Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002475

Physical Location & Seq

Genomic Coordinates Reverse (-)

24923668 .. 24926970

Gene Structure 3303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1205900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAAGCAACGTCCTTGCGCCCTTCGAACTATCCTTTCTATAACTTGGGATTTGTAAATACACATAGAACCCTTTATATGACGATGTTGAATCCAGGTCAAGCCAACACTCCATCCCCAGTTCTCTTGCACACAGATGAAACTGGCCCGTTTTCAGAGTTTAAGAAGGGTTCTGGTTCAAGTACAGCTTTAAGAAACACTGCTCCCAGAGAATCATTTCCGGGTCTACCAAACACAGTTGGCATAATTGGAGGGCTATCTGTCGATTCTAGTGTTAAATTTCTGAGAAAACTTGTCAATTGGAGTTCAAGAGATGGAGAAAGTTGCCCTCCTTTTGTTCTTTGTTCTGACCATGTTTCAAATAAAGAGCTTTTATCAATTGAGAGAAGTTCTTTTCCTTCTGTCAGCAGTAAAAGTGATGGTCCTGAATTCGATCCTACTCCAATTGTGGAGAATTTGCTGAGTAAGAGGATTTTTCTTGAAAAATCGGGAGCTCGTTGCATTGTAATGCCTTGTCACATATCACATTCTTGGCATGATGAAATTTCTAAGGGATGTTCTGTTCCTTTTCTTCATATTGGTGAGTGTGTTGTCAAGGAGCTCAAGGAAGCAAAGTTGAAGCCGCTTGAAGCCGGAAGTCCTTTGCGGATTGGAGTGCTTGCAAGCCATGCAACTTTGACAGCAGGATTCTATCAGGAGAAACTGCAGAGAGAGGGATTTGAGGTTGTTCTGCCGGATAAAGTGACCATGGAATACTCTGTAATCCCTGCTATTGAAGCCTTAAACAGAAAGGACATAGAGGGGGCACAAAATCTCTTGAGGATCGCACTCCAGGTTCTTCTGGCGAGGGTTGTGAATTCTGTTATTCTTGCGTCCGATGATATGTTAGGTCTTCTTCACCTGGATCCTCTTCTTAAGAAATGCATTGATCCTATGGATGCCTTGGCTAGGTCAACCACAAGCTGGGCTCAGTCTACTAAAAAAGATGGTTCAAAGAAGAAAAAACTGAAGAAGAAAAAGGATCCAAATGCACCCAAAAGAGCGTTGTCTGGTTTCATGTTCTTCTCAAATATGGAGAGAGATAATGTCAAGAGAGAGAACCCTGGAATTGCGTTTGCTGATGTGGGGAGAGTGCTTGGAGAGAAGTGGAGAAAGATGTCTGCGGAGGAAAAGGAGCCATATGAAGCAAAGGCTCGTCAAGATAAAGAACGCTACAAGGATGAAATTAGAAGCTACAAGAACCCCAACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_Glu_race HMG_box

Protein Analysis

418

Amino Acids

46.36

Weight (kDa)

9.1

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp_Glu_race	PF01177	83 - 318	1.2e-24	Asp/Glu/Hydantoin racemase
HMG_box_2	PF09011	342 - 412	4.9e-17	HMG-box domain
HMG_box	PF00505	345 - 413	9.3e-22	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15410 AT1G15410
fragaria_vesca	FvH4_1g03590 FvH4_1g03590 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270
malus_domestica	MD02G1035500.v1.1 MD17G1205400.v1.1 MD17G1205900.v1.1
prunus_persica	Prupe.3G081000_v2.0.a1 Prupe.7G239700_v2.0.a1 Prupe.7G239700_v2.0.a1
pyrus_communis	pycom02g02920 pycom17g20920
rosa_chinensis	RchiOBHm_Chr2g0089121 RchiOBHm_Chr2g0136511
rosa_laevigata	RLG00000015993 RLG00000019538
rosa_multiflora	Rmu_sc0012034.1_g000001 Rmu_sc0016750.1_g000005 Rmu_sc0035394.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108210 Rroxscaffold_2G00152230
rosa_rugosa	Rorug01G0487500 Rorug02G0331500 Rorug02G0331600
rosa_samantha	Rh2AG043100 Rh2AG382400 Rh2BG041600 Rh2BG389000 Rh2CG043300 Rh2CG368700 Rh2DG042300 Rh2DG405700
rosa_wichuraiana	Rw2G003450 Rw2G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	963
AccI	GTMKAC	2 cut(s)	226, 974
AciI	CCGC	3 cut(s)	623, 646, 1163
AclWI	GGATC	7 cut(s)	428, 830, 899, 912, 923, 1016, 1029
AcsI	RAATTY	5 cut(s)	278, 428, 454, 543, 856
AcuI	CTGAAG	1 cut(s)	1028
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	948, 963
AflII	CTTAAG	1 cut(s)	914
AgsI	TTSAA	9 cut(s)	91, 180, 309, 360, 482, 619, 629, 776, 993
AjnI	CCWGG	4 cut(s)	94, 831, 900, 1102
AloI	GAACNNNNNNTCC	2 cut(s)	546, 578
AluBI	AGCT	6 cut(s)	188, 370, 494, 601, 963, 1233
AluI	AGCT	6 cut(s)	188, 370, 494, 601, 963, 1233
Alw21I	GWGCWC	2 cut(s)	496, 603
AlwI	GGATC	7 cut(s)	428, 830, 899, 912, 923, 1016, 1029
AoxI	GGCC	1 cut(s)	145
ApoI	RAATTY	5 cut(s)	278, 428, 454, 543, 856
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	146, 422
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	593, 890
AsuII	TTCGAA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	808
BamHI	GGATCC	2 cut(s)	904, 1021
BanII	GRGCYC	3 cut(s)	496, 603, 970
BbsI	GAAGAC	1 cut(s)	884
Bbv12I	GWGCWC	2 cut(s)	496, 603
BccI	CCATC	4 cut(s)	121, 308, 413, 980
BciT130I	CCWGG	4 cut(s)	96, 833, 902, 1104
BcnI	CCSGG	1 cut(s)	222
BfaI	CTAG	2 cut(s)	270, 948
BfmI	CTRYAG	1 cut(s)	704
BfrI	CTTAAG	1 cut(s)	914
BisI	GCNGC	1 cut(s)	623
BlsI	GCNGC	1 cut(s)	624
Bme1390I	CCNGG	5 cut(s)	96, 222, 833, 902, 1104
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	146, 422
BmiI	GGNNCC	3 cut(s)	906, 1023, 1176
BmrFI	CCNGG	5 cut(s)	96, 222, 833, 902, 1104
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	928
BmuI	ACTGGG	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	884
BpmI	CTGGAG	1 cut(s)	815
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	2 cut(s)	587, 838
BpuMI	CCSGG	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	747, 942, 1102
Bsc4I	CCNNNNNNNGG	2 cut(s)	948, 963
Bse1I	ACTGG	2 cut(s)	119, 148
BseBI	CCWGG	4 cut(s)	96, 833, 902, 1104
BseDI	CCNNGG	3 cut(s)	747, 942, 1102
BseGI	GGATG	4 cut(s)	113, 560, 943, 1225
BseLI	CCNNNNNNNGG	2 cut(s)	948, 963
BseMII	CTCAG	3 cut(s)	275, 452, 983
BseNI	ACTGG	2 cut(s)	119, 148
BseSI	GKGCMC	1 cut(s)	808
BseYI	CCCAGC	1 cut(s)	963
BshFI	GGCC	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	496, 603
BsiSI	CCGG	3 cut(s)	221, 633, 734
BslI	CCNNNNNNNGG	2 cut(s)	948, 963
BsnI	GGCC	1 cut(s)	147
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	4 cut(s)	496, 603, 808, 970
Bsp143I	GATC	5 cut(s)	433, 822, 904, 928, 1021
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	3 cut(s)	623, 646, 1163
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	3 cut(s)	276, 453, 982
BspLI	GGNNCC	3 cut(s)	906, 1023, 1176
BspMAI	CTGCAG	1 cut(s)	708
BspPI	GGATC	7 cut(s)	428, 830, 899, 912, 923, 1016, 1029
BspT104I	TTCGAA	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	914
BsrI	ACTGG	2 cut(s)	119, 148
BssECI	CCNNGG	3 cut(s)	747, 942, 1102
BssMI	GATC	5 cut(s)	433, 822, 904, 928, 1021
BssT1I	CCWWGG	2 cut(s)	747, 942
Bst2UI	CCWGG	4 cut(s)	96, 833, 902, 1104
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	915
BstAFI	CTTAAG	1 cut(s)	914
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	660, 664
BstDEI	CTNAG	4 cut(s)	284, 461, 549, 969
BstDSI	CCRYGG	1 cut(s)	747
BstENI	CCTNNNNNAGG	1 cut(s)	946
BstF5I	GGATG	4 cut(s)	113, 560, 943, 1225
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	5 cut(s)	436, 825, 907, 931, 1024
BstMBI	GATC	5 cut(s)	433, 822, 904, 928, 1021
BstMWI	GCNNNNNNNGC	2 cut(s)	668, 776
BstNI	CCWGG	4 cut(s)	96, 833, 902, 1104
BstSCI	CCNGG	5 cut(s)	94, 220, 831, 900, 1102
BstSFI	CTRYAG	1 cut(s)	704
BstSLI	GKGCMC	1 cut(s)	808
BstV2I	GAAGAC	1 cut(s)	884
BstX2I	RGATCY	2 cut(s)	904, 1021
BstYI	RGATCY	2 cut(s)	904, 1021
BsuRI	GGCC	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	747
BtsCI	GGATG	4 cut(s)	113, 560, 943, 1225
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	660, 664
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	146, 422
CseI	GACGC	1 cut(s)	861
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	6 cut(s)	353, 536, 668, 748, 1057, 1251
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	4 cut(s)	284, 461, 549, 969
DpnI	GATC	5 cut(s)	435, 824, 906, 930, 1023
DpnII	GATC	5 cut(s)	433, 822, 904, 928, 1021
Eam1104I	CTCTTC	1 cut(s)	915
EarI	CTCTTC	1 cut(s)	915
Ecl136II	GAGCTC	2 cut(s)	494, 601
Eco130I	CCWWGG	2 cut(s)	747, 942
Eco24I	GRGCYC	3 cut(s)	496, 603, 970
Eco47I	GGWCC	1 cut(s)	422
Eco53kI	GAGCTC	2 cut(s)	494, 601
Eco57I	CTGAAG	1 cut(s)	1028
EcoICRI	GAGCTC	2 cut(s)	494, 601
EcoNI	CCTNNNNNAGG	1 cut(s)	946
EcoRI	GAATTC	2 cut(s)	428, 856
EcoRII	CCWGG	4 cut(s)	94, 831, 900, 1102
EcoT14I	CCWWGG	2 cut(s)	747, 942
EcoT22I	ATGCAT	1 cut(s)	926
EcoT38I	GRGCYC	3 cut(s)	496, 603, 970
ErhI	CCWWGG	2 cut(s)	747, 942
FaeI	CATG	6 cut(s)	356, 539, 671, 751, 1060, 1254
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FatI	CATG	6 cut(s)	352, 535, 667, 747, 1056, 1250
FauNDI	CATATG	1 cut(s)	1180
FblI	GTMKAC	2 cut(s)	226, 974
Fnu4HI	GCNGC	1 cut(s)	623
FokI	GGATG	4 cut(s)	100, 567, 950, 1232
FriOI	GRGCYC	3 cut(s)	496, 603, 970
Fsp4HI	GCNGC	1 cut(s)	623
FspBI	CTAG	2 cut(s)	270, 948
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	623
GsaI	CCCAGC	1 cut(s)	967
GsuI	CTGGAG	1 cut(s)	815
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	3 cut(s)	221, 633, 734
HgaI	GACGC	1 cut(s)	861
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	6 cut(s)	356, 539, 671, 751, 1060, 1254
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HinfI	GANTC	4 cut(s)	91, 212, 266, 687
HpaII	CCGG	3 cut(s)	221, 633, 734
HphI	GGTGA	2 cut(s)	593, 890
Hpy166II	GTNNAC	3 cut(s)	227, 954, 975
Hpy188I	TCNGA	4 cut(s)	157, 285, 349, 877
Hpy188III	TCNNGA	8 cut(s)	309, 425, 479, 489, 695, 817, 1090, 1199
Hpy8I	GTNNAC	3 cut(s)	227, 954, 975
HpyAV	CCTTC	3 cut(s)	33, 160, 408
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	7 cut(s)	130, 501, 662, 671, 706, 924, 1031
HpyF10VI	GCNNNNNNNGC	2 cut(s)	668, 776
HpyF3I	CTNAG	4 cut(s)	284, 461, 549, 969
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	6 cut(s)	356, 539, 671, 751, 1060, 1254
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	5 cut(s)	433, 822, 904, 928, 1021
LmnI	GCTCC	4 cut(s)	208, 491, 598, 1174
LweI	GCATC	1 cut(s)	928
MaeI	CTAG	2 cut(s)	270, 948
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	515, 742
MalI	GATC	5 cut(s)	435, 824, 906, 930, 1023
MboI	GATC	5 cut(s)	433, 822, 904, 928, 1021
MboII	GAAGA	9 cut(s)	563, 830, 884, 887, 902, 1009, 1021, 1024, 1054
MfeI	CAATTG	3 cut(s)	298, 378, 444
MflI	RGATCY	2 cut(s)	904, 1021
MhlI	GDGCHC	4 cut(s)	496, 603, 808, 970
Mph1103I	ATGCAT	1 cut(s)	926
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	5 cut(s)	162, 191, 276, 782, 915
MslI	CAYNNNNRTG	3 cut(s)	135, 506, 579
MspCI	CTTAAG	1 cut(s)	914
MspI	CCGG	3 cut(s)	221, 633, 734
MspR9I	CCNGG	5 cut(s)	96, 222, 833, 902, 1104
MunI	CAATTG	3 cut(s)	298, 378, 444
MvaI	CCWGG	4 cut(s)	96, 833, 902, 1104
MwoI	GCNNNNNNNGC	2 cut(s)	668, 776
NciI	CCSGG	1 cut(s)	222
NcoI	CCATGG	1 cut(s)	747
NdeI	CATATG	1 cut(s)	1180
NdeII	GATC	5 cut(s)	433, 822, 904, 928, 1021
NlaIII	CATG	6 cut(s)	356, 539, 671, 751, 1060, 1254
NlaIV	GGNNCC	3 cut(s)	906, 1023, 1176
NmuCI	GTSAC	2 cut(s)	515, 742
NsiI	ATGCAT	1 cut(s)	926
NspV	TTCGAA	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	4 cut(s)	91, 212, 266, 687
PflMI	CCANNNNNTGG	1 cut(s)	963
PkrI	GCNGC	1 cut(s)	624
Psp124BI	GAGCTC	2 cut(s)	496, 603
Psp6I	CCWGG	4 cut(s)	94, 831, 900, 1102
PspFI	CCCAGC	1 cut(s)	963
PspGI	CCWGG	4 cut(s)	94, 831, 900, 1102
PspN4I	GGNNCC	3 cut(s)	906, 1023, 1176
PspPI	GGNCC	2 cut(s)	146, 422
PstI	CTGCAG	1 cut(s)	708
PsuI	RGATCY	2 cut(s)	904, 1021
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	3 cut(s)	135, 506, 579
SacI	GAGCTC	2 cut(s)	496, 603
SaqAI	TTAA	5 cut(s)	162, 191, 276, 782, 915
SatI	GCNGC	1 cut(s)	623
Sau3AI	GATC	5 cut(s)	433, 822, 904, 928, 1021
Sau96I	GGNCC	2 cut(s)	146, 422
ScrFI	CCNGG	5 cut(s)	96, 222, 833, 902, 1104
SduI	GDGCHC	4 cut(s)	496, 603, 808, 970
SfaNI	GCATC	1 cut(s)	928
SfcI	CTRYAG	1 cut(s)	704
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	3 cut(s)	135, 506, 579
SmlI	CTYRAG	3 cut(s)	602, 817, 914
SmoI	CTYRAG	3 cut(s)	602, 817, 914
SsiI	CCGC	3 cut(s)	623, 646, 1163
SspMI	CTAG	2 cut(s)	270, 948
SstI	GAGCTC	2 cut(s)	496, 603
StyD4I	CCNGG	5 cut(s)	94, 220, 831, 900, 1102
StyI	CCWWGG	2 cut(s)	747, 942
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	3 cut(s)	26, 264, 432
TatI	WGTACW	1 cut(s)	182
TauI	GCSGC	1 cut(s)	625
TfiI	GAWTC	4 cut(s)	91, 212, 266, 687
Tru1I	TTAA	5 cut(s)	162, 191, 276, 782, 915
Tru9I	TTAA	5 cut(s)	162, 191, 276, 782, 915
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	515, 742
Tsp45I	GTSAC	2 cut(s)	515, 742
TspDTI	ATGAA	6 cut(s)	153, 555, 563, 1045, 1197, 1236
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	963
Vha464I	CTTAAG	1 cut(s)	914
VpaK11BI	GGWCC	1 cut(s)	422
XagI	CCTNNNNNAGG	1 cut(s)	946
XapI	RAATTY	5 cut(s)	278, 428, 454, 543, 856
XmiI	GTMKAC	2 cut(s)	226, 974
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	270, 948
Zsp2I	ATGCAT	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.