Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002475

Physical Location & Seq

Genomic Coordinates Forward (+)

57313006 .. 57316570

Gene Structure 3565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0487500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGAGGATCCTCCGATTACTTCATCGCAGCAGCGTGCGGGAATTTTGTGGTGGTCTGAATTGGGGTTTGGCGGGAAGAGGTGTAATTGTAAAGGACAAAGCTTTTCAAAACTTGAACTCCTCTCAACTCTATCTCCATGGTGCAACAGTTGCAGAATCACTGTCTGGACTTGCGGTTTATGTTAGAGGAAATGTCACCGGAGAAGCTTGTAAAATTTCCAAGCCGCAGTTCGGCAAACTTTTAAAACAGGTTACGAATCACATATCATCCATGTCAAACATATATGTCCATGATGGGGCAGTTGGTTCATCACTCAAAGCTGGTGCAAAAGTTCGCGTTATAAGTGATAGCCCATCTGCTGTATTGTCACTTTCCAGCATTCTCTGGGGGACACCCACCCGTGCAGTCTCTCATGATTCTCGTCCTTTAACAGTTTATGTGGCTACTTCTATAAGTCCAGACATTGGAGACATTATTGGCCTTGAATTGAAAGGAGAAAATGCACTTATAGCTGCTGATATTGAGCGTTCTTCACTTGTTTTATGTGGCAATGCCTTCTCAGATTCAAATGCAACTAAACAAGCACTAGCTGCCTTGTCCGGACCTGTTATATTTGCCCGAAGAGGCCTTCCCCTATCTGCAAGGCTTTTAGTGTTTGGTGATTCTGTGCTTCTTTTATTTGCACCAGAAGATACCATTAAGGGGTGTGGAGATCTGTTGGTGCCAGGAGATATAGGTGTTATTCTTTCTTCTGAAGCTGTTGCCCCATTGTTTCAAACTGGAAGCTCTGGTAGCTCAAATCTATTCAAGTTGCCAGCTGCTGTAGTCCTTGCAACTTTTGACAGTTCTGGTGTTATACCTTCTGTATCAAAGCTTGCACCTGGCCAGGCAGCTTATCACTTCCTGGCTGGTTATCAAAATGGGAAGTTCATGCCTGCATACAGCAAAGGCCCTTCATCTATTGACCTGTTGGAACTAGCGAAGGAGTTTCTGTTGAAGTTGAAAGATGACCGGATCTCATCCTACCTGGTTAATGCCAATGGAGGAGAAAAGGGTGCAACTGGCAAAGATTTTGCTCGGTTGGTGGAATCAACTCTGTCAAATAACATCCCACCGTTCCAAGCAAAAGGTGGGAATCTTCAAGACACATACAAGAGCTTCTTATCTAGCAGATTTGGAGAAGTGCCAGAAGAATTCTCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

401

Amino Acids

42.28

Weight (kDa)

8.89

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	268 - 306	4.5e-08	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15410 AT1G15410
fragaria_vesca	FvH4_1g03590 FvH4_1g03590 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270
malus_domestica	MD02G1035500.v1.1 MD17G1205400.v1.1 MD17G1205900.v1.1
prunus_persica	Prupe.3G081000_v2.0.a1 Prupe.7G239700_v2.0.a1 Prupe.7G239700_v2.0.a1
pyrus_communis	pycom02g02920 pycom17g20920
rosa_chinensis	RchiOBHm_Chr2g0089121 RchiOBHm_Chr2g0136511
rosa_laevigata	RLG00000015993 RLG00000019538
rosa_multiflora	Rmu_sc0012034.1_g000001 Rmu_sc0016750.1_g000005 Rmu_sc0035394.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108210 Rroxscaffold_2G00152230
rosa_rugosa	Rorug01G0487500 Rorug02G0331500 Rorug02G0331600
rosa_samantha	Rh2AG043100 Rh2AG382400 Rh2BG041600 Rh2BG389000 Rh2CG043300 Rh2CG368700 Rh2DG042300 Rh2DG405700
rosa_wichuraiana	Rw2G003450 Rw2G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	721
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccII	CGCG	1 cut(s)	336
AccIII	TCCGGA	1 cut(s)	599
AciI	CCGC	4 cut(s)	37, 71, 173, 224
AclWI	GGATC	2 cut(s)	14, 1022
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	3 cut(s)	41, 213, 1193
AcuI	CTGAAG	1 cut(s)	774
AfiI	CCNNNNNNNGG	4 cut(s)	230, 295, 464, 702
AjnI	CCWGG	5 cut(s)	724, 880, 885, 903, 1026
AjuI	GAANNNNNNNTTGG	4 cut(s)	50, 82, 212, 244
Alw26I	GTCTC	2 cut(s)	412, 462
AlwI	GGATC	2 cut(s)	14, 1022
AlwNI	CAGNNNCTG	1 cut(s)	821
Aor13HI	TCCGGA	1 cut(s)	599
AoxI	GGCC	4 cut(s)	478, 625, 883, 949
ApeKI	GCWGC	6 cut(s)	27, 30, 512, 590, 818, 890
ApoI	RAATTY	3 cut(s)	41, 213, 1193
AspS9I	GGNCC	2 cut(s)	602, 950
AsuHPI	GGTGA	2 cut(s)	187, 671
AvaII	GGWCC	1 cut(s)	602
BalI	TGGCCA	1 cut(s)	885
BamHI	GGATCC	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	721
BbvI	GCAGC	6 cut(s)	39, 42, 499, 577, 805, 902
BccI	CCATC	2 cut(s)	287, 361
BciT130I	CCWGG	5 cut(s)	726, 882, 887, 905, 1028
BcoDI	GTCTC	2 cut(s)	412, 462
BfaI	CTAG	3 cut(s)	587, 977, 1167
BfmI	CTRYAG	1 cut(s)	822
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	7 cut(s)	28, 31, 224, 513, 591, 819, 891
BlsI	GCNGC	7 cut(s)	29, 32, 225, 514, 592, 820, 892
Bme1390I	CCNGG	5 cut(s)	726, 882, 887, 905, 1028
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	2 cut(s)	602, 950
BmiI	GGNNCC	2 cut(s)	8, 723
BmrFI	CCNGG	5 cut(s)	726, 882, 887, 905, 1028
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	3 cut(s)	197, 599, 1011
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 117, 131, 147, 977, 1007
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 295, 464, 702
Bse1I	ACTGG	2 cut(s)	784, 1066
Bse3DI	GCAATG	1 cut(s)	556
BseAI	TCCGGA	1 cut(s)	599
BseBI	CCWGG	5 cut(s)	726, 882, 887, 905, 1028
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	266, 1019, 1107
BseLI	CCNNNNNNNGG	4 cut(s)	230, 295, 464, 702
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	2 cut(s)	784, 1066
BseRI	GAGGAG	2 cut(s)	109, 1059
BseXI	GCAGC	6 cut(s)	39, 42, 499, 577, 805, 902
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	4 cut(s)	480, 627, 885, 951
BshNI	GGYRCC	1 cut(s)	721
BsiSI	CCGG	3 cut(s)	198, 600, 1012
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	4 cut(s)	230, 295, 464, 702
BsmAI	GTCTC	2 cut(s)	412, 462
BsmFI	GGGAC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	4 cut(s)	480, 627, 885, 951
Bsp13I	TCCGGA	1 cut(s)	599
Bsp143I	GATC	3 cut(s)	6, 712, 1014
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	4 cut(s)	37, 71, 173, 224
BspANI	GGCC	4 cut(s)	480, 627, 885, 951
BspCNI	CTCAG	1 cut(s)	572
BspEI	TCCGGA	1 cut(s)	599
BspFNI	CGCG	1 cut(s)	336
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	8, 723
BspPI	GGATC	2 cut(s)	14, 1022
BspT107I	GGYRCC	1 cut(s)	721
BsrDI	GCAATG	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	784, 1066
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	3 cut(s)	6, 712, 1014
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	5 cut(s)	726, 882, 887, 905, 1028
Bst4CI	ACNGT	5 cut(s)	148, 162, 433, 845, 1116
Bst6I	CTCTTC	2 cut(s)	70, 616
BstAPI	GCANNNNNTGC	2 cut(s)	149, 590
BstC8I	GCNNGC	4 cut(s)	35, 816, 876, 936
BstDEI	CTNAG	1 cut(s)	559
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	3 cut(s)	266, 1019, 1107
BstFNI	CGCG	1 cut(s)	336
BstKTI	GATC	3 cut(s)	9, 715, 1017
BstMAI	GTCTC	2 cut(s)	412, 462
BstMBI	GATC	3 cut(s)	6, 712, 1014
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 509, 590, 792
BstNI	CCWGG	5 cut(s)	726, 882, 887, 905, 1028
BstSCI	CCNGG	5 cut(s)	724, 880, 885, 903, 1026
BstSFI	CTRYAG	1 cut(s)	822
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	6 cut(s)	39, 42, 499, 577, 805, 902
BstX2I	RGATCY	3 cut(s)	6, 712, 1014
BstYI	RGATCY	3 cut(s)	6, 712, 1014
BsuRI	GGCC	4 cut(s)	480, 627, 885, 951
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	8
BtsCI	GGATG	3 cut(s)	266, 1019, 1107
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	4 cut(s)	35, 816, 876, 936
CaiI	CAGNNNCTG	1 cut(s)	821
CciI	TCATGA	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	602, 950
CsiI	ACCWGGT	1 cut(s)	1026
CviAII	CATG	5 cut(s)	137, 271, 290, 413, 931
DdeI	CTNAG	1 cut(s)	559
DpnI	GATC	3 cut(s)	8, 714, 1016
DpnII	GATC	3 cut(s)	6, 712, 1014
DraI	TTTAAA	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	883
Eam1104I	CTCTTC	2 cut(s)	70, 616
EarI	CTCTTC	2 cut(s)	70, 616
Eco130I	CCWWGG	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	774
EcoO109I	RGGNCCY	1 cut(s)	950
EcoRI	GAATTC	1 cut(s)	1193
EcoRII	CCWGG	5 cut(s)	724, 880, 885, 903, 1026
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	5 cut(s)	140, 274, 293, 416, 934
FalI	AAGNNNNNCTT	2 cut(s)	1145, 1177
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	5 cut(s)	136, 270, 289, 412, 930
FauI	CCCGC	2 cut(s)	30, 64
Fnu4HI	GCNGC	7 cut(s)	28, 31, 224, 513, 591, 819, 891
FokI	GGATG	3 cut(s)	253, 1006, 1094
Fsp4HI	GCNGC	7 cut(s)	28, 31, 224, 513, 591, 819, 891
FspBI	CTAG	3 cut(s)	587, 977, 1167
GluI	GCNGC	7 cut(s)	28, 31, 224, 513, 591, 819, 891
HaeIII	GGCC	4 cut(s)	480, 627, 885, 951
HapII	CCGG	3 cut(s)	198, 600, 1012
Hin1II	CATG	5 cut(s)	140, 274, 293, 416, 934
HindIII	AAGCTT	3 cut(s)	99, 204, 872
HinfI	GANTC	7 cut(s)	155, 256, 416, 563, 662, 1088, 1135
HpaII	CCGG	3 cut(s)	198, 600, 1012
HphI	GGTGA	2 cut(s)	187, 671
Hpy188I	TCNGA	5 cut(s)	14, 57, 562, 754, 1205
Hpy188III	TCNNGA	5 cut(s)	165, 413, 458, 600, 1142
HpyAV	CCTTC	5 cut(s)	565, 638, 870, 963, 976
HpyCH4III	ACNGT	5 cut(s)	148, 162, 433, 845, 1116
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 509, 590, 792
HpyF3I	CTNAG	1 cut(s)	559
Hsp92II	CATG	5 cut(s)	140, 274, 293, 416, 934
Kpn2I	TCCGGA	1 cut(s)	599
Kzo9I	GATC	3 cut(s)	6, 712, 1014
Lsp1109I	GCAGC	6 cut(s)	39, 42, 499, 577, 805, 902
MabI	ACCWGGT	1 cut(s)	1026
MaeI	CTAG	3 cut(s)	587, 977, 1167
MaeIII	GTNAC	3 cut(s)	193, 250, 366
MalI	GATC	3 cut(s)	8, 714, 1016
MboI	GATC	3 cut(s)	6, 712, 1014
MboII	GAAGA	7 cut(s)	87, 522, 633, 701, 741, 1130, 1202
MflI	RGATCY	3 cut(s)	6, 712, 1014
MlsI	TGGCCA	1 cut(s)	885
MluCI	AATT	6 cut(s)	41, 58, 84, 213, 485, 1193
MluNI	TGGCCA	1 cut(s)	885
MmeI	TCCRAC	1 cut(s)	951
MnlI	CCTC	6 cut(s)	20, 71, 130, 179, 617, 1037
Mox20I	TGGCCA	1 cut(s)	885
MroI	TCCGGA	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	885
MseI	TTAA	4 cut(s)	242, 428, 699, 1032
Msp20I	TGGCCA	1 cut(s)	885
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	3 cut(s)	198, 600, 1012
MspR9I	CCNGG	5 cut(s)	726, 882, 887, 905, 1028
Mva1269I	GAATGC	1 cut(s)	378
MvaI	CCWGG	5 cut(s)	726, 882, 887, 905, 1028
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	4 cut(s)	149, 509, 590, 792
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	3 cut(s)	6, 712, 1014
NlaIII	CATG	5 cut(s)	140, 274, 293, 416, 934
NlaIV	GGNNCC	2 cut(s)	8, 723
NmuCI	GTSAC	2 cut(s)	193, 366
PagI	TCATGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	627
PctI	GAATGC	1 cut(s)	378
PfeI	GAWTC	7 cut(s)	155, 256, 416, 563, 662, 1088, 1135
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	7 cut(s)	29, 32, 225, 514, 592, 820, 892
PsiI	TTATAA	1 cut(s)	341
Psp6I	CCWGG	5 cut(s)	724, 880, 885, 903, 1026
PspGI	CCWGG	5 cut(s)	724, 880, 885, 903, 1026
PspN4I	GGNNCC	2 cut(s)	8, 723
PspPI	GGNCC	2 cut(s)	602, 950
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	3 cut(s)	6, 712, 1014
PvuII	CAGCTG	1 cut(s)	818
SaqAI	TTAA	4 cut(s)	242, 428, 699, 1032
SatI	GCNGC	7 cut(s)	28, 31, 224, 513, 591, 819, 891
Sau3AI	GATC	3 cut(s)	6, 712, 1014
Sau96I	GGNCC	2 cut(s)	602, 950
ScrFI	CCNGG	5 cut(s)	726, 882, 887, 905, 1028
SexAI	ACCWGGT	1 cut(s)	1026
SfcI	CTRYAG	1 cut(s)	822
SinI	GGWCC	1 cut(s)	602
Sse9I	AATT	6 cut(s)	41, 58, 84, 213, 485, 1193
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	4 cut(s)	37, 71, 173, 224
SspMI	CTAG	3 cut(s)	587, 977, 1167
StuI	AGGCCT	1 cut(s)	627
StyD4I	CCNGG	5 cut(s)	724, 880, 885, 903, 1026
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	5 cut(s)	148, 162, 433, 845, 1116
TasI	AATT	6 cut(s)	41, 58, 84, 213, 485, 1193
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	7 cut(s)	155, 256, 416, 563, 662, 1088, 1135
Tru1I	TTAA	4 cut(s)	242, 428, 699, 1032
Tru9I	TTAA	4 cut(s)	242, 428, 699, 1032
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	193, 366
TseI	GCWGC	6 cut(s)	27, 30, 512, 590, 818, 890
Tsp45I	GTSAC	2 cut(s)	193, 366
TspDTI	ATGAA	4 cut(s)	11, 297, 919, 945
TspRI	CASTG	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	3 cut(s)	41, 213, 1193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1127
XspI	CTAG	3 cut(s)	587, 977, 1167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.