RLG00000015993

Asp/Glu/Hydantoin racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002475
Physical Location & Seq
Forward (+)
3048912 .. 3050253
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015993

Sequence Viewer

Length: 990 bp
ATGTCCGTCCACACCCAAAATCGTCCTACTCTTCTTCTCGGTGTTCTAAGCAAAAACCGAACCCAAAACAGAACCAAATCAAGAGCATCTCTAGCTGTACAAGTATCCTCAGTCCTACAAACTAACGGAAAAAGTGGAAATGGGAAAGGAAATCTATCTGATCAGTCTAAGAAAGGCATGGCTCTGAAAAAGTGTCAAGTCCCCAATTTTGTACTAAGCCAACCAAACACTGTGGGCATCATTGGAGGAGTGTCTGTATATTCTAGCCTGCTTTTCTTGGAGAAGCTTGTTTGGTGGAGTCTGAAAGATGGAGGTGAATGCCCACCTTTTCTTGTGTGCAGTGATACAACACAATATAAAGAGGTTCCGATTCGCAGTTTGTTTCAGTCACTCAAGAGAAAAGCTACTGAGATGAAATATTCAAGCAGCAATTGGGCCATCATTGACAGCTTGTGTCAAAAAAGGGCATTTCTCGAGAACTCTGGAGCTCGATGCATAGTCATGCCATGCCATCTGTCTCATGCTTGGCATGAACAGATTTCTCAGGACTGTTCTTTGAGTTTCCTTCATGTTGGTGAGTGTGTTGCTAGAGAGCTCAGAGAAGCGAAGATGAAGCCACTCGAAACTGGGAGTAATGTGAGAATTGGGGTGCTTGCTGCTGATGCAACTTTAACAGCTGGTTTTTACCAGCAGAAGCTAAGAAACCAGGACTTTGAGGTGGTTGTACCAGACAAAGCGACGATGGAACATGTTGTGACTCCTGCAATTGAGGCATTGAAGAGAAGAGACATGGAAGGGGCACGAAATCTGTTAAGAATCGCGGTGCAGATTCTGTTGGTGAGGGGTGTGAATATCGTCATCATCGCTTCTGATGAATTGCAGGGTATTCTGCCTTATGATGATCCTCTTCTTAAGAAATGTATTGATCCCATGGATGCTTTGGCCAGGTCAACCATAAAATGGGCAAAGGCCACAGGCAATGGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_Glu_race

Protein Analysis

330

Amino Acids

36.22

Weight (kDa)

9.38

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp_Glu_race PF01177 140 - 317 1.5e-23 Asp/Glu/Hydantoin racemase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 960
AccII CGCG 1 cut(s) 821
AciI CCGC 1 cut(s) 821
AclWI GGATC 2 cut(s) 896, 920
AcoI YGGCCR 1 cut(s) 942
AfaI GTAC 3 cut(s) 99, 213, 726
AfiI CCNNNNNNNGG 1 cut(s) 960
AflII CTTAAG 1 cut(s) 911
AflIII ACRYGT 1 cut(s) 748
AgsI TTSAA 2 cut(s) 423, 778
AjnI CCWGG 2 cut(s) 705, 944
AluBI AGCT 8 cut(s) 95, 286, 404, 450, 488, 595, 677, 697
AluI AGCT 8 cut(s) 95, 286, 404, 450, 488, 595, 677, 697
Alw21I GWGCWC 2 cut(s) 490, 597
Alw26I GTCTC 2 cut(s) 522, 780
AlwI GGATC 2 cut(s) 896, 920
AlwNI CAGNNNCTG 1 cut(s) 832
Ama87I CYCGRG 1 cut(s) 473
AoxI GGCC 3 cut(s) 435, 942, 969
ApeKI GCWGC 2 cut(s) 426, 656
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 3 cut(s) 326, 587, 850
AvaI CYCGRG 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 802
BalI TGGCCA 1 cut(s) 944
BanII GRGCYC 2 cut(s) 490, 597
Bbv12I GWGCWC 2 cut(s) 490, 597
BbvI GCAGC 2 cut(s) 438, 643
BccI CCATC 4 cut(s) 302, 446, 519, 736
BciT130I CCWGG 2 cut(s) 707, 946
BciVI GTATCC 1 cut(s) 115
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 522, 780
BfaI CTAG 3 cut(s) 92, 264, 588
BfrI CTTAAG 1 cut(s) 911
BfuI GTATCC 1 cut(s) 115
BisI GCNGC 2 cut(s) 427, 657
BlsI GCNGC 2 cut(s) 428, 658
Bme1390I CCNGG 2 cut(s) 707, 946
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 2 cut(s) 707, 946
BmrI ACTGGG 1 cut(s) 636
BmsI GCATC 5 cut(s) 95, 246, 482, 652, 925
BmuI ACTGGG 1 cut(s) 636
BpmI CTGGAG 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 930
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 960
Bse1I ACTGG 1 cut(s) 631
Bse3DI GCAATG 1 cut(s) 985
BseBI CCWGG 2 cut(s) 707, 946
BseDI CCNNGG 1 cut(s) 930
BseGI GGATG 1 cut(s) 940
BseLI CCNNNNNNNGG 1 cut(s) 960
BseMI GCAATG 1 cut(s) 985
BseMII CTCAG 4 cut(s) 123, 399, 557, 610
BseNI ACTGG 1 cut(s) 631
BseRI GAGGAG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 802
BseXI GCAGC 2 cut(s) 438, 643
BsgI GTGCAG 2 cut(s) 358, 845
Bsh1236I CGCG 1 cut(s) 821
BshFI GGCC 3 cut(s) 437, 944, 971
BsiHKAI GWGCWC 2 cut(s) 490, 597
BsiHKCI CYCGRG 1 cut(s) 473
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 960
BsmAI GTCTC 2 cut(s) 522, 780
BsmFI GGGAC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 323
BsnI GGCC 3 cut(s) 437, 944, 971
BsoBI CYCGRG 1 cut(s) 473
Bsp1286I GDGCHC 3 cut(s) 490, 597, 802
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 3 cut(s) 160, 901, 925
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 1 cut(s) 821
BspANI GGCC 3 cut(s) 437, 944, 971
BspCNI CTCAG 4 cut(s) 122, 400, 556, 609
BspFNI CGCG 1 cut(s) 821
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 2 cut(s) 896, 920
BspTI CTTAAG 1 cut(s) 911
BsrDI GCAATG 1 cut(s) 985
BsrGI TGTACA 1 cut(s) 97
BsrI ACTGG 1 cut(s) 631
BssECI CCNNGG 1 cut(s) 930
BssMI GATC 3 cut(s) 160, 901, 925
BssT1I CCWWGG 1 cut(s) 930
Bst2UI CCWGG 2 cut(s) 707, 946
Bst4CI ACNGT 2 cut(s) 232, 551
Bst6I CTCTTC 4 cut(s) 36, 773, 778, 912
BstAFI CTTAAG 1 cut(s) 911
BstAUI TGTACA 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 269, 654
BstDEI CTNAG 8 cut(s) 47, 109, 168, 215, 408, 543, 596, 698
BstDSI CCRYGG 1 cut(s) 930
BstF5I GGATG 1 cut(s) 940
BstFNI CGCG 1 cut(s) 821
BstKTI GATC 3 cut(s) 163, 904, 928
BstMAI GTCTC 2 cut(s) 522, 780
BstMBI GATC 3 cut(s) 160, 901, 925
BstMWI GCNNNNNNNGC 3 cut(s) 92, 662, 770
BstNI CCWGG 2 cut(s) 707, 946
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 2 cut(s) 705, 944
BstSLI GKGCMC 1 cut(s) 802
BstUI CGCG 1 cut(s) 821
BstV1I GCAGC 2 cut(s) 438, 643
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 3 cut(s) 437, 944, 971
BtgI CCRYGG 1 cut(s) 930
BtgZI GCGATG 1 cut(s) 847
BtsCI GGATG 1 cut(s) 940
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 228, 346
Cac8I GCNNGC 2 cut(s) 269, 654
CaiI CAGNNNCTG 1 cut(s) 832
Cfr13I GGNCC 1 cut(s) 435
Csp6I GTAC 3 cut(s) 98, 212, 725
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 9 cut(s) 178, 502, 507, 521, 530, 569, 749, 790, 931
CviQI GTAC 3 cut(s) 98, 212, 725
DdeI CTNAG 8 cut(s) 47, 109, 168, 215, 408, 543, 596, 698
DpnI GATC 3 cut(s) 162, 903, 927
DpnII GATC 3 cut(s) 160, 901, 925
EaeI YGGCCR 1 cut(s) 942
Eam1104I CTCTTC 4 cut(s) 36, 773, 778, 912
EarI CTCTTC 4 cut(s) 36, 773, 778, 912
Ecl136II GAGCTC 2 cut(s) 488, 595
Eco130I CCWWGG 1 cut(s) 930
Eco24I GRGCYC 2 cut(s) 490, 597
Eco53kI GAGCTC 2 cut(s) 488, 595
Eco88I CYCGRG 1 cut(s) 473
EcoICRI GAGCTC 2 cut(s) 488, 595
EcoRII CCWGG 2 cut(s) 705, 944
EcoT14I CCWWGG 1 cut(s) 930
EcoT22I ATGCAT 1 cut(s) 497
EcoT38I GRGCYC 2 cut(s) 490, 597
ErhI CCWWGG 1 cut(s) 930
FaeI CATG 9 cut(s) 181, 505, 510, 524, 533, 572, 752, 793, 934
FaqI GGGAC 1 cut(s) 185
FatI CATG 9 cut(s) 177, 501, 506, 520, 529, 568, 748, 789, 930
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 427, 657
FokI GGATG 1 cut(s) 947
FriOI GRGCYC 2 cut(s) 490, 597
Fsp4HI GCNGC 2 cut(s) 427, 657
FspBI CTAG 3 cut(s) 92, 264, 588
GluI GCNGC 2 cut(s) 427, 657
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 3 cut(s) 437, 944, 971
Hin1II CATG 9 cut(s) 181, 505, 510, 524, 533, 572, 752, 793, 934
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 5 cut(s) 298, 370, 757, 816, 829
HphI GGTGA 3 cut(s) 326, 587, 850
Hpy166II GTNNAC 2 cut(s) 10, 951
Hpy188I TCNGA 6 cut(s) 160, 186, 303, 369, 599, 871
Hpy188III TCNNGA 6 cut(s) 81, 394, 473, 475, 483, 545
Hpy8I GTNNAC 2 cut(s) 10, 951
Hpy99I CGWCG 1 cut(s) 742
HpyAV CCTTC 2 cut(s) 575, 788
HpyCH4III ACNGT 2 cut(s) 232, 551
HpyCH4V TGCA 6 cut(s) 339, 495, 665, 764, 826, 880
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 662, 770
HpyF3I CTNAG 8 cut(s) 47, 109, 168, 215, 408, 543, 596, 698
Hsp92II CATG 9 cut(s) 181, 505, 510, 524, 533, 572, 752, 793, 934
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 3 cut(s) 160, 901, 925
LmnI GCTCC 1 cut(s) 485
Lsp1109I GCAGC 2 cut(s) 438, 643
LweI GCATC 5 cut(s) 95, 246, 482, 652, 925
MaeI CTAG 3 cut(s) 92, 264, 588
MaeIII GTNAC 2 cut(s) 387, 754
MalI GATC 3 cut(s) 162, 903, 927
MboI GATC 3 cut(s) 160, 901, 925
MboII GAAGA 6 cut(s) 23, 26, 619, 790, 795, 899
MfeI CAATTG 2 cut(s) 430, 765
MhlI GDGCHC 3 cut(s) 490, 597, 802
MlsI TGGCCA 1 cut(s) 944
MluCI AATT 5 cut(s) 205, 430, 642, 765, 875
MluNI TGGCCA 1 cut(s) 944
MlyI GAGTC 2 cut(s) 307, 751
MnlI CCTC 8 cut(s) 118, 239, 305, 355, 709, 763, 834, 915
Mox20I TGGCCA 1 cut(s) 944
Mph1103I ATGCAT 1 cut(s) 497
MscI TGGCCA 1 cut(s) 944
MseI TTAA 3 cut(s) 671, 812, 912
MslI CAYNNNNRTG 2 cut(s) 500, 573
Msp20I TGGCCA 1 cut(s) 944
MspA1I CMGCKG 1 cut(s) 677
MspCI CTTAAG 1 cut(s) 911
MspR9I CCNGG 2 cut(s) 707, 946
MunI CAATTG 2 cut(s) 430, 765
Mva1269I GAATGC 1 cut(s) 323
MvaI CCWGG 2 cut(s) 707, 946
MvnI CGCG 1 cut(s) 821
MwoI GCNNNNNNNGC 3 cut(s) 92, 662, 770
NcoI CCATGG 1 cut(s) 930
NdeII GATC 3 cut(s) 160, 901, 925
NlaIII CATG 9 cut(s) 181, 505, 510, 524, 533, 572, 752, 793, 934
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 2 cut(s) 387, 754
NsiI ATGCAT 1 cut(s) 497
NspI RCATGY 1 cut(s) 752
PaeR7I CTCGAG 1 cut(s) 473
PciI ACATGT 1 cut(s) 748
PctI GAATGC 1 cut(s) 323
PfeI GAWTC 3 cut(s) 370, 816, 829
PflMI CCANNNNNTGG 1 cut(s) 960
PkrI GCNGC 2 cut(s) 428, 658
PleI GAGTC 2 cut(s) 306, 751
PpsI GAGTC 2 cut(s) 306, 751
PscI ACATGT 1 cut(s) 748
Psp124BI GAGCTC 2 cut(s) 490, 597
Psp6I CCWGG 2 cut(s) 705, 944
PspGI CCWGG 2 cut(s) 705, 944
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 1 cut(s) 435
PstNI CAGNNNCTG 1 cut(s) 832
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 3 cut(s) 99, 213, 726
RsaNI GTAC 3 cut(s) 98, 212, 725
RseI CAYNNNNRTG 2 cut(s) 500, 573
SacI GAGCTC 2 cut(s) 490, 597
SaqAI TTAA 3 cut(s) 671, 812, 912
SatI GCNGC 2 cut(s) 427, 657
Sau3AI GATC 3 cut(s) 160, 901, 925
Sau96I GGNCC 1 cut(s) 435
SchI GAGTC 2 cut(s) 307, 751
ScrFI CCNGG 2 cut(s) 707, 946
SduI GDGCHC 3 cut(s) 490, 597, 802
SfaNI GCATC 5 cut(s) 95, 246, 482, 652, 925
Sfr274I CTCGAG 1 cut(s) 473
SlaI CTCGAG 1 cut(s) 473
SmiMI CAYNNNNRTG 2 cut(s) 500, 573
SmlI CTYRAG 3 cut(s) 392, 473, 911
SmoI CTYRAG 3 cut(s) 392, 473, 911
Sse9I AATT 5 cut(s) 205, 430, 642, 765, 875
SsiI CCGC 1 cut(s) 821
SspI AATATT 1 cut(s) 419
SspMI CTAG 3 cut(s) 92, 264, 588
SstI GAGCTC 2 cut(s) 490, 597
StyD4I CCNGG 2 cut(s) 705, 944
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 2 cut(s) 232, 551
TaqI TCGA 3 cut(s) 474, 490, 621
TasI AATT 5 cut(s) 205, 430, 642, 765, 875
TatI WGTACW 2 cut(s) 97, 211
TfiI GAWTC 3 cut(s) 370, 816, 829
Tru1I TTAA 3 cut(s) 671, 812, 912
Tru9I TTAA 3 cut(s) 671, 812, 912
TscAI CASTG 2 cut(s) 235, 346
TseFI GTSAC 2 cut(s) 387, 754
TseI GCWGC 2 cut(s) 426, 656
Tsp45I GTSAC 2 cut(s) 387, 754
TspDTI ATGAA 5 cut(s) 428, 546, 557, 626, 888
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 2 cut(s) 235, 346
Van91I CCANNNNNTGG 1 cut(s) 960
Vha464I CTTAAG 1 cut(s) 911
XceI RCATGY 1 cut(s) 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 937
XhoI CTCGAG 1 cut(s) 473
XspI CTAG 3 cut(s) 92, 264, 588
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.