Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005510.1

Orthogroup ID

OG0009480

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 897

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005510.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 394 bp

tggtataactcctatgcttcaggtcattgaggctatacttaaaaatcctgatgacacaaccaaggtgtcgctggtttatgctaatgtctcaccagatgacatactgcttaaacagaaacttgacatacttgcagctagccaccctaatttgaaggtgttttacacagtagataatccaacaaagagttggaaaggaggtaaaggctacatatcaaaggacatggcaattaaaggcttacctggtccagctgaagatactctcatctttgtatgcggtcctcctggaatgatggaacacatatctggtggcaaggctaaagactattcacaaggagagctcaggggcatactaaaagaacttggttacacagaagaaatggtttacaaattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

130

Amino Acids

14.22

Weight (kDa)

6.13

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20080
fragaria_vesca	FvH4_1g03580
malus_domestica	MD00G1107200.v1.1 MD02G1035100.v1.1
prunus_persica	Prupe.7G239800_v2.0.a1
pyrus_communis	pycom02g02870 pycom02g02890 pycom02g02910 pycom15g15760 pycom810g00010 pycom810g00030
rosa_chinensis	RchiOBHm_Chr2g0089111
rosa_laevigata	RLG00000015992
rosa_multiflora	Rmu_sc0003668.1_g000001 Rmu_sc0005510.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152240
rosa_rugosa	Rorug01G0487500
rosa_samantha	Rh2AG043000 Rh2BG041500 Rh2CG043100 Rh2DG042100
rosa_wichuraiana	Rw2G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	239, 281
AluBI	AGCT	3 cut(s)	135, 249, 338
AluI	AGCT	3 cut(s)	135, 249, 338
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	132
ApoI	RAATTY	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	243, 276
AsuHPI	GGTGA	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	243, 276
BanII	GRGCYC	1 cut(s)	340
BarI	GAAGNNNNNNTAC	2 cut(s)	144, 176
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	2 cut(s)	241, 283
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	136
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	2 cut(s)	241, 283
Bme18I	GGWCC	2 cut(s)	243, 276
BmgT120I	GGNCC	2 cut(s)	243, 276
BmrFI	CCNGG	2 cut(s)	241, 283
BmtI	GCTAGC	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	241, 283
BseDI	CCNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	340
BspACI	CCGC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	241, 283
Bst4CI	ACNGT	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	92
BstNI	CCWGG	2 cut(s)	241, 283
BstSCI	CCNGG	2 cut(s)	239, 281
BstV1I	GCAGC	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	243, 276
CsiI	ACCWGGT	1 cut(s)	239
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	8 cut(s)	33, 135, 139, 205, 235, 249, 315, 338
CviKI_1	RGCY	8 cut(s)	33, 135, 139, 205, 235, 249, 315, 338
DdeI	CTNAG	1 cut(s)	339
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	243, 276
Eco53kI	GAGCTC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	239, 281
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	1 cut(s)	224
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	133
FspBI	CTAG	1 cut(s)	136
GluI	GCNGC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	224
Lsp1109I	GCAGC	1 cut(s)	144
MabI	ACCWGGT	1 cut(s)	239
MaeI	CTAG	1 cut(s)	136
MaeIII	GTNAC	1 cut(s)	363
MboII	GAAGA	2 cut(s)	264, 384
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	3 cut(s)	146, 226, 387
MmeI	TCCRAC	2 cut(s)	168, 201
MnlI	CCTC	3 cut(s)	23, 189, 289
MseI	TTAA	3 cut(s)	40, 109, 229
MspA1I	CMGCKG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	241, 283
MvaI	CCWGG	2 cut(s)	241, 283
NheI	GCTAGC	1 cut(s)	135
NlaIII	CATG	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	239, 281
PspGI	CCWGG	2 cut(s)	239, 281
PspPI	GGNCC	2 cut(s)	243, 276
PvuII	CAGCTG	1 cut(s)	249
SacI	GAGCTC	1 cut(s)	340
SaqAI	TTAA	3 cut(s)	40, 109, 229
SatI	GCNGC	1 cut(s)	133
Sau96I	GGNCC	2 cut(s)	243, 276
ScrFI	CCNGG	2 cut(s)	241, 283
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	8 cut(s)	25, 67, 137, 157, 200, 242, 251, 340
SexAI	ACCWGGT	1 cut(s)	239
SinI	GGWCC	2 cut(s)	243, 276
Sse9I	AATT	3 cut(s)	146, 226, 387
SsiI	CCGC	1 cut(s)	274
SspMI	CTAG	1 cut(s)	136
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	239, 281
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	167
TasI	AATT	3 cut(s)	146, 226, 387
Tru1I	TTAA	3 cut(s)	40, 109, 229
Tru9I	TTAA	3 cut(s)	40, 109, 229
TseI	GCWGC	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	243, 276
XapI	RAATTY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	2 cut(s)	68, 184
XspI	CTAG	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.