AT1G15410

aspartate-glutamate racemase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002475
Physical Location & Seq
Forward (+)
5298324 .. 5300927
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15410.2

Sequence Viewer

Length: 993 bp
ATGTATCTTCAGATTTTCAACAACCCATCTCATGGCTTAGCTCATTTATGCTACTCTAGTCGGGTTTCGTGTAGGGTAAGACTGAGTCGTGTCCTTGCCATGCCACCGTCTTCAGTCCTCTTGCATATGGACGAAAGCAATGATCTTCCCAAGCCCAAGAAGGGTTTTTGTCTGAGTGAAGATTCGAGAAACAGTTTAAACAGTCTTCCTGCAGATTCTTTGCTTAGGCAGGCCAACACAGTGGGGATTATCGGAGGCGTTTCAACTGATTCCACTCTGAAATTTGTGAAGAAACTCGTGGATTGGAGCTCAAATGATGGTAAAAGCTCGTTACCTTTTGTGCTTTGCTCGGATCCTGCTCTCAACAAGGAGCTTCTCTTATACGAGGAAAACTCGTATCCTTCTCTTTACCATAGAGAAGAGAGTACTCCGGTTGATCCAAAGCTAATTGTGGAAAATCTAAGGAATAAGAGGAGATATCTTGAGAGGTGTGGAGCTAAATTAATCTTAATGCCCTGTCATATTGCACATATATGGTATGAAGAGGTATGTGAAGGGAGTTTAGTTCCTCTGCTTCACATGGGTGAATGCATTGCTAAAGAACTGCAAGAGGCAAAAATGAAGCCCCTTGAAGCTGGGAATCCTCTGCGTGTAGGTGTGATGGCCACTAGCGCCACGTTATCAGCAGGGTTCTACCAGGAGAAACTCCAAAGCAATGGATTTGAGGCTGTGCTTCCAGACAAGGCAACAATGGAGCACACGGTGATCCCATCCATAGAAGCAATGAAGAGAAAAGACATGGAAGGAGCACGGAACCTTCTGAGGATAGCGTTGCAGGTACTGCTAGTGCAGGCGGTAAACGTGGTGATGCTCGGGTCAGATGAGATGCGGGACCTCTTGCCTGGGGATGATCCTCTGCTAAAGAAGTGTGTTGATCCAATGGATGCACTAGCAAGGTCTGCCATCAAATGGGCAGAGAATAGATGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_Glu_race

Protein Analysis

330

Amino Acids

36.71

Weight (kDa)

6.71

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp_Glu_race PF01177 84 - 321 2.6e-27 Asp/Glu/Hydantoin racemase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 826
AccB7I CCANNNNNTGG 2 cut(s) 32, 969
AciI CCGC 2 cut(s) 854, 889
AclWI GGATC 6 cut(s) 347, 360, 431, 760, 905, 929
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 96
AdeI CACNNNGTG 1 cut(s) 763
AfaI GTAC 2 cut(s) 427, 840
AfiI CCNNNNNNNGG 3 cut(s) 32, 161, 969
AgsI TTSAA 3 cut(s) 19, 264, 632
AjnI CCWGG 2 cut(s) 696, 901
AleI CACNNNNGTG 1 cut(s) 582
AluBI AGCT 7 cut(s) 41, 309, 327, 373, 445, 497, 635
AluI AGCT 7 cut(s) 41, 309, 327, 373, 445, 497, 635
Alw21I GWGCWC 3 cut(s) 311, 759, 811
AlwI GGATC 6 cut(s) 347, 360, 431, 760, 905, 929
AlwNI CAGNNNCTG 1 cut(s) 841
Ama87I CYCGRG 1 cut(s) 872
AoxI GGCC 2 cut(s) 231, 663
ApoI RAATTY 1 cut(s) 281
AseI ATTAAT 1 cut(s) 503
AspLEI GCGC 1 cut(s) 674
AspS9I GGNCC 1 cut(s) 892
AsuHPI GGTGA 3 cut(s) 596, 775, 877
AvaI CYCGRG 1 cut(s) 872
AvaII GGWCC 1 cut(s) 892
BalI TGGCCA 1 cut(s) 665
BamHI GGATCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 311
BauI CACGAG 1 cut(s) 296
BbsI GAAGAC 2 cut(s) 102, 197
Bbv12I GWGCWC 3 cut(s) 311, 759, 811
BccI CCATC 5 cut(s) 34, 311, 655, 778, 971
BciT130I CCWGG 2 cut(s) 698, 903
BciVI GTATCC 1 cut(s) 408
BfaI CTAG 4 cut(s) 57, 669, 845, 950
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 675
BfuAI ACCTGC 1 cut(s) 826
BfuI GTATCC 1 cut(s) 408
BlpI GCTNAGC 1 cut(s) 37
BmcAI AGTACT 1 cut(s) 427
Bme1390I CCNGG 2 cut(s) 698, 903
Bme18I GGWCC 1 cut(s) 892
BmeT110I CYCGRG 1 cut(s) 872
BmgT120I GGNCC 1 cut(s) 892
BmiI GGNNCC 3 cut(s) 354, 815, 893
BmrFI CCNGG 2 cut(s) 698, 903
BmsI GCATC 4 cut(s) 858, 876, 934, 974
BpiI GAAGAC 2 cut(s) 102, 197
BplI GAGNNNNNCTC 2 cut(s) 377, 409
Bpu10I CCTNAGC 1 cut(s) 224
Bpu1102I GCTNAGC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 503
BsaJI CCNNGG 1 cut(s) 902
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 161, 969
Bse3DI GCAATG 4 cut(s) 145, 591, 721, 789
BseBI CCWGG 2 cut(s) 698, 903
BseDI CCNNGG 1 cut(s) 902
BseGI GGATG 3 cut(s) 770, 913, 949
BseLI CCNNNNNNNGG 3 cut(s) 32, 161, 969
BseMI GCAATG 4 cut(s) 145, 591, 721, 789
BseMII CTCAG 3 cut(s) 74, 164, 812
BseRI GAGGAG 1 cut(s) 487
BseYI CCCAGC 1 cut(s) 635
BsgI GTGCAG 1 cut(s) 869
BshFI GGCC 2 cut(s) 233, 665
BsiHKAI GWGCWC 3 cut(s) 311, 759, 811
BsiHKCI CYCGRG 1 cut(s) 872
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 905
BslI CCNNNNNNNGG 3 cut(s) 32, 161, 969
BsmFI GGGAC 1 cut(s) 905
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 2 cut(s) 233, 665
BsoBI CYCGRG 1 cut(s) 872
Bsp1286I GDGCHC 3 cut(s) 311, 759, 811
Bsp143I GATC 6 cut(s) 142, 352, 436, 765, 910, 934
Bsp1720I GCTNAGC 1 cut(s) 37
BspACI CCGC 2 cut(s) 854, 889
BspANI GGCC 2 cut(s) 233, 665
BspCNI CTCAG 3 cut(s) 75, 165, 813
BspLI GGNNCC 3 cut(s) 354, 815, 893
BspMAI CTGCAG 1 cut(s) 214
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 6 cut(s) 347, 360, 431, 760, 905, 929
BsrDI GCAATG 4 cut(s) 145, 591, 721, 789
BssECI CCNNGG 1 cut(s) 902
BssMI GATC 6 cut(s) 142, 352, 436, 765, 910, 934
BssSI CACGAG 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 296
Bst2UI CCWGG 2 cut(s) 698, 903
Bst4CI ACNGT 5 cut(s) 108, 194, 203, 241, 763
Bst6I CTCTTC 3 cut(s) 414, 537, 782
BstAPI GCANNNNNTGC 2 cut(s) 841, 959
BstC8I GCNNGC 2 cut(s) 231, 852
BstDEI CTNAG 6 cut(s) 37, 83, 173, 224, 461, 821
BstF5I GGATG 3 cut(s) 770, 913, 949
BstH2I RGCGCY 1 cut(s) 675
BstHHI GCGC 1 cut(s) 674
BstKTI GATC 6 cut(s) 145, 355, 439, 768, 913, 937
BstMBI GATC 6 cut(s) 142, 352, 436, 765, 910, 934
BstMWI GCNNNNNNNGC 3 cut(s) 671, 841, 959
BstNI CCWGG 2 cut(s) 698, 903
BstSCI CCNGG 2 cut(s) 696, 901
BstSFI CTRYAG 1 cut(s) 210
BstV2I GAAGAC 2 cut(s) 102, 197
BstX2I RGATCY 1 cut(s) 352
BstXI CCANNNNNNTGG 2 cut(s) 241, 716
BstYI RGATCY 1 cut(s) 352
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 2 cut(s) 233, 665
BtsCI GGATG 3 cut(s) 770, 913, 949
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 2 cut(s) 231, 852
CaiI CAGNNNCTG 1 cut(s) 841
CfoI GCGC 1 cut(s) 674
Cfr13I GGNCC 1 cut(s) 892
Csp6I GTAC 2 cut(s) 426, 839
CviAII CATG 4 cut(s) 32, 100, 580, 799
CviQI GTAC 2 cut(s) 426, 839
DdeI CTNAG 6 cut(s) 37, 83, 173, 224, 461, 821
DpnI GATC 6 cut(s) 144, 354, 438, 767, 912, 936
DpnII GATC 6 cut(s) 142, 352, 436, 765, 910, 934
DraI TTTAAA 1 cut(s) 198
DraIII CACNNNGTG 1 cut(s) 763
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 3 cut(s) 414, 537, 782
EarI CTCTTC 3 cut(s) 414, 537, 782
Ecl136II GAGCTC 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 311
Eco32I GATATC 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 892
Eco53kI GAGCTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 872
EcoICRI GAGCTC 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 892
EcoRII CCWGG 2 cut(s) 696, 901
EcoRV GATATC 1 cut(s) 479
EcoT22I ATGCAT 1 cut(s) 593
EcoT38I GRGCYC 1 cut(s) 311
FaeI CATG 4 cut(s) 35, 103, 583, 802
FaqI GGGAC 1 cut(s) 905
FatI CATG 4 cut(s) 31, 99, 579, 798
FauI CCCGC 1 cut(s) 882
FauNDI CATATG 1 cut(s) 126
FokI GGATG 3 cut(s) 757, 920, 956
FriOI GRGCYC 1 cut(s) 311
FspBI CTAG 4 cut(s) 57, 669, 845, 950
GlaI GCGC 1 cut(s) 673
GsaI CCCAGC 1 cut(s) 639
HaeII RGCGCY 1 cut(s) 675
HaeIII GGCC 2 cut(s) 233, 665
HapII CCGG 1 cut(s) 431
HhaI GCGC 1 cut(s) 674
Hin1II CATG 4 cut(s) 35, 103, 583, 802
Hin6I GCGC 1 cut(s) 672
HinP1I GCGC 1 cut(s) 672
HinfI GANTC 5 cut(s) 85, 182, 215, 269, 640
HpaII CCGG 1 cut(s) 431
HphI GGTGA 3 cut(s) 596, 775, 877
Hpy166II GTNNAC 1 cut(s) 859
Hpy188I TCNGA 7 cut(s) 12, 174, 254, 279, 352, 822, 880
Hpy188III TCNNGA 3 cut(s) 186, 482, 737
Hpy8I GTNNAC 1 cut(s) 859
HpyAV CCTTC 5 cut(s) 154, 411, 548, 797, 827
HpyCH4III ACNGT 5 cut(s) 108, 194, 203, 241, 763
HpyCH4IV ACGT 2 cut(s) 677, 861
HpyCH4V TGCA 8 cut(s) 124, 212, 527, 591, 607, 835, 850, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 671, 841, 959
HpyF3I CTNAG 6 cut(s) 37, 83, 173, 224, 461, 821
HpySE526I ACGT 2 cut(s) 677, 861
Hsp92II CATG 4 cut(s) 35, 103, 583, 802
HspAI GCGC 1 cut(s) 672
Kzo9I GATC 6 cut(s) 142, 352, 436, 765, 910, 934
LmnI GCTCC 5 cut(s) 306, 370, 494, 754, 806
LweI GCATC 4 cut(s) 858, 876, 934, 974
MaeI CTAG 4 cut(s) 57, 669, 845, 950
MaeII ACGT 2 cut(s) 677, 861
MaeIII GTNAC 1 cut(s) 330
MalI GATC 6 cut(s) 144, 354, 438, 767, 912, 936
MboI GATC 6 cut(s) 142, 352, 436, 765, 910, 934
MboII GAAGA 8 cut(s) 102, 137, 191, 197, 301, 431, 554, 799
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 3 cut(s) 311, 759, 811
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 3 cut(s) 281, 447, 500
MluNI TGGCCA 1 cut(s) 665
MlyI GAGTC 1 cut(s) 94
Mox20I TGGCCA 1 cut(s) 665
Mph1103I ATGCAT 1 cut(s) 593
MscI TGGCCA 1 cut(s) 665
MseI TTAA 4 cut(s) 197, 503, 509, 991
MslI CAYNNNNRTG 2 cut(s) 532, 582
Msp20I TGGCCA 1 cut(s) 665
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 698, 903
MssI GTTTAAAC 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 2 cut(s) 698, 903
MwoI GCNNNNNNNGC 3 cut(s) 671, 841, 959
NdeI CATATG 1 cut(s) 126
NdeII GATC 6 cut(s) 142, 352, 436, 765, 910, 934
NlaIII CATG 4 cut(s) 35, 103, 583, 802
NlaIV GGNNCC 3 cut(s) 354, 815, 893
NsiI ATGCAT 1 cut(s) 593
OliI CACNNNNGTG 1 cut(s) 582
PctI GAATGC 1 cut(s) 593
PfeI GAWTC 4 cut(s) 182, 215, 269, 640
PflFI GACNNNGTC 1 cut(s) 84
PflMI CCANNNNNTGG 2 cut(s) 32, 969
PleI GAGTC 1 cut(s) 93
PmeI GTTTAAAC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 93
PpuMI RGGWCCY 1 cut(s) 892
PshBI ATTAAT 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 892
Psp6I CCWGG 2 cut(s) 696, 901
PspFI CCCAGC 1 cut(s) 635
PspGI CCWGG 2 cut(s) 696, 901
PspN4I GGNNCC 3 cut(s) 354, 815, 893
PspPI GGNCC 1 cut(s) 892
PspPPI RGGWCCY 1 cut(s) 892
PstI CTGCAG 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 841
PsuI RGATCY 1 cut(s) 352
PsyI GACNNNGTC 1 cut(s) 84
RsaI GTAC 2 cut(s) 427, 840
RsaNI GTAC 2 cut(s) 426, 839
RseI CAYNNNNRTG 2 cut(s) 532, 582
SacI GAGCTC 1 cut(s) 311
SaqAI TTAA 4 cut(s) 197, 503, 509, 991
Sau3AI GATC 6 cut(s) 142, 352, 436, 765, 910, 934
Sau96I GGNCC 1 cut(s) 892
ScaI AGTACT 1 cut(s) 427
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 698, 903
SduI GDGCHC 3 cut(s) 311, 759, 811
SfaNI GCATC 4 cut(s) 858, 876, 934, 974
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 892
SmiMI CAYNNNNRTG 2 cut(s) 532, 582
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 3 cut(s) 281, 447, 500
SsiI CCGC 2 cut(s) 854, 889
SspMI CTAG 4 cut(s) 57, 669, 845, 950
SstI GAGCTC 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 696, 901
TaaI ACNGT 5 cut(s) 108, 194, 203, 241, 763
TaiI ACGT 2 cut(s) 680, 864
TaqI TCGA 1 cut(s) 185
TasI AATT 3 cut(s) 281, 447, 500
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 4 cut(s) 182, 215, 269, 640
Tru1I TTAA 4 cut(s) 197, 503, 509, 991
Tru9I TTAA 4 cut(s) 197, 503, 509, 991
TscAI CASTG 1 cut(s) 246
TspDTI ATGAA 3 cut(s) 555, 635, 800
TspGWI ACGGA 1 cut(s) 826
TspRI CASTG 1 cut(s) 246
Tth111I GACNNNGTC 1 cut(s) 84
Van91I CCANNNNNTGG 2 cut(s) 32, 969
VpaK11BI GGWCC 1 cut(s) 892
VspI ATTAAT 1 cut(s) 503
XapI RAATTY 1 cut(s) 281
XspI CTAG 4 cut(s) 57, 669, 845, 950
ZrmI AGTACT 1 cut(s) 427
Zsp2I ATGCAT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.