Prupe.3G081000_v2.0.a1

Asp/Glu/Hydantoin racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002475
Physical Location & Seq
Reverse (-)
6023848 .. 6030200
6353 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G081000.1

Sequence Viewer

Length: 1314 bp
ATGGCTTCTTCAAAGAAATGGGCAAGCATCATATCTTCCATTGCTTCATGTGTATATTTCCTTGTCATTATCCTTCAAGTTCCTCTTTTCAGGGTCCCCTGCACAGCTGGAATATGCAGAACACCAATAGAGGTAACATCCTCACAGTTAATTGCATGTGAACTTTTCCCTTTAGTTGTAGTGAAAGCCTTACTTTACCCTGGGGCCTTTGCAAATGCATTGATAAAAAACAGACCAATCCCAAGCTATGATAGCTTGAAATTGTATAACTTCACCAATGTGAAGGCAGCTGATGCAATCTCTGAGCTCCAGCGCCTAGAGGTTCTTGCTGGAAGCTACTTATCAGTGGCAGGAGCACTTCTAGGTCTCATTAAACCGGGGAGAATGAGCCTTTGCGGTATGCTTCTGATCGTATGGGGCTTAGTTAGGGAGATCATTTTGAGAAAATCAACAAGCACAATTCATGTGTATATCTACCCTGCAATGTCAATTGCCCTGTTTTCTGCCTTCTTGTCTATAACAAAGGATGTAAGGAGGATAATCCGTAGTTGCAGACTTGGTATAATAGGAGGGTTATCTGTTAATTCTACTCTTAATTTTTTGAGAAACCTTGTTAACTGGAGTTCAAGAGATGGAGAAAGTTGTCCTCCTTTTGTTCTTTGCTCTGATCCTGCGTTGAATAAGGAGCTGTTATTGATTGAGCGACCTTCTTTTCCTTATGTTAGCCGTAAAAATGAAGGTACAGAATTGGATCCTACTCTGATTGTGGAGAATTTGAGGAGTAAGAGGATTTATCTTGAAAATTCAGGATCTCGTTGCATCGTAATGCCTTGTCATATTTCACATTCTTGGCATGATCAAATTTCAGAGGGATGTTCTGTTCCTTTCCTTCACATGGGTGAGTGTGTTGCCAAGGAACTCAAGGAAGCAAAGTTGAAGCCACTTGAAGCTGGGAGTCCTTTGCAGATTGGAGTGCTTGCAACCTATGCAACTTTGAAAGCAGGATTCTATCAAGAGAAACTGCGGAATGAGGGTTTTGAGGTTGTTCTGCCAGATAAAGCAACCATGGAACACACTGTAATCCCTGCTTTTGAAGCCTTAAACAGAAAGGACACAGAAGGGGCACAGAATCTCTTGAGGATTGCAGTCCAGGTTCTTCTAGTGAGGGCTGCCAACGCTGTAATTCTTGCCTCCGATGATTTGCGGGATCTTCTTCCCCCGGATGATCCTCTTCTTAAGAAATGCATTGACCCTATGAATGCATTGGCCTGGTCAACCATAAAATGGGTTCAATCTGCTAAAGAAGGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_Glu_race

Protein Analysis

438

Amino Acids

48.14

Weight (kDa)

8.79

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1284
AciI CCGC 3 cut(s) 396, 1024, 1204
AclWI GGATC 6 cut(s) 662, 746, 759, 817, 1215, 1220
AcsI RAATTY 3 cut(s) 772, 802, 861
AfaI GTAC 2 cut(s) 742, 1309
AfiI CCNNNNNNNGG 2 cut(s) 895, 1284
AflII CTTAAG 1 cut(s) 1235
AjnI CCWGG 3 cut(s) 199, 1149, 1268
AleI CACNNNNGTG 2 cut(s) 278, 897
AloI GAACNNNNNNTCC 2 cut(s) 864, 896
AluBI AGCT 8 cut(s) 107, 246, 255, 290, 307, 336, 688, 950
AluI AGCT 8 cut(s) 107, 246, 255, 290, 307, 336, 688, 950
Alw21I GWGCWC 2 cut(s) 309, 358
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 6 cut(s) 662, 746, 759, 817, 1215, 1220
AoxI GGCC 2 cut(s) 204, 1266
ApeKI GCWGC 2 cut(s) 287, 1169
ApoI RAATTY 3 cut(s) 772, 802, 861
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 94, 204
AsuC2I CCSGG 2 cut(s) 378, 1220
AsuHPI GGTGA 2 cut(s) 265, 911
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 1126
BamHI GGATCC 1 cut(s) 751
BanII GRGCYC 1 cut(s) 309
Bbv12I GWGCWC 2 cut(s) 309, 358
BbvI GCAGC 2 cut(s) 299, 1156
BccI CCATC 1 cut(s) 626
BceAI ACGGC 1 cut(s) 711
BciT130I CCWGG 3 cut(s) 201, 1151, 1270
BclI TGATCA 1 cut(s) 856
BcnI CCSGG 2 cut(s) 378, 1220
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 3 cut(s) 317, 362, 1160
BfoI RGCGCY 1 cut(s) 316
BfrI CTTAAG 1 cut(s) 1235
BisI GCNGC 2 cut(s) 288, 1170
BlsI GCNGC 2 cut(s) 289, 1171
Bme1390I CCNGG 5 cut(s) 201, 378, 1151, 1220, 1270
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 94, 204
BmiI GGNNCC 4 cut(s) 95, 96, 205, 753
BmrFI CCNGG 5 cut(s) 201, 378, 1151, 1220, 1270
BmsI GCATC 3 cut(s) 36, 283, 828
BpmI CTGGAG 2 cut(s) 293, 640
BpuEI CTTGAG 2 cut(s) 905, 1156
BpuMI CCSGG 2 cut(s) 378, 1220
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 6 cut(s) 199, 200, 377, 912, 1065, 1218
Bsc4I CCNNNNNNNGG 2 cut(s) 895, 1284
Bse1I ACTGG 1 cut(s) 623
Bse3DI GCAATG 2 cut(s) 39, 489
BseBI CCWGG 3 cut(s) 201, 1151, 1270
BseDI CCNNGG 6 cut(s) 199, 200, 377, 912, 1065, 1218
BseGI GGATG 4 cut(s) 137, 532, 878, 1228
BseLI CCNNNNNNNGG 2 cut(s) 895, 1284
BseMI GCAATG 2 cut(s) 39, 489
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 623
BseRI GAGGAG 1 cut(s) 793
BseSI GKGCMC 1 cut(s) 1126
BseXI GCAGC 2 cut(s) 299, 1156
BseYI CCCAGC 1 cut(s) 950
BsgI GTGCAG 1 cut(s) 85
BshFI GGCC 2 cut(s) 206, 1268
BsiHKAI GWGCWC 2 cut(s) 309, 358
BsiSI CCGG 2 cut(s) 377, 1220
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 895, 1284
BsmAI GTCTC 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 1264
BsnI GGCC 2 cut(s) 206, 1268
Bso31I GGTCTC 1 cut(s) 371
Bsp1286I GDGCHC 3 cut(s) 309, 358, 1126
Bsp143I GATC 8 cut(s) 408, 432, 667, 751, 809, 856, 1207, 1225
Bsp19I CCATGG 1 cut(s) 1065
BspACI CCGC 3 cut(s) 396, 1024, 1204
BspANI GGCC 2 cut(s) 206, 1268
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 4 cut(s) 95, 96, 205, 753
BspPI GGATC 6 cut(s) 662, 746, 759, 817, 1215, 1220
BspTI CTTAAG 1 cut(s) 1235
BspTNI GGTCTC 1 cut(s) 371
BsrDI GCAATG 2 cut(s) 39, 489
BsrI ACTGG 1 cut(s) 623
BssECI CCNNGG 6 cut(s) 199, 200, 377, 912, 1065, 1218
BssMI GATC 8 cut(s) 408, 432, 667, 751, 809, 856, 1207, 1225
BssT1I CCWWGG 2 cut(s) 912, 1065
Bst2UI CCWGG 3 cut(s) 201, 1151, 1270
Bst4CI ACNGT 2 cut(s) 147, 1078
Bst6I CTCTTC 1 cut(s) 1236
BstAFI CTTAAG 1 cut(s) 1235
BstAPI GCANNNNNTGC 2 cut(s) 293, 986
BstC8I GCNNGC 2 cut(s) 25, 978
BstDEI CTNAG 2 cut(s) 303, 421
BstDSI CCRYGG 1 cut(s) 1065
BstF5I GGATG 4 cut(s) 137, 532, 878, 1228
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 8 cut(s) 411, 435, 670, 754, 812, 859, 1210, 1228
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 8 cut(s) 408, 432, 667, 751, 809, 856, 1207, 1225
BstMWI GCNNNNNNNGC 5 cut(s) 252, 293, 986, 1094, 1175
BstNI CCWGG 3 cut(s) 201, 1151, 1270
BstNSI RCATGY 1 cut(s) 159
BstSCI CCNGG 5 cut(s) 199, 376, 1149, 1218, 1268
BstSLI GKGCMC 1 cut(s) 1126
BstV1I GCAGC 2 cut(s) 299, 1156
BstX2I RGATCY 3 cut(s) 751, 809, 1207
BstYI RGATCY 3 cut(s) 751, 809, 1207
BsuRI GGCC 2 cut(s) 206, 1268
BtgI CCRYGG 1 cut(s) 1065
BtsCI GGATG 4 cut(s) 137, 532, 878, 1228
BtsIMutI CAGTG 2 cut(s) 351, 1074
Cac8I GCNNGC 2 cut(s) 25, 978
CfoI GCGC 1 cut(s) 315
Cfr13I GGNCC 2 cut(s) 94, 204
Csp6I GTAC 2 cut(s) 741, 1308
CviAII CATG 6 cut(s) 48, 156, 464, 854, 895, 1066
CviQI GTAC 2 cut(s) 741, 1308
DdeI CTNAG 2 cut(s) 303, 421
DpnI GATC 8 cut(s) 410, 434, 669, 753, 811, 858, 1209, 1227
DpnII GATC 8 cut(s) 408, 432, 667, 751, 809, 856, 1207, 1225
Eam1104I CTCTTC 1 cut(s) 1236
EarI CTCTTC 1 cut(s) 1236
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 2 cut(s) 912, 1065
Eco24I GRGCYC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 2 cut(s) 94, 204
EcoRII CCWGG 3 cut(s) 199, 1149, 1268
EcoT14I CCWWGG 2 cut(s) 912, 1065
EcoT22I ATGCAT 3 cut(s) 220, 1247, 1264
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 2 cut(s) 912, 1065
FaeI CATG 6 cut(s) 51, 159, 467, 857, 898, 1069
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 177, 209
FaqI GGGAC 1 cut(s) 80
FatI CATG 6 cut(s) 47, 155, 463, 853, 894, 1065
FauI CCCGC 1 cut(s) 1197
FbaI TGATCA 1 cut(s) 856
Fnu4HI GCNGC 2 cut(s) 288, 1170
FokI GGATG 4 cut(s) 124, 539, 885, 1235
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 2 cut(s) 288, 1170
FspBI CTAG 3 cut(s) 317, 362, 1160
GlaI GCGC 1 cut(s) 314
GluI GCNGC 2 cut(s) 288, 1170
GsaI CCCAGC 1 cut(s) 954
GsuI CTGGAG 2 cut(s) 293, 640
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 2 cut(s) 206, 1268
HapII CCGG 2 cut(s) 377, 1220
HhaI GCGC 1 cut(s) 315
Hin1II CATG 6 cut(s) 51, 159, 467, 857, 898, 1069
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HincII GTYRAC 2 cut(s) 616, 1275
HindII GTYRAC 2 cut(s) 616, 1275
HinfI GANTC 3 cut(s) 955, 1005, 1129
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 2 cut(s) 377, 1220
HphI GGTGA 2 cut(s) 265, 911
Hpy166II GTNNAC 3 cut(s) 161, 616, 1275
Hpy188I TCNGA 6 cut(s) 304, 408, 667, 762, 868, 1195
Hpy188III TCNNGA 5 cut(s) 627, 797, 807, 1013, 1135
Hpy8I GTNNAC 3 cut(s) 161, 616, 1275
HpyAV CCTTC 8 cut(s) 83, 277, 517, 717, 731, 899, 1112, 1298
HpyCH4III ACNGT 2 cut(s) 147, 1078
HpyF10VI GCNNNNNNNGC 5 cut(s) 252, 293, 986, 1094, 1175
HpyF3I CTNAG 2 cut(s) 303, 421
Hsp92II CATG 6 cut(s) 51, 159, 467, 857, 898, 1069
HspAI GCGC 1 cut(s) 313
KflI GGGWCCC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 856
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 8 cut(s) 408, 432, 667, 751, 809, 856, 1207, 1225
LmnI GCTCC 3 cut(s) 312, 353, 685
Lsp1109I GCAGC 2 cut(s) 299, 1156
LweI GCATC 3 cut(s) 36, 283, 828
MaeI CTAG 3 cut(s) 317, 362, 1160
MaeIII GTNAC 1 cut(s) 133
MalI GATC 8 cut(s) 410, 434, 669, 753, 811, 858, 1209, 1227
MboI GATC 8 cut(s) 408, 432, 667, 751, 809, 856, 1207, 1225
MboII GAAGA 5 cut(s) 27, 1148, 1202, 1205, 1223
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 3 cut(s) 751, 809, 1207
MhlI GDGCHC 3 cut(s) 309, 358, 1126
MlyI GAGTC 1 cut(s) 964
Mph1103I ATGCAT 3 cut(s) 220, 1247, 1264
MseI TTAA 7 cut(s) 149, 372, 582, 594, 615, 1100, 1236
MslI CAYNNNNRTG 3 cut(s) 278, 824, 897
MspA1I CMGCKG 2 cut(s) 107, 290
MspCI CTTAAG 1 cut(s) 1235
MspI CCGG 2 cut(s) 377, 1220
MspR9I CCNGG 5 cut(s) 201, 378, 1151, 1220, 1270
MunI CAATTG 1 cut(s) 489
Mva1269I GAATGC 1 cut(s) 1264
MvaI CCWGG 3 cut(s) 201, 1151, 1270
MwoI GCNNNNNNNGC 5 cut(s) 252, 293, 986, 1094, 1175
NciI CCSGG 2 cut(s) 378, 1220
NcoI CCATGG 1 cut(s) 1065
NdeII GATC 8 cut(s) 408, 432, 667, 751, 809, 856, 1207, 1225
NlaIII CATG 6 cut(s) 51, 159, 467, 857, 898, 1069
NlaIV GGNNCC 4 cut(s) 95, 96, 205, 753
NsiI ATGCAT 3 cut(s) 220, 1247, 1264
NspI RCATGY 1 cut(s) 159
OliI CACNNNNGTG 2 cut(s) 278, 897
PasI CCCWGGG 1 cut(s) 200
PctI GAATGC 1 cut(s) 1264
PfeI GAWTC 2 cut(s) 1005, 1129
PflMI CCANNNNNTGG 1 cut(s) 1284
PkrI GCNGC 2 cut(s) 289, 1171
PleI GAGTC 1 cut(s) 963
PpsI GAGTC 1 cut(s) 963
PpuMI RGGWCCY 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 3 cut(s) 199, 1149, 1268
PspFI CCCAGC 1 cut(s) 950
PspGI CCWGG 3 cut(s) 199, 1149, 1268
PspN4I GGNNCC 4 cut(s) 95, 96, 205, 753
PspPI GGNCC 2 cut(s) 94, 204
PspPPI RGGWCCY 1 cut(s) 94
PsuI RGATCY 3 cut(s) 751, 809, 1207
PvuII CAGCTG 2 cut(s) 107, 290
RsaI GTAC 2 cut(s) 742, 1309
RsaNI GTAC 2 cut(s) 741, 1308
RseI CAYNNNNRTG 3 cut(s) 278, 824, 897
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 7 cut(s) 149, 372, 582, 594, 615, 1100, 1236
SatI GCNGC 2 cut(s) 288, 1170
Sau3AI GATC 8 cut(s) 408, 432, 667, 751, 809, 856, 1207, 1225
Sau96I GGNCC 2 cut(s) 94, 204
SchI GAGTC 1 cut(s) 964
ScrFI CCNGG 5 cut(s) 201, 378, 1151, 1220, 1270
SduI GDGCHC 3 cut(s) 309, 358, 1126
SfaNI GCATC 3 cut(s) 36, 283, 828
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 3 cut(s) 278, 824, 897
SmlI CTYRAG 3 cut(s) 920, 1135, 1235
SmoI CTYRAG 3 cut(s) 920, 1135, 1235
SsiI CCGC 3 cut(s) 396, 1024, 1204
SspMI CTAG 3 cut(s) 317, 362, 1160
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 5 cut(s) 199, 376, 1149, 1218, 1268
StyI CCWWGG 2 cut(s) 912, 1065
TaaI ACNGT 2 cut(s) 147, 1078
TfiI GAWTC 2 cut(s) 1005, 1129
Tru1I TTAA 7 cut(s) 149, 372, 582, 594, 615, 1100, 1236
Tru9I TTAA 7 cut(s) 149, 372, 582, 594, 615, 1100, 1236
TscAI CASTG 2 cut(s) 351, 1081
TseI GCWGC 2 cut(s) 287, 1169
TspDTI ATGAA 4 cut(s) 36, 452, 750, 1271
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 2 cut(s) 351, 1081
Van91I CCANNNNNTGG 1 cut(s) 1284
Vha464I CTTAAG 1 cut(s) 1235
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 3 cut(s) 772, 802, 861
XceI RCATGY 1 cut(s) 159
XspI CTAG 3 cut(s) 317, 362, 1160
Zsp2I ATGCAT 3 cut(s) 220, 1247, 1264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.