Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035394.1

Orthogroup ID

OG0002475

Physical Location & Seq

Genomic Coordinates Forward (+)

887 .. 2224

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035394.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgtccctccacacccaaaatcgtcctactcttcttctaggtgttctaagcgaaaaccgaacccaaaacagaaccaaatcaagcccatctgtagctgtacaagtatcctcagtcctacaaactaatggaaaaagtggaaatgggaagggaaatctatctgatcagtctaagaaaggcatggctctgaaaaagtgccaagtccccaattttgtactaagccaaccaaacactgtgggcatcattggaggagtgtctgtatattctagcctgcttttcttggagaagcttgtttggtggagtctgaaagatggaggagaatgcccaccttttcttgtgtgcagtgatacaacacaatataaagagcttccgattcgcagtttgcttcaatcactcaagagaaaagctactgagatcaaatattcaagcagcaattgggccatcattgacagcttgtgtcaaaaaagggcatttctcgagaactctggagctcgatgcatagtcatgccatgccatctgtctcatgcttggcatgaacagatttctcaggactgttctttgagtttccttcatgttggtgagtgtgttgctagagagctcagagaagcgaagatgaggccactcgaaactgggagtaatgtgagaattggggtgcttgctgctgatgcaactttaactgctggtttttaccagcagaagctaagaaatcaggactttgaggtggttgtaccagacaaagcgacgatggaacatgttgtgactcctgcaatcgaggcattgaagagaagagacctggaaggagcacgaaatctgttaagaatcgcagtgcagattctgttggtgaggggtgtgaacatcgtcatcatcgcttctgatgaattgcagggtgttctgcctcatgatgatcctcttcttaagaaatgtattgatcccatggatgctttggccaggtcaaccataaaatgggcaaaggccacaggaaatggtggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_Glu_race

Protein Analysis

329

Amino Acids

36.11

Weight (kDa)

9.19

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15410 AT1G15410
fragaria_vesca	FvH4_1g03590 FvH4_1g03590 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270
malus_domestica	MD02G1035500.v1.1 MD17G1205400.v1.1 MD17G1205900.v1.1
prunus_persica	Prupe.3G081000_v2.0.a1 Prupe.7G239700_v2.0.a1 Prupe.7G239700_v2.0.a1
pyrus_communis	pycom02g02920 pycom17g20920
rosa_chinensis	RchiOBHm_Chr2g0089121 RchiOBHm_Chr2g0136511
rosa_laevigata	RLG00000015993 RLG00000019538
rosa_multiflora	Rmu_sc0012034.1_g000001 Rmu_sc0016750.1_g000005 Rmu_sc0035394.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108210 Rroxscaffold_2G00152230
rosa_rugosa	Rorug01G0487500 Rorug02G0331500 Rorug02G0331600
rosa_samantha	Rh2AG043100 Rh2AG382400 Rh2BG041600 Rh2BG389000 Rh2CG043300 Rh2CG368700 Rh2DG042300 Rh2DG405700
rosa_wichuraiana	Rw2G003450 Rw2G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	960
AclWI	GGATC	2 cut(s)	896, 920
AcoI	YGGCCR	1 cut(s)	942
AfaI	GTAC	3 cut(s)	99, 213, 726
AfiI	CCNNNNNNNGG	1 cut(s)	960
AflII	CTTAAG	1 cut(s)	911
AflIII	ACRYGT	1 cut(s)	748
AgsI	TTSAA	3 cut(s)	386, 423, 778
AjnI	CCWGG	2 cut(s)	789, 944
AluBI	AGCT	8 cut(s)	95, 286, 364, 404, 450, 488, 595, 697
AluI	AGCT	8 cut(s)	95, 286, 364, 404, 450, 488, 595, 697
Alw21I	GWGCWC	3 cut(s)	490, 597, 802
Alw26I	GTCTC	2 cut(s)	522, 780
AlwI	GGATC	2 cut(s)	896, 920
AlwNI	CAGNNNCTG	1 cut(s)	832
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	4 cut(s)	435, 614, 942, 969
ApeKI	GCWGC	2 cut(s)	426, 656
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	587, 850
AvaI	CYCGRG	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	944
BanII	GRGCYC	2 cut(s)	490, 597
Bbv12I	GWGCWC	3 cut(s)	490, 597, 802
BbvI	GCAGC	2 cut(s)	438, 643
BccI	CCATC	5 cut(s)	94, 302, 446, 519, 736
BciT130I	CCWGG	2 cut(s)	791, 946
BciVI	GTATCC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	522, 780
BfaI	CTAG	3 cut(s)	38, 264, 588
BfmI	CTRYAG	1 cut(s)	90
BfrI	CTTAAG	1 cut(s)	911
BfuI	GTATCC	1 cut(s)	115
BisI	GCNGC	2 cut(s)	427, 657
BlsI	GCNGC	2 cut(s)	428, 658
Bme1390I	CCNGG	2 cut(s)	791, 946
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	435
BmrFI	CCNGG	2 cut(s)	791, 946
BmrI	ACTGGG	1 cut(s)	636
BmsI	GCATC	4 cut(s)	246, 482, 652, 925
BmuI	ACTGGG	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	780
BsaJI	CCNNGG	1 cut(s)	930
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	960
Bse1I	ACTGG	1 cut(s)	631
BseBI	CCWGG	2 cut(s)	791, 946
BseDI	CCNNGG	1 cut(s)	930
BseGI	GGATG	1 cut(s)	940
BseLI	CCNNNNNNNGG	1 cut(s)	960
BseMII	CTCAG	4 cut(s)	123, 399, 557, 610
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	2 cut(s)	261, 327
BseXI	GCAGC	2 cut(s)	438, 643
BsgI	GTGCAG	2 cut(s)	358, 845
BshFI	GGCC	4 cut(s)	437, 616, 944, 971
BsiHKAI	GWGCWC	3 cut(s)	490, 597, 802
BsiHKCI	CYCGRG	1 cut(s)	473
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	960
BsmAI	GTCTC	2 cut(s)	522, 780
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	323
BsnI	GGCC	4 cut(s)	437, 616, 944, 971
Bso31I	GGTCTC	1 cut(s)	780
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	3 cut(s)	490, 597, 802
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	160, 411, 901, 925
Bsp19I	CCATGG	1 cut(s)	930
BspANI	GGCC	4 cut(s)	437, 616, 944, 971
BspCNI	CTCAG	4 cut(s)	122, 400, 556, 609
BspHI	TCATGA	1 cut(s)	895
BspPI	GGATC	2 cut(s)	896, 920
BspTI	CTTAAG	1 cut(s)	911
BspTNI	GGTCTC	1 cut(s)	780
BsrGI	TGTACA	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	1 cut(s)	930
BssMI	GATC	4 cut(s)	160, 411, 901, 925
BssT1I	CCWWGG	1 cut(s)	930
Bst2UI	CCWGG	2 cut(s)	791, 946
Bst4CI	ACNGT	2 cut(s)	232, 551
Bst6I	CTCTTC	4 cut(s)	36, 773, 778, 912
BstAFI	CTTAAG	1 cut(s)	911
BstAUI	TGTACA	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	269, 654
BstDEI	CTNAG	8 cut(s)	47, 109, 168, 215, 408, 543, 596, 698
BstDSI	CCRYGG	1 cut(s)	930
BstF5I	GGATG	1 cut(s)	940
BstKTI	GATC	4 cut(s)	163, 414, 904, 928
BstMAI	GTCTC	2 cut(s)	522, 780
BstMBI	GATC	4 cut(s)	160, 411, 901, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	662, 770
BstNI	CCWGG	2 cut(s)	791, 946
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	789, 944
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	438, 643
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	4 cut(s)	437, 616, 944, 971
BtgI	CCRYGG	1 cut(s)	930
BtgZI	GCGATG	1 cut(s)	847
BtsCI	GGATG	1 cut(s)	940
BtsI	GCAGTG	2 cut(s)	346, 828
BtsIMutI	CAGTG	3 cut(s)	228, 346, 828
Cac8I	GCNNGC	2 cut(s)	269, 654
CaiI	CAGNNNCTG	1 cut(s)	832
CciI	TCATGA	1 cut(s)	895
Cfr13I	GGNCC	1 cut(s)	435
Csp6I	GTAC	3 cut(s)	98, 212, 725
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	9 cut(s)	178, 502, 507, 521, 530, 569, 749, 896, 931
CviQI	GTAC	3 cut(s)	98, 212, 725
DdeI	CTNAG	8 cut(s)	47, 109, 168, 215, 408, 543, 596, 698
DpnI	GATC	4 cut(s)	162, 413, 903, 927
DpnII	GATC	4 cut(s)	160, 411, 901, 925
EaeI	YGGCCR	1 cut(s)	942
Eam1104I	CTCTTC	4 cut(s)	36, 773, 778, 912
EarI	CTCTTC	4 cut(s)	36, 773, 778, 912
Ecl136II	GAGCTC	2 cut(s)	488, 595
Eco130I	CCWWGG	1 cut(s)	930
Eco24I	GRGCYC	2 cut(s)	490, 597
Eco31I	GGTCTC	1 cut(s)	780
Eco53kI	GAGCTC	2 cut(s)	488, 595
Eco88I	CYCGRG	1 cut(s)	473
EcoICRI	GAGCTC	2 cut(s)	488, 595
EcoRII	CCWGG	2 cut(s)	789, 944
EcoT14I	CCWWGG	1 cut(s)	930
EcoT22I	ATGCAT	1 cut(s)	497
EcoT38I	GRGCYC	2 cut(s)	490, 597
ErhI	CCWWGG	1 cut(s)	930
FaeI	CATG	9 cut(s)	181, 505, 510, 524, 533, 572, 752, 899, 934
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	9 cut(s)	177, 501, 506, 520, 529, 568, 748, 895, 930
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	427, 657
FokI	GGATG	1 cut(s)	947
FriOI	GRGCYC	2 cut(s)	490, 597
Fsp4HI	GCNGC	2 cut(s)	427, 657
FspBI	CTAG	3 cut(s)	38, 264, 588
GluI	GCNGC	2 cut(s)	427, 657
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	4 cut(s)	437, 616, 944, 971
Hin1II	CATG	9 cut(s)	181, 505, 510, 524, 533, 572, 752, 899, 934
HincII	GTYRAC	1 cut(s)	951
HindII	GTYRAC	1 cut(s)	951
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	5 cut(s)	298, 370, 757, 816, 829
HphI	GGTGA	2 cut(s)	587, 850
Hpy166II	GTNNAC	2 cut(s)	850, 951
Hpy188I	TCNGA	6 cut(s)	160, 186, 303, 369, 599, 871
Hpy188III	TCNNGA	7 cut(s)	394, 473, 475, 483, 545, 707, 896
Hpy8I	GTNNAC	2 cut(s)	850, 951
Hpy99I	CGWCG	1 cut(s)	742
HpyAV	CCTTC	3 cut(s)	139, 575, 788
HpyCH4III	ACNGT	2 cut(s)	232, 551
HpyCH4V	TGCA	6 cut(s)	339, 495, 665, 764, 826, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	662, 770
HpyF3I	CTNAG	8 cut(s)	47, 109, 168, 215, 408, 543, 596, 698
Hsp92II	CATG	9 cut(s)	181, 505, 510, 524, 533, 572, 752, 899, 934
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	160, 411, 901, 925
LmnI	GCTCC	2 cut(s)	485, 797
Lsp1109I	GCAGC	2 cut(s)	438, 643
LweI	GCATC	4 cut(s)	246, 482, 652, 925
MaeI	CTAG	3 cut(s)	38, 264, 588
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	4 cut(s)	162, 413, 903, 927
MboI	GATC	4 cut(s)	160, 411, 901, 925
MboII	GAAGA	6 cut(s)	23, 26, 619, 790, 795, 899
MfeI	CAATTG	1 cut(s)	430
MhlI	GDGCHC	3 cut(s)	490, 597, 802
MlsI	TGGCCA	1 cut(s)	944
MluCI	AATT	4 cut(s)	205, 430, 642, 875
MluNI	TGGCCA	1 cut(s)	944
MlyI	GAGTC	2 cut(s)	307, 751
Mox20I	TGGCCA	1 cut(s)	944
Mph1103I	ATGCAT	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	944
MseI	TTAA	3 cut(s)	671, 812, 912
MslI	CAYNNNNRTG	2 cut(s)	500, 573
Msp20I	TGGCCA	1 cut(s)	944
MspCI	CTTAAG	1 cut(s)	911
MspR9I	CCNGG	2 cut(s)	791, 946
MunI	CAATTG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	2 cut(s)	791, 946
MwoI	GCNNNNNNNGC	2 cut(s)	662, 770
NcoI	CCATGG	1 cut(s)	930
NdeII	GATC	4 cut(s)	160, 411, 901, 925
NlaIII	CATG	9 cut(s)	181, 505, 510, 524, 533, 572, 752, 899, 934
NmuCI	GTSAC	1 cut(s)	754
NsiI	ATGCAT	1 cut(s)	497
NspI	RCATGY	1 cut(s)	752
PaeR7I	CTCGAG	1 cut(s)	473
PagI	TCATGA	1 cut(s)	895
PciI	ACATGT	1 cut(s)	748
PctI	GAATGC	1 cut(s)	323
PfeI	GAWTC	3 cut(s)	370, 816, 829
PflMI	CCANNNNNTGG	1 cut(s)	960
PkrI	GCNGC	2 cut(s)	428, 658
PleI	GAGTC	2 cut(s)	306, 751
PpsI	GAGTC	2 cut(s)	306, 751
PscI	ACATGT	1 cut(s)	748
Psp124BI	GAGCTC	2 cut(s)	490, 597
Psp6I	CCWGG	2 cut(s)	789, 944
PspGI	CCWGG	2 cut(s)	789, 944
PspPI	GGNCC	1 cut(s)	435
PstNI	CAGNNNCTG	1 cut(s)	832
RsaI	GTAC	3 cut(s)	99, 213, 726
RsaNI	GTAC	3 cut(s)	98, 212, 725
RseI	CAYNNNNRTG	2 cut(s)	500, 573
SacI	GAGCTC	2 cut(s)	490, 597
SaqAI	TTAA	3 cut(s)	671, 812, 912
SatI	GCNGC	2 cut(s)	427, 657
Sau3AI	GATC	4 cut(s)	160, 411, 901, 925
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	2 cut(s)	307, 751
ScrFI	CCNGG	2 cut(s)	791, 946
SduI	GDGCHC	3 cut(s)	490, 597, 802
SfaNI	GCATC	4 cut(s)	246, 482, 652, 925
SfcI	CTRYAG	1 cut(s)	90
Sfr274I	CTCGAG	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	500, 573
SmlI	CTYRAG	3 cut(s)	392, 473, 911
SmoI	CTYRAG	3 cut(s)	392, 473, 911
Sse9I	AATT	4 cut(s)	205, 430, 642, 875
SspI	AATATT	1 cut(s)	419
SspMI	CTAG	3 cut(s)	38, 264, 588
SstI	GAGCTC	2 cut(s)	490, 597
StyD4I	CCNGG	2 cut(s)	789, 944
StyI	CCWWGG	1 cut(s)	930
TaaI	ACNGT	2 cut(s)	232, 551
TaqI	TCGA	4 cut(s)	474, 490, 621, 768
TasI	AATT	4 cut(s)	205, 430, 642, 875
TatI	WGTACW	2 cut(s)	97, 211
TfiI	GAWTC	3 cut(s)	370, 816, 829
Tru1I	TTAA	3 cut(s)	671, 812, 912
Tru9I	TTAA	3 cut(s)	671, 812, 912
TscAI	CASTG	3 cut(s)	235, 346, 828
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	2 cut(s)	426, 656
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	3 cut(s)	546, 557, 888
TspRI	CASTG	3 cut(s)	235, 346, 828
Van91I	CCANNNNNTGG	1 cut(s)	960
Vha464I	CTTAAG	1 cut(s)	911
XceI	RCATGY	1 cut(s)	752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	937
XhoI	CTCGAG	1 cut(s)	473
XspI	CTAG	3 cut(s)	38, 264, 588
Zsp2I	ATGCAT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.