
MspR9I	CCNGG	4 cut(s)	82, 507, 837, 879
MunI	CAATTG	2 cut(s)	284, 360
MvaI	CCWGG	4 cut(s)	82, 507, 837, 879
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	50, 116
NdeII	GATC	3 cut(s)	102, 166, 421
NlaIII	CATG	4 cut(s)	342, 565, 583, 820
NlaIV	GGNNCC	4 cut(s)	70, 357, 531, 841
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	3 cut(s)	394, 663, 921
PaqCI	CACCTGC	1 cut(s)	578
PdmI	GAANNNNTTC	1 cut(s)	800
PfeI	GAWTC	1 cut(s)	132
Pfl23II	CGTACG	1 cut(s)	138
PkrI	GCNGC	6 cut(s)	7, 55, 118, 252, 730, 733
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	3 cut(s)	15, 251, 436
PpsI	GAGTC	3 cut(s)	15, 251, 436
Psp124BI	GAGCTC	1 cut(s)	936
Psp6I	CCWGG	4 cut(s)	80, 505, 835, 877
PspEI	GGTNACC	1 cut(s)	831
PspGI	CCWGG	4 cut(s)	80, 505, 835, 877
PspLI	CGTACG	1 cut(s)	138
PspN4I	GGNNCC	4 cut(s)	70, 357, 531, 841
PspPI	GGNCC	5 cut(s)	84, 206, 530, 839, 872
PsuI	RGATCY	1 cut(s)	421
PvuI	CGATCG	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	731
RsaI	GTAC	2 cut(s)	140, 516
RsaNI	GTAC	2 cut(s)	139, 515
RseI	CAYNNNNRTG	2 cut(s)	578, 608
SacI	GAGCTC	1 cut(s)	936
SaqAI	TTAA	7 cut(s)	222, 246, 456, 500, 636, 705, 825
SatI	GCNGC	6 cut(s)	6, 54, 117, 251, 729, 732
Sau3AI	GATC	3 cut(s)	102, 166, 421
Sau96I	GGNCC	5 cut(s)	84, 206, 530, 839, 872
SchI	GAGTC	3 cut(s)	15, 251, 437
ScrFI	CCNGG	4 cut(s)	82, 507, 837, 879
SduI	GDGCHC	3 cut(s)	112, 358, 936
SexAI	ACCWGGT	1 cut(s)	835
SfaNI	GCATC	1 cut(s)	361
SinI	GGWCC	4 cut(s)	84, 206, 839, 872
SmiMI	CAYNNNNRTG	2 cut(s)	578, 608
Sse9I	AATT	6 cut(s)	242, 284, 360, 389, 742, 983
SsiI	CCGC	9 cut(s)	42, 51, 54, 87, 94, 116, 129, 312, 870
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	936
StyD4I	CCNGG	4 cut(s)	80, 505, 835, 877
StyI	CCWWGG	3 cut(s)	27, 432, 657
TaaI	ACNGT	1 cut(s)	763
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	519
TasI	AATT	6 cut(s)	242, 284, 360, 389, 742, 983
TatI	WGTACW	1 cut(s)	514
TauI	GCSGC	2 cut(s)	56, 119
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	7 cut(s)	222, 246, 456, 500, 636, 705, 825
Tru9I	TTAA	7 cut(s)	222, 246, 456, 500, 636, 705, 825
TscAI	CASTG	1 cut(s)	672
TseFI	GTSAC	3 cut(s)	394, 663, 921
TseI	GCWGC	4 cut(s)	5, 250, 728, 731
Tsp45I	GTSAC	3 cut(s)	394, 663, 921
TspDTI	ATGAA	4 cut(s)	198, 327, 578, 793
TspRI	CASTG	1 cut(s)	672
VpaK11BI	GGWCC	4 cut(s)	84, 206, 839, 872
XapI	RAATTY	3 cut(s)	242, 389, 983
XbaI	TCTAGA	1 cut(s)	178
XmiI	GTMKAC	2 cut(s)	144, 407
XmnI	GAANNNNTTC	1 cut(s)	800
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.